Wall clock time and date at job start Mon Mar 30 2020 02:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 119.99286 * 2 1 4 4 C 1.38237 * 119.99613 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00292 * 0.02562 * 4 3 2 6 6 C 1.50690 * 120.00209 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47343 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.47465 * 240.00013 * 6 5 4 9 9 C 1.50706 * 109.47185 * 120.00204 * 6 5 4 10 10 O 1.21281 * 119.99699 * 359.97438 * 9 6 5 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 6 5 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 6 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.47079 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99331 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00390 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47408 * 89.99806 * 19 17 15 21 21 H 1.48501 * 109.47447 * 210.00334 * 19 17 15 22 22 H 1.48505 * 109.46796 * 330.00178 * 19 17 15 23 23 C 1.38232 * 119.99534 * 0.25358 * 5 4 3 24 24 C 1.38229 * 120.00226 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47224 * 90.00118 * 1 2 3 26 26 H 1.09001 * 109.46831 * 209.99511 * 1 2 3 27 27 H 1.09004 * 109.47797 * 329.99652 * 1 2 3 28 28 H 1.07998 * 120.00825 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.00293 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46848 * 60.00055 * 8 6 5 31 31 H 1.09000 * 109.47019 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.46910 * 300.00541 * 8 6 5 33 33 H 0.97005 * 120.00161 * 359.72088 * 11 9 6 34 34 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 35 35 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 36 36 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 37 37 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 38 38 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 39 39 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 40 40 H 0.96994 * 120.00439 * 179.97438 * 18 17 15 41 41 H 1.08006 * 119.99994 * 179.72646 * 23 5 4 42 42 H 1.07995 * 120.00322 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0016 6 6 5.7786 0.0003 -0.0028 7 1 6.1419 1.0280 -0.0021 8 6 6.2878 -0.7203 -1.2527 9 6 6.2820 -0.7107 1.2270 10 8 5.4945 -1.1716 2.0259 11 7 7.6072 -0.8334 1.4395 12 6 8.0965 -1.5250 2.6347 13 6 9.6265 -1.5304 2.6304 14 6 10.1374 -2.2521 3.8789 15 6 11.6445 -2.2569 3.8750 16 1 12.1837 -1.7912 3.0634 17 6 12.3346 -2.8547 4.9080 18 7 11.6779 -3.4213 5.8966 19 14 14.2026 -2.8612 4.9029 20 1 14.7038 -1.6494 5.5997 21 1 14.6954 -4.0744 5.6034 22 1 14.6937 -2.8650 3.5014 23 6 3.5806 -1.1969 -0.0074 24 6 2.1982 -1.1971 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3635 0.8899 0.5139 28 1 1.6580 2.1325 0.0004 29 1 4.1204 2.1326 -0.0010 30 1 5.9237 -0.2061 -2.1422 31 1 7.3778 -0.7198 -1.2537 32 1 5.9245 -1.7480 -1.2530 33 1 8.2370 -0.4676 0.7988 34 1 7.7374 -1.0094 3.5253 35 1 7.7295 -2.5514 2.6363 36 1 9.9855 -2.0460 1.7397 37 1 9.9933 -0.5040 2.6288 38 1 9.7784 -1.7362 4.7694 39 1 9.7705 -3.2785 3.8810 40 1 12.1634 -3.8422 6.6232 41 1 4.1206 -2.1323 -0.0127 42 1 1.6583 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144455687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:49 Heat of formation + Delta-G solvation = -65.271981 kcal Electronic energy + Delta-G solvation = -20144.709057 eV Core-core repulsion = 17087.404883 eV Total energy + Delta-G solvation = -3057.304174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32742 -39.82157 -36.99598 -35.60510 -35.18010 -33.14024 -31.97435 -31.71575 -28.62672 -27.53234 -25.66312 -24.33454 -23.60723 -22.31778 -22.07235 -20.67950 -18.59072 -17.96057 -17.51802 -16.83071 -16.55104 -16.34135 -16.19927 -15.74920 -15.33274 -14.91008 -14.53220 -14.38144 -14.20893 -14.16845 -13.80477 -13.67672 -13.33821 -13.15462 -12.95806 -12.75758 -12.61836 -12.54973 -12.42144 -12.37523 -11.83352 -11.76510 -11.67701 -11.56782 -11.24093 -10.72463 -10.56319 -10.08881 -9.76414 -9.37542 -8.20162 -6.31948 0.41539 0.55200 1.41395 1.42906 1.53875 1.64585 2.21512 2.42335 2.90959 3.13523 3.58128 3.78866 4.00227 4.09426 4.13764 4.17490 4.19882 4.24693 4.32263 4.54055 4.56543 4.60021 4.81801 4.83672 4.85756 4.92383 4.93629 4.96956 5.02482 5.16032 5.21027 5.24910 5.31281 5.44168 5.51970 5.53881 5.69390 5.72150 5.73084 5.83238 6.15766 6.21157 6.60001 6.85800 7.28011 7.37839 8.92034 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045122 B = 0.002578 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.388878 B =10857.584744 C =11145.327706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.062 4.062 7 H 0.131 0.869 8 C -0.137 4.137 9 C 0.508 3.492 10 O -0.582 6.582 11 N -0.713 5.713 12 C 0.130 3.870 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.259 1.259 23 C -0.101 4.101 24 C -0.139 4.139 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.416 0.584 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.069 0.931 38 H -0.010 1.010 39 H -0.009 1.009 40 H 0.263 0.737 41 H 0.105 0.895 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.500 10.629 -18.392 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.134 4.134 5 C -0.088 4.088 6 C -0.083 4.083 7 H 0.149 0.851 8 C -0.195 4.195 9 C 0.296 3.704 10 O -0.462 6.462 11 N -0.366 5.366 12 C 0.006 3.994 13 C -0.138 4.138 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.183 1.183 23 C -0.119 4.119 24 C -0.157 4.157 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.253 0.747 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.023 10.205 -17.669 27.224 hybrid contribution 1.200 -0.461 0.572 1.407 sum -16.823 9.744 -17.097 25.889 Atomic orbital electron populations 1.20821 0.89451 1.03381 1.03135 1.20273 0.97519 0.93006 0.98975 1.21291 0.94125 0.98334 1.01155 1.21304 0.94821 0.97578 0.99675 1.19502 0.94026 0.93855 1.01435 1.20340 0.92502 1.02483 0.93008 0.85134 1.21814 1.02262 1.00097 0.95279 1.21220 0.82008 0.79338 0.87862 1.90703 1.56431 1.50321 1.48725 1.45974 1.07078 1.58230 1.25277 1.21198 0.94970 0.95965 0.87245 1.21588 0.91623 1.01258 0.99376 1.18951 0.95264 0.94291 0.92992 1.21683 0.92823 1.36053 1.07236 0.91405 1.26055 1.04174 0.94913 0.95147 1.70117 1.37736 1.38360 1.11439 0.85393 0.78922 0.77596 0.78800 1.19794 1.21095 1.18319 1.20974 0.94662 0.97636 0.98636 1.21209 0.93965 0.98583 1.01929 0.90000 0.91413 0.90561 0.83867 0.83927 0.89435 0.89982 0.93141 0.74704 0.93595 0.93565 0.91232 0.91250 0.99131 0.99101 0.92822 0.87719 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.10 -1.90 5.88 -19.87 -0.12 -2.02 16 3 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 4 C -0.12 -2.27 9.67 22.27 0.22 -2.05 16 5 C -0.09 -2.02 4.39 -19.87 -0.09 -2.10 16 6 C -0.06 -1.23 2.90 -12.29 -0.04 -1.27 16 7 H 0.13 1.85 7.88 -2.39 -0.02 1.83 16 8 C -0.14 -2.07 8.90 71.98 0.64 -1.43 16 9 C 0.51 14.72 7.03 87.66 0.62 15.34 16 10 O -0.58 -22.65 15.13 -3.03 -0.05 -22.69 16 11 N -0.71 -19.43 5.45 -463.05 -2.52 -21.95 16 12 C 0.13 4.67 5.67 86.38 0.49 5.16 16 13 C -0.10 -3.87 5.27 30.59 0.16 -3.70 16 14 C 0.02 1.19 4.97 29.85 0.15 1.34 16 15 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 17 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 18 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 19 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 23 C -0.10 -2.57 7.94 22.27 0.18 -2.39 16 24 C -0.14 -3.14 9.70 22.27 0.22 -2.93 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 27 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 28 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 29 H 0.14 2.02 7.95 -2.91 -0.02 2.00 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 0.97 7.56 -2.39 -0.02 0.96 16 32 H 0.05 0.90 7.37 -2.39 -0.02 0.88 16 33 H 0.42 8.27 7.89 -92.70 -0.73 7.53 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.10 2.83 7.52 -2.91 -0.02 2.81 16 42 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -73.39 350.97 4.05 -69.34 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.26 Total: 15.52 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 4.05 Total: -28.77 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -2.24 Total: -79.23 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.05 Total: -22.69 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -73.39 4.05 -69.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144455687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.067 kcal (2) G-P(sol) polarization free energy of solvation -73.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds