Wall clock time and date at job start Mon Mar 30 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36353 * 120.08281 * 2 1 4 4 C 1.39543 * 120.16151 * 180.02562 * 3 2 1 5 5 N 1.38857 * 119.84466 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00440 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47405 * 176.09091 * 6 5 4 8 8 C 1.53002 * 112.84990 * 294.85375 * 7 6 5 9 9 O 1.42898 * 109.46849 * 295.13143 * 8 7 6 10 10 C 1.53777 * 113.61464 * 163.65419 * 7 6 5 11 11 C 1.53956 * 87.02342 * 220.04784 * 10 7 6 12 12 C 1.53787 * 113.61434 * 66.04597 * 7 6 5 13 13 C 1.39587 * 120.31538 * 359.97438 * 4 3 2 14 14 C 1.36321 * 120.16386 * 359.74289 * 13 4 3 15 15 C 1.40872 * 120.07959 * 180.02562 * 2 1 3 16 16 C 1.41135 * 120.15642 * 359.95042 * 15 2 1 17 17 H 1.07997 * 120.00021 * 30.12189 * 16 15 2 18 18 C 1.39866 * 120.00115 * 210.12626 * 16 15 2 19 19 N 1.30899 * 120.00299 * 197.51603 * 18 16 15 20 20 Si 1.86804 * 119.99696 * 17.51769 * 18 16 15 21 21 H 1.48500 * 109.46883 * 269.99850 * 20 18 16 22 22 H 1.48503 * 109.47371 * 30.00163 * 20 18 16 23 23 H 1.48508 * 109.46880 * 150.00029 * 20 18 16 24 24 H 1.09000 * 109.46998 * 269.97536 * 1 2 3 25 25 H 1.08999 * 109.47195 * 29.97568 * 1 2 3 26 26 H 1.08998 * 109.47581 * 149.97708 * 1 2 3 27 27 H 1.07997 * 119.92122 * 359.97438 * 3 2 1 28 28 H 0.97008 * 119.99818 * 359.97438 * 5 4 3 29 29 H 1.09005 * 109.47300 * 296.09145 * 6 5 4 30 30 H 1.08995 * 109.47352 * 56.09029 * 6 5 4 31 31 H 1.08997 * 109.47010 * 55.13163 * 8 7 6 32 32 H 1.09001 * 109.47260 * 175.12966 * 8 7 6 33 33 H 0.96699 * 114.00060 * 180.02562 * 9 8 7 34 34 H 1.08997 * 113.62093 * 334.57058 * 10 7 6 35 35 H 1.09009 * 113.61263 * 105.47452 * 10 7 6 36 36 H 1.09002 * 113.53799 * 270.81649 * 11 10 7 37 37 H 1.08994 * 113.74557 * 139.94000 * 11 10 7 38 38 H 1.08995 * 113.61849 * 254.53011 * 12 7 6 39 39 H 1.08997 * 113.61040 * 25.35220 * 12 7 6 40 40 H 1.08003 * 119.91877 * 180.02562 * 13 4 3 41 41 H 1.07996 * 120.08633 * 180.27634 * 14 13 4 42 42 H 0.96998 * 119.99618 * 355.02197 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1818 -0.0005 5 7 4.2753 2.3871 -0.0011 6 6 5.7402 2.3932 -0.0011 7 6 6.2443 3.8344 -0.1001 8 6 5.8809 4.5010 -1.4284 9 8 6.5510 3.8298 -2.4972 10 6 7.7237 3.9975 0.2866 11 6 7.3118 5.3010 0.9947 12 6 5.9067 4.6911 1.1317 13 6 4.2921 -0.0222 -0.0005 14 6 3.6221 -1.2094 0.0053 15 6 2.2131 -1.2190 -0.0005 16 6 1.5124 -2.4442 0.0000 17 1 0.5417 -2.5113 -0.4687 18 6 2.0751 -3.5714 0.6075 19 7 1.6161 -4.7645 0.3259 20 14 3.4818 -3.3741 1.8207 21 1 4.7748 -3.4282 1.0925 22 1 3.3582 -2.0665 2.5137 23 1 3.4305 -4.4710 2.8206 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6506 2.1152 -0.0004 28 1 3.7868 3.2252 -0.0014 29 1 6.1055 1.9432 0.9221 30 1 6.1059 1.8211 -0.8536 31 1 4.8033 4.4424 -1.5815 32 1 6.1884 5.5465 -1.4064 33 1 6.3668 4.2002 -3.3712 34 1 8.0848 3.2263 0.9670 35 1 8.3835 4.1530 -0.5670 36 1 7.3461 6.1775 0.3476 37 1 7.8138 5.4596 1.9491 38 1 5.1019 5.4056 0.9594 39 1 5.7687 4.1097 2.0433 40 1 5.3721 -0.0133 -0.0005 41 1 4.1697 -2.1402 0.0098 42 1 0.8399 -4.8626 -0.2474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164361842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:22 Heat of formation + Delta-G solvation = -20.094077 kcal Electronic energy + Delta-G solvation = -21250.889169 eV Core-core repulsion = 18195.544056 eV Total energy + Delta-G solvation = -3055.345113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.02692 -38.21069 -36.15355 -35.03657 -33.04959 -31.26971 -29.96761 -27.91892 -26.58265 -25.90102 -25.32489 -23.37448 -22.24948 -21.27320 -19.10855 -18.39694 -17.99717 -17.45919 -16.59293 -15.66790 -15.17881 -14.94748 -14.17130 -14.07323 -13.83854 -13.69732 -13.56431 -13.18350 -12.73504 -12.47869 -12.45522 -12.09202 -11.94322 -11.79028 -11.57631 -11.24681 -11.04548 -10.77152 -10.66506 -10.48772 -10.41710 -10.24838 -10.07844 -9.89924 -9.71414 -9.08120 -9.05244 -8.50841 -7.55529 -7.12682 -6.48168 -4.13320 2.72609 2.91104 3.32991 3.47986 3.66427 3.84151 4.20012 4.23869 4.48438 4.52726 4.64428 4.74186 4.90763 5.04262 5.19594 5.39661 5.45080 5.52693 5.62668 5.66156 5.74072 5.87144 5.92803 6.01434 6.06420 6.11851 6.27846 6.29939 6.31147 6.48873 6.62427 6.73671 6.83640 7.05296 7.24652 7.48047 7.50815 7.58701 7.78076 7.98369 8.07518 8.31701 8.55685 8.65179 8.83533 9.05330 10.29070 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.004396 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.535896 B = 6367.857024 C = 6811.147299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.146 4.146 3 C -0.146 4.146 4 C 0.098 3.902 5 N -0.757 5.757 6 C 0.156 3.844 7 C -0.092 4.092 8 C 0.103 3.897 9 O -0.565 6.565 10 C -0.122 4.122 11 C -0.144 4.144 12 C -0.125 4.125 13 C -0.145 4.145 14 C -0.203 4.203 15 C 0.067 3.933 16 C -0.524 4.524 17 H 0.074 0.926 18 C 0.041 3.959 19 N -0.839 5.839 20 Si 1.073 2.927 21 H -0.280 1.280 22 H -0.266 1.266 23 H -0.294 1.294 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.383 0.617 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.377 0.623 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 18.267 -0.389 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.148 4.148 3 C -0.168 4.168 4 C 0.001 3.999 5 N -0.392 5.392 6 C 0.031 3.969 7 C -0.093 4.093 8 C 0.025 3.975 9 O -0.370 6.370 10 C -0.160 4.160 11 C -0.181 4.181 12 C -0.162 4.162 13 C -0.167 4.167 14 C -0.223 4.223 15 C 0.063 3.937 16 C -0.555 4.555 17 H 0.092 0.908 18 C -0.176 4.176 19 N -0.464 5.464 20 Si 0.901 3.099 21 H -0.208 1.208 22 H -0.190 1.190 23 H -0.222 1.222 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.215 0.785 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.224 0.776 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.019 16.882 1.014 19.658 hybrid contribution -1.563 1.454 -1.568 2.649 sum 8.457 18.336 -0.554 20.200 Atomic orbital electron populations 1.20423 0.93296 1.00231 1.00250 1.19369 0.94432 0.92551 1.08429 1.19781 0.91629 0.96590 1.08790 1.17271 0.90533 0.85273 1.06864 1.43791 1.03495 1.04887 1.87070 1.20919 0.82013 0.93732 1.00257 1.22029 0.97592 0.96039 0.93609 1.21820 0.95684 0.93779 0.86177 1.86489 1.72447 1.60473 1.17604 1.22869 0.95235 0.97554 1.00331 1.22898 0.97080 0.97386 1.00743 1.22914 0.97040 0.98590 0.97705 1.19960 0.97353 0.91695 1.07669 1.20729 0.94601 0.96252 1.10688 1.17522 0.91141 0.92769 0.92266 1.20387 1.05896 0.94642 1.34558 0.90764 1.27059 1.01601 0.91416 0.97476 1.70572 1.20738 1.24180 1.30894 0.83586 0.74438 0.76224 0.75653 1.20770 1.19034 1.22173 0.93288 0.94421 0.92169 0.89158 0.78488 0.93691 0.92487 0.93264 0.93898 0.77646 0.89829 0.90906 0.90484 0.91392 0.91556 0.89208 0.88862 0.87786 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.61 36.01 0.35 -1.44 16 2 C -0.15 -3.47 5.90 -104.31 -0.62 -4.09 16 3 C -0.15 -3.14 9.46 -39.77 -0.38 -3.52 16 4 C 0.10 2.05 6.67 -83.69 -0.56 1.49 16 5 N -0.76 -12.54 5.36 -58.50 -0.31 -12.86 16 6 C 0.16 2.31 4.17 -4.05 -0.02 2.29 16 7 C -0.09 -1.04 0.62 -153.69 -0.10 -1.13 16 8 C 0.10 1.07 6.19 37.16 0.23 1.30 16 9 O -0.57 -6.42 13.19 -35.23 -0.46 -6.88 16 10 C -0.12 -1.24 7.17 -25.83 -0.19 -1.42 16 11 C -0.14 -1.22 7.74 -25.82 -0.20 -1.42 16 12 C -0.12 -1.21 6.98 -25.91 -0.18 -1.39 16 13 C -0.14 -3.28 9.22 -39.77 -0.37 -3.64 16 14 C -0.20 -5.11 7.21 -39.26 -0.28 -5.40 16 15 C 0.07 1.75 5.11 -106.79 -0.55 1.20 16 16 C -0.52 -14.60 8.76 -37.87 -0.33 -14.93 16 17 H 0.07 2.12 6.52 -52.49 -0.34 1.78 16 18 C 0.04 1.12 5.41 -17.34 -0.09 1.03 16 19 N -0.84 -23.77 13.66 55.54 0.76 -23.01 16 20 Si 1.07 25.83 24.92 -169.99 -4.24 21.60 16 21 H -0.28 -6.46 6.44 56.52 0.36 -6.09 16 22 H -0.27 -6.38 7.04 56.52 0.40 -5.98 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.06 1.31 6.30 -51.93 -0.33 0.98 16 27 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 28 H 0.38 5.61 7.81 -40.82 -0.32 5.29 16 29 H 0.05 0.69 8.02 -51.93 -0.42 0.27 16 30 H 0.06 0.96 7.50 -51.93 -0.39 0.57 16 31 H 0.05 0.53 7.47 -51.93 -0.39 0.14 16 32 H 0.04 0.37 7.31 -51.93 -0.38 -0.01 16 33 H 0.38 2.62 9.12 45.56 0.42 3.04 16 34 H 0.08 0.84 8.05 -51.93 -0.42 0.43 16 35 H 0.07 0.76 8.01 -51.92 -0.42 0.34 16 36 H 0.08 0.59 7.61 -51.93 -0.40 0.20 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.09 1.93 6.68 -52.48 -0.35 1.58 16 41 H 0.10 2.63 4.51 -52.49 -0.24 2.40 16 42 H 0.28 7.76 8.73 -40.82 -0.36 7.41 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -30.23 330.20 -8.24 -38.47 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.68 Total: 8.76 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: -3.27 Total: -31.06 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.44 Total: -35.86 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.46 Total: -6.88 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -4.24 Total: 21.60 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.23 -8.24 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164361842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.378 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds