Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36361 * 119.91920 * 2 1 4 4 C 1.40868 * 119.83591 * 179.97438 * 3 2 1 5 5 C 1.41137 * 120.15399 * 179.97438 * 4 3 2 6 6 H 1.08006 * 120.00052 * 24.49410 * 5 4 3 7 7 C 1.39864 * 120.00338 * 204.49375 * 5 4 3 8 8 N 1.30907 * 119.99796 * 17.80723 * 7 5 4 9 9 Si 1.86795 * 120.00234 * 197.81190 * 7 5 4 10 10 H 1.48499 * 109.47196 * 89.99740 * 9 7 5 11 11 H 1.48504 * 109.47145 * 209.99441 * 9 7 5 12 12 H 1.48494 * 109.47265 * 329.99768 * 9 7 5 13 13 C 1.40902 * 119.68998 * 359.71892 * 4 3 2 14 14 C 1.36317 * 119.83548 * 0.55660 * 13 4 3 15 15 C 1.39549 * 119.92218 * 179.97438 * 2 1 3 16 16 N 1.38857 * 119.84111 * 0.02562 * 15 2 1 17 17 C 1.46496 * 120.00391 * 180.02562 * 16 15 2 18 18 C 1.50692 * 109.47397 * 180.02562 * 17 16 15 19 19 O 1.20759 * 120.00252 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.00284 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47601 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.47257 * 300.00211 * 20 18 17 23 23 C 1.53007 * 109.46869 * 59.99994 * 20 18 17 24 24 H 1.09000 * 109.46867 * 270.01775 * 1 2 3 25 25 H 1.08997 * 109.47296 * 30.01643 * 1 2 3 26 26 H 1.08991 * 109.47025 * 150.02140 * 1 2 3 27 27 H 1.08002 * 120.08303 * 359.96301 * 3 2 1 28 28 H 0.96993 * 120.00293 * 180.02562 * 8 7 5 29 29 H 1.08005 * 120.08030 * 180.31830 * 13 4 3 30 30 H 1.07998 * 119.92257 * 179.73926 * 14 13 4 31 31 H 0.97011 * 119.99527 * 0.03002 * 16 15 2 32 32 H 1.09002 * 109.47152 * 300.00380 * 17 16 15 33 33 H 1.08997 * 109.46722 * 59.99853 * 17 16 15 34 34 H 1.08991 * 109.46989 * 59.99827 * 21 20 18 35 35 H 1.08997 * 109.47297 * 180.02562 * 21 20 18 36 36 H 1.08999 * 109.46560 * 299.99976 * 21 20 18 37 37 H 1.09005 * 109.46660 * 59.99749 * 22 20 18 38 38 H 1.08997 * 109.47016 * 179.97438 * 22 20 18 39 39 H 1.08991 * 109.47018 * 299.99980 * 22 20 18 40 40 H 1.09003 * 109.46981 * 60.00362 * 23 20 18 41 41 H 1.09005 * 109.46936 * 180.02562 * 23 20 18 42 42 H 1.08995 * 109.47026 * 299.99872 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1798 0.0005 5 6 4.3066 2.3992 0.0000 6 1 3.8430 3.2947 0.3870 7 6 5.6112 2.4480 -0.5017 8 7 6.0514 1.4880 -1.2751 9 14 6.7256 3.8831 -0.0680 10 1 7.4795 3.5673 1.1718 11 1 7.6801 4.1224 -1.1802 12 1 5.9033 5.1003 0.1492 13 6 4.2919 -0.0452 0.0071 14 6 3.5989 -1.2191 0.0014 15 6 2.2031 -1.2095 0.0005 16 7 1.5039 -2.4091 0.0005 17 6 2.2310 -3.6809 0.0017 18 6 1.2470 -4.8222 0.0008 19 8 0.0607 -4.5967 -0.0011 20 6 1.7434 -6.2451 0.0011 21 6 0.5494 -7.2019 -0.0006 22 6 2.5934 -6.4890 -1.2474 23 6 2.5913 -6.4891 1.2511 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6472 2.1172 -0.0006 28 1 6.9562 1.5216 -1.6228 29 1 5.3719 -0.0541 0.0127 30 1 4.1311 -2.1588 0.0021 31 1 0.5338 -2.4050 -0.0003 32 1 2.8582 -3.7416 -0.8878 33 1 2.8567 -3.7408 0.8921 34 1 -0.0543 -7.0279 -0.8912 35 1 0.9085 -8.2310 0.0001 36 1 -0.0565 -7.0282 0.8887 37 1 3.4441 -5.8074 -1.2466 38 1 2.9528 -7.5180 -1.2469 39 1 1.9894 -6.3152 -2.1379 40 1 1.9857 -6.3154 2.1406 41 1 2.9508 -7.5182 1.2511 42 1 3.4419 -5.8076 1.2518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164005572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = -32.485758 kcal Electronic energy + Delta-G solvation = -20983.383130 eV Core-core repulsion = 17927.500673 eV Total energy + Delta-G solvation = -3055.882457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18647 -38.10028 -35.92723 -34.87145 -33.10485 -31.28005 -29.44016 -27.85748 -27.58252 -26.75330 -25.75510 -24.09697 -22.61519 -20.31419 -19.92749 -18.42941 -16.88837 -16.63898 -16.01670 -15.40691 -15.17330 -14.90636 -14.25308 -14.17328 -13.82571 -13.53830 -13.01816 -12.71269 -12.60675 -12.46653 -12.42924 -12.37062 -12.28865 -11.92515 -11.79827 -11.70189 -11.45604 -11.18692 -11.08953 -11.03893 -10.88364 -10.66906 -10.40757 -9.64392 -9.47870 -9.29838 -9.23663 -8.55315 -7.35007 -6.62242 -6.37021 -4.02981 1.89580 2.91873 3.06272 3.15547 3.19253 3.34872 3.70907 4.06084 4.44350 4.49157 4.62078 4.74724 4.75349 5.27560 5.34781 5.38644 5.49742 5.59189 5.60298 5.60931 5.62760 5.71994 5.77983 5.89379 5.98168 6.00660 6.03371 6.10483 6.33246 6.38669 6.60099 6.85699 6.95156 7.23373 7.38738 7.41931 7.56522 7.72357 7.86423 8.16085 8.29860 8.47231 8.71019 8.80524 9.06777 9.15831 10.38020 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027046 B = 0.003833 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.021361 B = 7303.009978 C = 8070.515323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.129 4.129 3 C -0.183 4.183 4 C 0.077 3.923 5 C -0.467 4.467 6 H 0.072 0.928 7 C 0.075 3.925 8 N -0.808 5.808 9 Si 0.903 3.097 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.265 1.265 13 C -0.126 4.126 14 C -0.164 4.164 15 C 0.095 3.905 16 N -0.756 5.756 17 C 0.088 3.912 18 C 0.361 3.639 19 O -0.450 6.450 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.140 4.140 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.276 0.724 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.394 0.606 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 -14.610 1.874 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C -0.203 4.203 4 C 0.074 3.926 5 C -0.498 4.498 6 H 0.091 0.909 7 C -0.140 4.140 8 N -0.435 5.435 9 Si 0.728 3.272 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.189 1.189 13 C -0.146 4.146 14 C -0.186 4.186 15 C -0.002 4.002 16 N -0.396 5.396 17 C -0.038 4.038 18 C 0.236 3.764 19 O -0.322 6.322 20 C -0.115 4.115 21 C -0.190 4.190 22 C -0.198 4.198 23 C -0.197 4.197 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.106 0.894 31 H 0.231 0.769 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.099 -14.650 1.727 15.310 hybrid contribution 0.436 0.599 0.049 0.743 sum -3.663 -14.050 1.776 14.628 Atomic orbital electron populations 1.20495 0.93980 1.00594 1.00229 1.18649 0.93488 0.92232 1.08905 1.20453 0.94248 0.94818 1.10785 1.17478 0.90619 0.93235 0.91243 1.19375 0.97704 0.95791 1.36914 0.90944 1.25787 0.98461 0.96954 0.92797 1.69856 1.17447 1.32418 1.23791 0.86404 0.79947 0.82005 0.78817 1.19560 1.20602 1.18875 1.20916 0.99639 0.91069 1.02971 1.20062 0.91432 0.97507 1.09580 1.17123 0.90818 0.84069 1.08189 1.43757 1.07370 1.01061 1.87387 1.21345 0.95081 0.84639 1.02780 1.24880 0.89846 0.91934 0.69778 1.90340 1.19329 1.87109 1.35411 1.21165 0.98023 0.93997 0.98302 1.21709 0.96496 0.97913 1.02889 1.21863 0.99542 1.02800 0.95575 1.21860 0.99532 1.02797 0.95552 0.93205 0.92809 0.93544 0.88972 0.91360 0.86376 0.89418 0.76931 0.89969 0.89996 0.92143 0.92034 0.92162 0.91325 0.91372 0.92151 0.92171 0.91377 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.55 36.01 0.34 -1.45 16 2 C -0.13 -2.94 5.86 -104.81 -0.61 -3.55 16 3 C -0.18 -4.57 9.37 -39.26 -0.37 -4.94 16 4 C 0.08 2.09 5.57 -106.79 -0.60 1.49 16 5 C -0.47 -12.70 9.03 -37.87 -0.34 -13.04 16 6 H 0.07 1.91 7.91 -52.48 -0.41 1.50 16 7 C 0.08 1.94 5.13 -17.34 -0.09 1.85 16 8 N -0.81 -21.34 10.96 55.54 0.61 -20.73 16 9 Si 0.90 19.23 29.59 -169.99 -5.03 14.20 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 13 C -0.13 -3.28 8.63 -39.27 -0.34 -3.62 16 14 C -0.16 -3.80 9.23 -39.77 -0.37 -4.16 16 15 C 0.09 2.10 6.65 -83.69 -0.56 1.55 16 16 N -0.76 -14.07 5.57 -59.68 -0.33 -14.41 16 17 C 0.09 1.30 4.64 -5.20 -0.02 1.28 16 18 C 0.36 4.78 6.04 -29.04 -0.18 4.61 16 19 O -0.45 -7.21 15.29 6.00 0.09 -7.12 16 20 C -0.11 -1.10 0.87 -155.65 -0.14 -1.24 16 21 C -0.13 -1.24 7.76 37.16 0.29 -0.95 16 22 C -0.14 -1.18 8.25 37.16 0.31 -0.87 16 23 C -0.14 -1.15 8.26 37.16 0.31 -0.85 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 26 H 0.05 0.81 6.53 -51.93 -0.34 0.47 16 27 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 28 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 29 H 0.12 3.18 6.17 -52.48 -0.32 2.85 16 30 H 0.09 1.79 6.68 -52.49 -0.35 1.44 16 31 H 0.39 7.27 5.39 -40.82 -0.22 7.05 16 32 H 0.08 1.18 7.16 -51.93 -0.37 0.80 16 33 H 0.08 1.14 7.16 -51.93 -0.37 0.77 16 34 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.07 0.57 7.28 -51.93 -0.38 0.19 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.55 7.28 -51.93 -0.38 0.17 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -29.38 338.66 -8.42 -37.81 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.50 Total: 9.05 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.36 Total: -23.90 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.28 Total: -35.14 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.09 Total: -7.12 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.38 -8.42 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164005572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.320 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds