Wall clock time and date at job start Mon Mar 30 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36361 * 119.91920 * 2 1 4 4 C 1.40868 * 119.83591 * 179.97438 * 3 2 1 5 5 C 1.41137 * 120.15399 * 179.97438 * 4 3 2 6 6 H 1.08006 * 120.00052 * 24.49410 * 5 4 3 7 7 C 1.39864 * 120.00338 * 204.49375 * 5 4 3 8 8 N 1.30907 * 119.99796 * 17.80723 * 7 5 4 9 9 Si 1.86795 * 120.00234 * 197.81190 * 7 5 4 10 10 H 1.48499 * 109.47196 * 89.99740 * 9 7 5 11 11 H 1.48504 * 109.47145 * 209.99441 * 9 7 5 12 12 H 1.48494 * 109.47265 * 329.99768 * 9 7 5 13 13 C 1.40902 * 119.68998 * 359.71892 * 4 3 2 14 14 C 1.36317 * 119.83548 * 0.55660 * 13 4 3 15 15 C 1.39549 * 119.92218 * 179.97438 * 2 1 3 16 16 N 1.38857 * 119.84111 * 0.02562 * 15 2 1 17 17 C 1.46496 * 120.00391 * 180.02562 * 16 15 2 18 18 C 1.50692 * 109.47397 * 180.02562 * 17 16 15 19 19 O 1.20759 * 120.00252 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.00284 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47601 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.47257 * 300.00211 * 20 18 17 23 23 C 1.53007 * 109.46869 * 59.99994 * 20 18 17 24 24 H 1.09000 * 109.46867 * 270.01775 * 1 2 3 25 25 H 1.08997 * 109.47296 * 30.01643 * 1 2 3 26 26 H 1.08991 * 109.47025 * 150.02140 * 1 2 3 27 27 H 1.08002 * 120.08303 * 359.96301 * 3 2 1 28 28 H 0.96993 * 120.00293 * 180.02562 * 8 7 5 29 29 H 1.08005 * 120.08030 * 180.31830 * 13 4 3 30 30 H 1.07998 * 119.92257 * 179.73926 * 14 13 4 31 31 H 0.97011 * 119.99527 * 0.03002 * 16 15 2 32 32 H 1.09002 * 109.47152 * 300.00380 * 17 16 15 33 33 H 1.08997 * 109.46722 * 59.99853 * 17 16 15 34 34 H 1.08991 * 109.46989 * 59.99827 * 21 20 18 35 35 H 1.08997 * 109.47297 * 180.02562 * 21 20 18 36 36 H 1.08999 * 109.46560 * 299.99976 * 21 20 18 37 37 H 1.09005 * 109.46660 * 59.99749 * 22 20 18 38 38 H 1.08997 * 109.47016 * 179.97438 * 22 20 18 39 39 H 1.08991 * 109.47018 * 299.99980 * 22 20 18 40 40 H 1.09003 * 109.46981 * 60.00362 * 23 20 18 41 41 H 1.09005 * 109.46936 * 180.02562 * 23 20 18 42 42 H 1.08995 * 109.47026 * 299.99872 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1798 0.0005 5 6 4.3066 2.3992 0.0000 6 1 3.8430 3.2947 0.3870 7 6 5.6112 2.4480 -0.5017 8 7 6.0514 1.4880 -1.2751 9 14 6.7256 3.8831 -0.0680 10 1 7.4795 3.5673 1.1718 11 1 7.6801 4.1224 -1.1802 12 1 5.9033 5.1003 0.1492 13 6 4.2919 -0.0452 0.0071 14 6 3.5989 -1.2191 0.0014 15 6 2.2031 -1.2095 0.0005 16 7 1.5039 -2.4091 0.0005 17 6 2.2310 -3.6809 0.0017 18 6 1.2470 -4.8222 0.0008 19 8 0.0607 -4.5967 -0.0011 20 6 1.7434 -6.2451 0.0011 21 6 0.5494 -7.2019 -0.0006 22 6 2.5934 -6.4890 -1.2474 23 6 2.5913 -6.4891 1.2511 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6472 2.1172 -0.0006 28 1 6.9562 1.5216 -1.6228 29 1 5.3719 -0.0541 0.0127 30 1 4.1311 -2.1588 0.0021 31 1 0.5338 -2.4050 -0.0003 32 1 2.8582 -3.7416 -0.8878 33 1 2.8567 -3.7408 0.8921 34 1 -0.0543 -7.0279 -0.8912 35 1 0.9085 -8.2310 0.0001 36 1 -0.0565 -7.0282 0.8887 37 1 3.4441 -5.8074 -1.2466 38 1 2.9528 -7.5180 -1.2469 39 1 1.9894 -6.3152 -2.1379 40 1 1.9857 -6.3154 2.1406 41 1 2.9508 -7.5182 1.2511 42 1 3.4419 -5.8076 1.2518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164005572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:45 Heat of formation + Delta-G solvation = -47.823767 kcal Electronic energy + Delta-G solvation = -20984.048236 eV Core-core repulsion = 17927.500673 eV Total energy + Delta-G solvation = -3056.547563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27994 -39.85571 -36.81745 -36.56227 -34.84503 -33.06377 -31.13315 -29.11909 -28.21763 -27.74437 -27.51103 -25.81772 -23.80904 -22.00425 -21.70670 -19.53707 -18.74004 -18.05438 -17.23294 -16.85144 -16.48356 -16.42154 -15.66560 -15.24274 -15.12311 -14.69232 -14.47062 -14.38427 -14.16211 -13.68731 -13.59118 -13.53548 -13.23661 -13.16391 -13.06264 -12.99444 -12.74468 -12.65808 -12.59253 -12.33085 -12.18496 -11.90029 -11.81406 -11.49795 -11.17181 -11.07137 -10.52725 -10.34770 -9.23307 -8.53178 -8.16271 -6.00917 0.84585 1.11124 1.16305 1.41114 1.53357 1.58960 2.28270 2.57374 2.83265 3.10753 3.70797 3.81787 3.90276 3.97255 4.31510 4.38632 4.43682 4.46134 4.47771 4.66463 4.71324 4.74312 4.84857 4.88060 4.94765 4.95692 4.99551 5.03336 5.07754 5.09817 5.22593 5.31005 5.34965 5.35523 5.51620 5.69229 5.85783 5.98148 6.20454 6.35618 6.42473 6.66173 6.85312 7.08311 7.09432 7.26528 8.48949 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027046 B = 0.003833 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.021361 B = 7303.009978 C = 8070.515323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.142 4.142 3 C -0.196 4.196 4 C 0.040 3.960 5 C -0.506 4.506 6 H 0.065 0.935 7 C 0.034 3.966 8 N -0.839 5.839 9 Si 0.976 3.024 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.263 1.263 13 C -0.146 4.146 14 C -0.168 4.168 15 C 0.107 3.893 16 N -0.753 5.753 17 C 0.077 3.923 18 C 0.367 3.633 19 O -0.481 6.481 20 C -0.107 4.107 21 C -0.132 4.132 22 C -0.141 4.141 23 C -0.140 4.140 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.283 0.717 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.396 0.604 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -16.367 2.113 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C -0.216 4.216 4 C 0.037 3.963 5 C -0.537 4.537 6 H 0.084 0.916 7 C -0.178 4.178 8 N -0.467 5.467 9 Si 0.798 3.202 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.187 1.187 13 C -0.166 4.166 14 C -0.190 4.190 15 C 0.008 3.992 16 N -0.392 5.392 17 C -0.048 4.048 18 C 0.243 3.757 19 O -0.356 6.356 20 C -0.108 4.108 21 C -0.189 4.189 22 C -0.198 4.198 23 C -0.197 4.197 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.233 0.767 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.937 -16.449 1.966 17.028 hybrid contribution 0.264 0.999 -0.032 1.034 sum -3.672 -15.450 1.935 15.998 Atomic orbital electron populations 1.20487 0.91013 1.01677 1.01510 1.19084 0.95827 0.91762 1.07935 1.20620 0.93865 0.95944 1.11215 1.17815 0.91784 0.93828 0.92825 1.19586 0.99369 0.95883 1.38906 0.91650 1.26579 0.99284 0.99858 0.92076 1.69910 1.18115 1.34245 1.24416 0.85299 0.77773 0.78323 0.78812 1.18855 1.19477 1.18719 1.20859 0.99050 0.91967 1.04744 1.20267 0.92084 0.97680 1.09007 1.17257 0.90747 0.85371 1.05821 1.43830 1.07614 1.01308 1.86419 1.21651 0.95696 0.83578 1.03844 1.25207 0.88935 0.93142 0.68377 1.90338 1.20451 1.87663 1.37128 1.21177 0.98594 0.91192 0.99843 1.21719 0.96100 0.99218 1.01841 1.21903 0.99138 1.04358 0.94372 1.21901 0.99151 1.04362 0.94296 0.91709 0.91865 0.92333 0.88871 0.90698 0.87993 0.86778 0.76718 0.88981 0.88610 0.93278 0.89500 0.93186 0.91149 0.89056 0.92855 0.92711 0.89094 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.55 71.24 0.68 -2.55 16 2 C -0.14 -6.42 5.86 -19.99 -0.12 -6.54 16 3 C -0.20 -10.05 9.37 22.48 0.21 -9.84 16 4 C 0.04 2.26 5.57 -21.27 -0.12 2.14 16 5 C -0.51 -28.64 9.03 23.38 0.21 -28.43 16 6 H 0.07 3.62 7.91 -2.91 -0.02 3.60 16 7 C 0.03 1.80 5.13 85.22 0.44 2.24 16 8 N -0.84 -45.42 10.96 21.82 0.24 -45.18 16 9 Si 0.98 40.08 29.59 68.60 2.03 42.11 16 10 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 11 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 13 C -0.15 -7.82 8.63 22.47 0.19 -7.63 16 14 C -0.17 -7.76 9.23 22.15 0.20 -7.55 16 15 C 0.11 4.65 6.65 38.67 0.26 4.91 16 16 N -0.75 -26.86 5.57 -342.73 -1.91 -28.77 16 17 C 0.08 2.14 4.64 85.63 0.40 2.53 16 18 C 0.37 9.06 6.04 29.10 0.18 9.24 16 19 O -0.48 -14.89 15.29 -1.45 -0.02 -14.91 16 20 C -0.11 -1.80 0.87 -52.92 -0.05 -1.85 16 21 C -0.13 -2.16 7.76 71.98 0.56 -1.60 16 22 C -0.14 -1.95 8.25 71.98 0.59 -1.35 16 23 C -0.14 -1.88 8.26 71.98 0.59 -1.28 16 24 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.06 2.13 8.08 -2.39 -0.02 2.12 16 26 H 0.06 1.94 6.53 -2.39 -0.02 1.93 16 27 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 28 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 29 H 0.10 5.69 6.17 -2.91 -0.02 5.68 16 30 H 0.11 4.51 6.68 -2.91 -0.02 4.49 16 31 H 0.40 13.97 5.39 -92.70 -0.50 13.47 16 32 H 0.09 2.42 7.16 -2.39 -0.02 2.40 16 33 H 0.10 2.43 7.16 -2.39 -0.02 2.42 16 34 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 37 H 0.07 0.96 7.28 -2.38 -0.02 0.94 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.07 0.92 7.28 -2.39 -0.02 0.91 16 Total: -1.00 -65.12 338.66 5.08 -60.05 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.51 Total: 34.26 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 4.23 Total: -47.56 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -1.67 Total: -73.95 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.02 Total: -14.91 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -65.12 5.08 -60.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164005572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.222 kcal (2) G-P(sol) polarization free energy of solvation -65.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds