Wall clock time and date at job start Mon Mar 30 2020 02:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36356 * 120.08550 * 2 1 4 4 C 1.39547 * 120.16256 * 179.97438 * 3 2 1 5 5 N 1.38857 * 119.84103 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99898 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47216 * 179.97438 * 6 5 4 8 8 O 1.20759 * 120.00037 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00226 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47451 * 300.00336 * 9 7 6 12 12 C 1.52999 * 109.47120 * 60.00254 * 9 7 6 13 13 C 1.39589 * 120.31589 * 0.02562 * 4 3 2 14 14 C 1.36323 * 120.16140 * 359.97438 * 13 4 3 15 15 C 1.40877 * 120.07945 * 179.97438 * 2 1 3 16 16 C 1.41138 * 120.15282 * 359.74189 * 15 2 1 17 17 H 1.07997 * 120.00240 * 333.65759 * 16 15 2 18 18 C 1.39867 * 119.99467 * 153.65254 * 16 15 2 19 19 N 1.30904 * 120.00010 * 344.02340 * 18 16 15 20 20 Si 1.86801 * 119.99891 * 164.02635 * 18 16 15 21 21 H 1.48500 * 109.47158 * 89.99631 * 20 18 16 22 22 H 1.48501 * 109.47017 * 210.00300 * 20 18 16 23 23 H 1.48503 * 109.46793 * 329.99946 * 20 18 16 24 24 H 1.08994 * 109.47356 * 270.01741 * 1 2 3 25 25 H 1.09005 * 109.46689 * 30.01960 * 1 2 3 26 26 H 1.09005 * 109.47399 * 150.01456 * 1 2 3 27 27 H 1.07996 * 119.91671 * 359.96128 * 3 2 1 28 28 H 0.96998 * 120.00179 * 359.97438 * 5 4 3 29 29 H 1.09005 * 109.47215 * 299.99817 * 6 5 4 30 30 H 1.09007 * 109.47537 * 59.99751 * 6 5 4 31 31 H 1.08998 * 109.47005 * 60.00140 * 10 9 7 32 32 H 1.09000 * 109.47081 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.46923 * 300.00441 * 10 9 7 34 34 H 1.09005 * 109.47085 * 59.99773 * 11 9 7 35 35 H 1.09000 * 109.47456 * 179.97438 * 11 9 7 36 36 H 1.08998 * 109.47013 * 299.99924 * 11 9 7 37 37 H 1.09004 * 109.47231 * 59.99556 * 12 9 7 38 38 H 1.09000 * 109.47388 * 180.02562 * 12 9 7 39 39 H 1.09005 * 109.47022 * 299.99986 * 12 9 7 40 40 H 1.07996 * 119.92083 * 180.02562 * 13 4 3 41 41 H 1.08000 * 120.08080 * 180.02562 * 14 13 4 42 42 H 0.96999 * 119.99673 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1817 0.0005 5 7 4.2753 2.3871 0.0011 6 6 5.7403 2.3931 0.0011 7 6 6.2368 3.8160 0.0011 8 8 5.4483 4.7306 0.0015 9 6 7.7172 4.0974 0.0017 10 6 7.9489 5.6098 0.0022 11 6 8.3525 3.4843 1.2512 12 6 8.3535 3.4840 -1.2472 13 6 4.2922 -0.0223 0.0005 14 6 3.6220 -1.2095 0.0005 15 6 2.2131 -1.2191 0.0005 16 6 1.5123 -2.4442 0.0066 17 1 0.5183 -2.4957 0.4256 18 6 2.1054 -3.5915 -0.5302 19 7 3.1531 -3.4842 -1.3076 20 14 1.4022 -5.2771 -0.1379 21 1 0.3774 -5.6341 -1.1516 22 1 2.4922 -6.2854 -0.1594 23 1 0.7780 -5.2516 1.2093 24 1 -0.3634 0.0003 1.0276 25 1 -0.3633 0.8899 -0.5142 26 1 -0.3634 -0.8901 -0.5136 27 1 1.6506 2.1152 -0.0006 28 1 3.7869 3.2252 0.0007 29 1 6.1057 1.8804 0.8909 30 1 6.1058 1.8811 -0.8891 31 1 7.4957 6.0465 0.8921 32 1 9.0197 5.8134 0.0021 33 1 7.4962 6.0470 -0.8878 34 1 8.1875 2.4068 1.2513 35 1 9.4234 3.6875 1.2514 36 1 7.8993 3.9213 2.1410 37 1 7.9009 3.9208 -2.1375 38 1 9.4244 3.6872 -1.2466 39 1 8.1885 2.4065 -1.2472 40 1 5.3721 -0.0134 0.0014 41 1 4.1698 -2.1403 0.0010 42 1 3.5641 -4.2799 -1.6802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164005003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:45 Heat of formation + Delta-G solvation = -48.858147 kcal Electronic energy + Delta-G solvation = -20878.760866 eV Core-core repulsion = 17822.168449 eV Total energy + Delta-G solvation = -3056.592417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26765 -39.78248 -36.84441 -36.62140 -34.85069 -32.74635 -31.22337 -29.07770 -28.22269 -28.01411 -27.27250 -25.77719 -23.58039 -22.81002 -20.86982 -19.55663 -18.98959 -17.94260 -17.15249 -16.82983 -16.48615 -16.28249 -15.65546 -15.39137 -15.08929 -14.65934 -14.50731 -14.32669 -14.25290 -13.77948 -13.53082 -13.34915 -13.20757 -13.08031 -13.00615 -12.86359 -12.72424 -12.70660 -12.63105 -12.41618 -12.15374 -11.90619 -11.81970 -11.41277 -11.11727 -11.03273 -10.53480 -10.25208 -9.19576 -8.49861 -8.16553 -5.96935 0.83929 1.11209 1.19970 1.42638 1.53900 1.60727 2.29958 2.56408 2.87949 3.09889 3.70124 3.83188 3.89743 3.96651 4.36352 4.43615 4.45218 4.48542 4.52490 4.70637 4.73748 4.76578 4.84243 4.93679 4.95128 4.96493 5.02616 5.04828 5.12347 5.22053 5.29002 5.34207 5.34793 5.35109 5.51730 5.74891 5.90952 5.96025 6.24211 6.35848 6.45696 6.68183 6.87605 7.08569 7.13963 7.28563 8.53171 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028309 B = 0.003727 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.855790 B = 7510.319044 C = 8233.518223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.167 4.167 3 C -0.171 4.171 4 C 0.110 3.890 5 N -0.755 5.755 6 C 0.079 3.921 7 C 0.366 3.634 8 O -0.482 6.482 9 C -0.107 4.107 10 C -0.132 4.132 11 C -0.140 4.140 12 C -0.141 4.141 13 C -0.177 4.177 14 C -0.140 4.140 15 C 0.039 3.961 16 C -0.494 4.494 17 H 0.072 0.928 18 C 0.032 3.968 19 N -0.843 5.843 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.270 1.270 23 H -0.262 1.262 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.107 0.893 28 H 0.394 0.606 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 10.299 2.117 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.169 4.169 3 C -0.193 4.193 4 C 0.011 3.989 5 N -0.392 5.392 6 C -0.046 4.046 7 C 0.243 3.757 8 O -0.356 6.356 9 C -0.108 4.108 10 C -0.189 4.189 11 C -0.197 4.197 12 C -0.198 4.198 13 C -0.199 4.199 14 C -0.160 4.160 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.090 0.910 18 C -0.179 4.179 19 N -0.471 5.471 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.195 1.195 23 H -0.186 1.186 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.230 0.770 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.119 0.881 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.507 10.589 1.977 15.762 hybrid contribution -0.589 -0.605 -0.063 0.847 sum 10.917 9.984 1.914 14.917 Atomic orbital electron populations 1.20402 0.91720 1.01044 1.00621 1.19748 0.95979 0.92577 1.08609 1.19956 0.92168 0.96945 1.10245 1.17441 0.90815 0.85738 1.04890 1.43757 1.03923 1.04979 1.86500 1.21638 0.82699 0.96454 1.03798 1.25213 0.92469 0.89614 0.68369 1.90341 1.59759 1.48378 1.37134 1.21179 0.91032 0.98748 0.99864 1.21722 1.02942 0.92392 1.01827 1.21901 1.02212 1.01307 0.94287 1.21903 1.02227 1.01283 0.94354 1.20238 0.98286 0.91441 1.09967 1.20878 0.94739 0.96370 1.04033 1.17712 0.92348 0.92656 0.93643 1.19554 1.02544 0.93700 1.36754 0.91000 1.26569 0.94739 1.04274 0.92362 1.69913 1.20667 1.32201 1.24352 0.85358 0.78648 0.76967 0.79600 1.19206 1.19502 1.18588 0.92671 0.92268 0.92992 0.87543 0.77041 0.88649 0.89015 0.93195 0.89461 0.93304 0.91089 0.89058 0.92720 0.92860 0.89024 0.91153 0.87039 0.88099 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.43 9.39 71.24 0.67 -2.76 16 2 C -0.17 -8.26 5.90 -19.66 -0.12 -8.38 16 3 C -0.17 -7.79 9.46 22.15 0.21 -7.58 16 4 C 0.11 4.80 6.67 38.67 0.26 5.06 16 5 N -0.75 -27.18 5.67 -342.70 -1.94 -29.13 16 6 C 0.08 2.21 4.64 85.63 0.40 2.61 16 7 C 0.37 9.17 6.04 29.10 0.18 9.34 16 8 O -0.48 -15.10 15.29 -1.45 -0.02 -15.12 16 9 C -0.11 -1.83 0.87 -52.93 -0.05 -1.88 16 10 C -0.13 -2.18 7.76 71.98 0.56 -1.63 16 11 C -0.14 -1.90 8.25 71.98 0.59 -1.31 16 12 C -0.14 -1.97 8.26 71.98 0.59 -1.38 16 13 C -0.18 -8.17 9.23 22.15 0.20 -7.96 16 14 C -0.14 -7.44 8.62 22.48 0.19 -7.25 16 15 C 0.04 2.15 5.56 -21.27 -0.12 2.03 16 16 C -0.49 -27.08 8.09 23.38 0.19 -26.89 16 17 H 0.07 3.81 6.89 -2.91 -0.02 3.79 16 18 C 0.03 1.67 5.16 85.23 0.44 2.11 16 19 N -0.84 -45.34 10.97 21.82 0.24 -45.10 16 20 Si 0.97 39.65 29.59 68.60 2.03 41.68 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 22 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 24 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 2.18 8.08 -2.38 -0.02 2.16 16 26 H 0.05 2.28 6.79 -2.38 -0.02 2.26 16 27 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 28 H 0.39 14.13 7.44 -92.71 -0.69 13.44 16 29 H 0.10 2.45 7.16 -2.38 -0.02 2.44 16 30 H 0.09 2.44 7.16 -2.38 -0.02 2.42 16 31 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.07 0.94 7.28 -2.38 -0.02 0.92 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.97 7.28 -2.38 -0.02 0.95 16 40 H 0.11 4.44 6.68 -2.91 -0.02 4.42 16 41 H 0.10 5.61 6.23 -2.91 -0.02 5.59 16 42 H 0.28 13.78 8.30 -92.71 -0.77 13.01 16 Total: -1.00 -63.87 339.16 4.83 -59.04 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.32 Total: 34.49 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 4.20 Total: -45.86 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -1.70 Total: -74.22 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.02 Total: -15.12 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -63.87 4.83 -59.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164005003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.179 kcal (2) G-P(sol) polarization free energy of solvation -63.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds