Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36356 * 120.08550 * 2 1 4 4 C 1.39547 * 120.16256 * 179.97438 * 3 2 1 5 5 N 1.38857 * 119.84103 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99898 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47216 * 179.97438 * 6 5 4 8 8 O 1.20759 * 120.00037 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00226 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47451 * 300.00336 * 9 7 6 12 12 C 1.52999 * 109.47120 * 60.00254 * 9 7 6 13 13 C 1.39589 * 120.31589 * 0.02562 * 4 3 2 14 14 C 1.36323 * 120.16140 * 359.97438 * 13 4 3 15 15 C 1.40877 * 120.07945 * 179.97438 * 2 1 3 16 16 C 1.41138 * 120.15282 * 359.74189 * 15 2 1 17 17 H 1.07997 * 120.00240 * 333.65759 * 16 15 2 18 18 C 1.39867 * 119.99467 * 153.65254 * 16 15 2 19 19 N 1.30904 * 120.00010 * 344.02340 * 18 16 15 20 20 Si 1.86801 * 119.99891 * 164.02635 * 18 16 15 21 21 H 1.48500 * 109.47158 * 89.99631 * 20 18 16 22 22 H 1.48501 * 109.47017 * 210.00300 * 20 18 16 23 23 H 1.48503 * 109.46793 * 329.99946 * 20 18 16 24 24 H 1.08994 * 109.47356 * 270.01741 * 1 2 3 25 25 H 1.09005 * 109.46689 * 30.01960 * 1 2 3 26 26 H 1.09005 * 109.47399 * 150.01456 * 1 2 3 27 27 H 1.07996 * 119.91671 * 359.96128 * 3 2 1 28 28 H 0.96998 * 120.00179 * 359.97438 * 5 4 3 29 29 H 1.09005 * 109.47215 * 299.99817 * 6 5 4 30 30 H 1.09007 * 109.47537 * 59.99751 * 6 5 4 31 31 H 1.08998 * 109.47005 * 60.00140 * 10 9 7 32 32 H 1.09000 * 109.47081 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.46923 * 300.00441 * 10 9 7 34 34 H 1.09005 * 109.47085 * 59.99773 * 11 9 7 35 35 H 1.09000 * 109.47456 * 179.97438 * 11 9 7 36 36 H 1.08998 * 109.47013 * 299.99924 * 11 9 7 37 37 H 1.09004 * 109.47231 * 59.99556 * 12 9 7 38 38 H 1.09000 * 109.47388 * 180.02562 * 12 9 7 39 39 H 1.09005 * 109.47022 * 299.99986 * 12 9 7 40 40 H 1.07996 * 119.92083 * 180.02562 * 13 4 3 41 41 H 1.08000 * 120.08080 * 180.02562 * 14 13 4 42 42 H 0.96999 * 119.99673 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1817 0.0005 5 7 4.2753 2.3871 0.0011 6 6 5.7403 2.3931 0.0011 7 6 6.2368 3.8160 0.0011 8 8 5.4483 4.7306 0.0015 9 6 7.7172 4.0974 0.0017 10 6 7.9489 5.6098 0.0022 11 6 8.3525 3.4843 1.2512 12 6 8.3535 3.4840 -1.2472 13 6 4.2922 -0.0223 0.0005 14 6 3.6220 -1.2095 0.0005 15 6 2.2131 -1.2191 0.0005 16 6 1.5123 -2.4442 0.0066 17 1 0.5183 -2.4957 0.4256 18 6 2.1054 -3.5915 -0.5302 19 7 3.1531 -3.4842 -1.3076 20 14 1.4022 -5.2771 -0.1379 21 1 0.3774 -5.6341 -1.1516 22 1 2.4922 -6.2854 -0.1594 23 1 0.7780 -5.2516 1.2093 24 1 -0.3634 0.0003 1.0276 25 1 -0.3633 0.8899 -0.5142 26 1 -0.3634 -0.8901 -0.5136 27 1 1.6506 2.1152 -0.0006 28 1 3.7869 3.2252 0.0007 29 1 6.1057 1.8804 0.8909 30 1 6.1058 1.8811 -0.8891 31 1 7.4957 6.0465 0.8921 32 1 9.0197 5.8134 0.0021 33 1 7.4962 6.0470 -0.8878 34 1 8.1875 2.4068 1.2513 35 1 9.4234 3.6875 1.2514 36 1 7.8993 3.9213 2.1410 37 1 7.9009 3.9208 -2.1375 38 1 9.4244 3.6872 -1.2466 39 1 8.1885 2.4065 -1.2472 40 1 5.3721 -0.0134 0.0014 41 1 4.1698 -2.1403 0.0010 42 1 3.5641 -4.2799 -1.6802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164005003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -33.695781 kcal Electronic energy + Delta-G solvation = -20878.103376 eV Core-core repulsion = 17822.168449 eV Total energy + Delta-G solvation = -3055.934927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17618 -38.00535 -35.93314 -35.01166 -33.03724 -30.97540 -29.57047 -27.75299 -27.58229 -26.82546 -25.75525 -23.99810 -22.47558 -20.96571 -19.17236 -18.46274 -17.09542 -16.63350 -15.96366 -15.40503 -15.08793 -14.82203 -14.16666 -14.16144 -13.76827 -13.69355 -12.91428 -12.80169 -12.58457 -12.45186 -12.43253 -12.37506 -12.29311 -11.92726 -11.67954 -11.53822 -11.18950 -11.10652 -11.09118 -11.01493 -10.92226 -10.76632 -10.43487 -9.56404 -9.47453 -9.26324 -9.19467 -8.48978 -7.32720 -6.61872 -6.37510 -4.02737 1.89656 2.91047 3.07297 3.14999 3.19873 3.35525 3.70653 4.06105 4.43769 4.49031 4.62078 4.75306 4.77153 5.27501 5.34758 5.38608 5.49658 5.59077 5.60157 5.60713 5.62472 5.71967 5.78119 5.89397 6.00643 6.03363 6.26064 6.27508 6.48101 6.73372 6.73662 6.90666 7.02605 7.23545 7.37320 7.41816 7.61862 7.75818 7.83245 8.15329 8.31371 8.48450 8.70741 8.79713 9.07495 9.16414 10.39211 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028309 B = 0.003727 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.855790 B = 7510.319044 C = 8233.518223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.156 4.156 3 C -0.155 4.155 4 C 0.095 3.905 5 N -0.757 5.757 6 C 0.089 3.911 7 C 0.361 3.639 8 O -0.449 6.449 9 C -0.114 4.114 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.141 4.141 13 C -0.170 4.170 14 C -0.121 4.121 15 C 0.078 3.922 16 C -0.462 4.462 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.809 5.809 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.263 1.263 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.393 0.607 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.319 9.704 1.846 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.159 4.159 3 C -0.177 4.177 4 C -0.002 4.002 5 N -0.395 5.395 6 C -0.037 4.037 7 C 0.236 3.764 8 O -0.322 6.322 9 C -0.115 4.115 10 C -0.190 4.190 11 C -0.197 4.197 12 C -0.198 4.198 13 C -0.192 4.192 14 C -0.141 4.141 15 C 0.076 3.924 16 C -0.494 4.494 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.437 5.437 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.187 1.187 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.228 0.772 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.215 9.962 1.705 14.370 hybrid contribution -0.262 -0.601 0.022 0.656 sum 9.952 9.362 1.726 13.772 Atomic orbital electron populations 1.20419 0.93624 1.00542 0.99649 1.19319 0.94209 0.92687 1.09639 1.19665 0.91451 0.96552 1.10005 1.17311 0.90677 0.84729 1.07437 1.43670 1.02135 1.06210 1.87496 1.21339 0.85039 0.94589 1.02766 1.24877 0.90788 0.90984 0.69795 1.90342 1.58562 1.47860 1.35388 1.21165 0.93897 0.98130 0.98303 1.21711 1.01448 0.92961 1.02891 1.21861 1.00963 1.01363 0.95558 1.21863 1.00949 1.01397 0.95572 1.20066 0.96972 0.92013 1.10112 1.20900 0.94645 0.95997 1.02519 1.17357 0.91625 0.91596 0.91867 1.19356 1.02162 0.92561 1.35284 0.90728 1.25794 0.94417 1.00862 0.92987 1.69847 1.19371 1.31013 1.23471 0.86435 0.79259 0.81724 0.79947 1.19808 1.20393 1.18728 0.93980 0.94469 0.91897 0.89501 0.77207 0.90011 0.89970 0.92155 0.92030 0.92150 0.91353 0.91371 0.92171 0.92147 0.91371 0.91325 0.89508 0.86379 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.39 36.00 0.34 -1.48 16 2 C -0.16 -3.85 5.90 -104.30 -0.62 -4.46 16 3 C -0.15 -3.57 9.46 -39.77 -0.38 -3.95 16 4 C 0.10 2.12 6.67 -83.69 -0.56 1.56 16 5 N -0.76 -14.13 5.67 -59.67 -0.34 -14.46 16 6 C 0.09 1.32 4.64 -5.20 -0.02 1.29 16 7 C 0.36 4.79 6.04 -29.04 -0.18 4.61 16 8 O -0.45 -7.22 15.29 6.00 0.09 -7.13 16 9 C -0.11 -1.11 0.87 -155.66 -0.14 -1.24 16 10 C -0.13 -1.24 7.76 37.16 0.29 -0.95 16 11 C -0.14 -1.16 8.25 37.16 0.31 -0.85 16 12 C -0.14 -1.18 8.26 37.16 0.31 -0.87 16 13 C -0.17 -3.93 9.23 -39.77 -0.37 -4.29 16 14 C -0.12 -3.13 8.62 -39.26 -0.34 -3.47 16 15 C 0.08 2.10 5.56 -106.79 -0.59 1.50 16 16 C -0.46 -12.33 8.09 -37.87 -0.31 -12.63 16 17 H 0.07 1.92 6.89 -52.49 -0.36 1.56 16 18 C 0.07 1.89 5.16 -17.34 -0.09 1.80 16 19 N -0.81 -21.25 10.97 55.54 0.61 -20.64 16 20 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.70 8.08 -51.93 -0.42 0.29 16 26 H 0.06 1.37 6.79 -51.93 -0.35 1.01 16 27 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.39 7.26 7.44 -40.82 -0.30 6.96 16 29 H 0.08 1.14 7.16 -51.93 -0.37 0.77 16 30 H 0.08 1.18 7.16 -51.93 -0.37 0.81 16 31 H 0.06 0.61 8.10 -51.93 -0.42 0.18 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.07 0.55 7.28 -51.93 -0.38 0.17 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.57 7.28 -51.93 -0.38 0.19 16 40 H 0.09 1.77 6.68 -52.49 -0.35 1.42 16 41 H 0.12 3.16 6.23 -52.49 -0.33 2.83 16 42 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -29.10 339.16 -8.45 -37.55 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.55 Total: 8.97 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.34 Total: -23.44 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.27 Total: -35.10 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.09 Total: -7.13 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.10 -8.45 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164005003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.850 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds