Wall clock time and date at job start Mon Mar 30 2020 02:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36353 * 120.08281 * 2 1 4 4 C 1.39543 * 120.16151 * 180.02562 * 3 2 1 5 5 N 1.38857 * 119.84466 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00440 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47405 * 176.09091 * 6 5 4 8 8 C 1.53002 * 112.84990 * 294.85375 * 7 6 5 9 9 O 1.42898 * 109.46849 * 295.13143 * 8 7 6 10 10 C 1.53777 * 113.61464 * 163.65419 * 7 6 5 11 11 C 1.53956 * 87.02342 * 220.04784 * 10 7 6 12 12 C 1.53787 * 113.61434 * 66.04597 * 7 6 5 13 13 C 1.39587 * 120.31538 * 359.97438 * 4 3 2 14 14 C 1.36321 * 120.16386 * 359.74289 * 13 4 3 15 15 C 1.40872 * 120.07959 * 180.02562 * 2 1 3 16 16 C 1.41135 * 120.15642 * 359.95042 * 15 2 1 17 17 H 1.07997 * 120.00021 * 30.12189 * 16 15 2 18 18 C 1.39866 * 120.00115 * 210.12626 * 16 15 2 19 19 N 1.30899 * 120.00299 * 197.51603 * 18 16 15 20 20 Si 1.86804 * 119.99696 * 17.51769 * 18 16 15 21 21 H 1.48500 * 109.46883 * 269.99850 * 20 18 16 22 22 H 1.48503 * 109.47371 * 30.00163 * 20 18 16 23 23 H 1.48508 * 109.46880 * 150.00029 * 20 18 16 24 24 H 1.09000 * 109.46998 * 269.97536 * 1 2 3 25 25 H 1.08999 * 109.47195 * 29.97568 * 1 2 3 26 26 H 1.08998 * 109.47581 * 149.97708 * 1 2 3 27 27 H 1.07997 * 119.92122 * 359.97438 * 3 2 1 28 28 H 0.97008 * 119.99818 * 359.97438 * 5 4 3 29 29 H 1.09005 * 109.47300 * 296.09145 * 6 5 4 30 30 H 1.08995 * 109.47352 * 56.09029 * 6 5 4 31 31 H 1.08997 * 109.47010 * 55.13163 * 8 7 6 32 32 H 1.09001 * 109.47260 * 175.12966 * 8 7 6 33 33 H 0.96699 * 114.00060 * 180.02562 * 9 8 7 34 34 H 1.08997 * 113.62093 * 334.57058 * 10 7 6 35 35 H 1.09009 * 113.61263 * 105.47452 * 10 7 6 36 36 H 1.09002 * 113.53799 * 270.81649 * 11 10 7 37 37 H 1.08994 * 113.74557 * 139.94000 * 11 10 7 38 38 H 1.08995 * 113.61849 * 254.53011 * 12 7 6 39 39 H 1.08997 * 113.61040 * 25.35220 * 12 7 6 40 40 H 1.08003 * 119.91877 * 180.02562 * 13 4 3 41 41 H 1.07996 * 120.08633 * 180.27634 * 14 13 4 42 42 H 0.96998 * 119.99618 * 355.02197 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1818 -0.0005 5 7 4.2753 2.3871 -0.0011 6 6 5.7402 2.3932 -0.0011 7 6 6.2443 3.8344 -0.1001 8 6 5.8809 4.5010 -1.4284 9 8 6.5510 3.8298 -2.4972 10 6 7.7237 3.9975 0.2866 11 6 7.3118 5.3010 0.9947 12 6 5.9067 4.6911 1.1317 13 6 4.2921 -0.0222 -0.0005 14 6 3.6221 -1.2094 0.0053 15 6 2.2131 -1.2190 -0.0005 16 6 1.5124 -2.4442 0.0000 17 1 0.5417 -2.5113 -0.4687 18 6 2.0751 -3.5714 0.6075 19 7 1.6161 -4.7645 0.3259 20 14 3.4818 -3.3741 1.8207 21 1 4.7748 -3.4282 1.0925 22 1 3.3582 -2.0665 2.5137 23 1 3.4305 -4.4710 2.8206 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6506 2.1152 -0.0004 28 1 3.7868 3.2252 -0.0014 29 1 6.1055 1.9432 0.9221 30 1 6.1059 1.8211 -0.8536 31 1 4.8033 4.4424 -1.5815 32 1 6.1884 5.5465 -1.4064 33 1 6.3668 4.2002 -3.3712 34 1 8.0848 3.2263 0.9670 35 1 8.3835 4.1530 -0.5670 36 1 7.3461 6.1775 0.3476 37 1 7.8138 5.4596 1.9491 38 1 5.1019 5.4056 0.9594 39 1 5.7687 4.1097 2.0433 40 1 5.3721 -0.0133 -0.0005 41 1 4.1697 -2.1402 0.0098 42 1 0.8399 -4.8626 -0.2474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164361842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:21 Heat of formation + Delta-G solvation = -40.359045 kcal Electronic energy + Delta-G solvation = -21251.767924 eV Core-core repulsion = 18195.544056 eV Total energy + Delta-G solvation = -3056.223868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95478 -39.92948 -36.96538 -36.64589 -34.94404 -33.04519 -31.55018 -29.20085 -28.08494 -26.88548 -26.42849 -25.13450 -23.41259 -22.93687 -20.81050 -19.97637 -19.28069 -18.27021 -17.99453 -16.91052 -16.37631 -16.16874 -15.92911 -15.78552 -15.41446 -14.87648 -14.67071 -14.43817 -14.23421 -14.04175 -13.83578 -13.60562 -13.25427 -13.05621 -12.99220 -12.64410 -12.60543 -12.34494 -12.21643 -11.86811 -11.67036 -11.46210 -11.23249 -11.13694 -11.02241 -10.88792 -10.72432 -10.32889 -9.37796 -9.19062 -8.25401 -6.17148 0.87175 1.02019 1.38291 1.56117 1.76185 2.25456 2.75651 2.77358 3.27455 3.56757 3.62701 3.69859 3.91366 4.04786 4.22162 4.27198 4.33359 4.48347 4.58050 4.60513 4.63961 4.72812 4.83763 4.87612 4.88892 4.94288 4.97374 5.00753 5.10503 5.13282 5.17833 5.22718 5.38160 5.47423 5.53436 5.62920 5.70667 5.75556 6.04034 6.20939 6.49031 6.64683 6.89139 6.91313 7.03576 7.23686 8.20283 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.004396 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.535896 B = 6367.857024 C = 6811.147299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.148 4.148 3 C -0.154 4.154 4 C 0.128 3.872 5 N -0.741 5.741 6 C 0.154 3.846 7 C -0.095 4.095 8 C 0.103 3.897 9 O -0.589 6.589 10 C -0.125 4.125 11 C -0.131 4.131 12 C -0.122 4.122 13 C -0.166 4.166 14 C -0.208 4.208 15 C 0.028 3.972 16 C -0.548 4.548 17 H 0.049 0.951 18 C 0.004 3.996 19 N -0.872 5.872 20 Si 1.105 2.895 21 H -0.267 1.267 22 H -0.266 1.266 23 H -0.285 1.285 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.126 0.874 28 H 0.398 0.602 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.394 0.606 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 22.324 0.082 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.149 4.149 3 C -0.176 4.176 4 C 0.028 3.972 5 N -0.375 5.375 6 C 0.030 3.970 7 C -0.096 4.096 8 C 0.025 3.975 9 O -0.397 6.397 10 C -0.163 4.163 11 C -0.168 4.168 12 C -0.160 4.160 13 C -0.188 4.188 14 C -0.228 4.228 15 C 0.024 3.976 16 C -0.580 4.580 17 H 0.067 0.933 18 C -0.206 4.206 19 N -0.500 5.500 20 Si 0.929 3.071 21 H -0.194 1.194 22 H -0.191 1.191 23 H -0.212 1.212 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.144 0.856 28 H 0.232 0.768 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.244 0.756 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.398 20.996 1.464 23.935 hybrid contribution -1.913 0.510 -1.799 2.675 sum 9.485 21.507 -0.335 23.508 Atomic orbital electron populations 1.20432 0.91659 1.00891 1.00996 1.19798 0.96027 0.92528 1.06595 1.20094 0.91962 0.97224 1.08367 1.17487 0.90817 0.86323 1.02620 1.43849 1.04470 1.04041 1.85167 1.21008 0.80547 0.96361 0.99122 1.22104 0.98431 0.93881 0.95158 1.21874 0.95441 0.94820 0.85360 1.86446 1.72813 1.61417 1.18987 1.22892 0.94339 0.98652 1.00402 1.22857 0.95873 0.96819 1.01244 1.22895 0.98382 0.98407 0.96285 1.20142 0.98386 0.91579 1.08713 1.20801 0.94351 0.97021 1.10597 1.17689 0.91884 0.93213 0.94788 1.20354 1.05462 0.96128 1.36014 0.93324 1.27998 1.03200 0.91113 0.98256 1.70646 1.21723 1.24721 1.32870 0.83171 0.73193 0.76230 0.74540 1.19375 1.19079 1.21219 0.92423 0.91059 0.94164 0.85584 0.76752 0.94029 0.94505 0.93569 0.91426 0.75645 0.90247 0.91221 0.89045 0.90446 0.90168 0.90069 0.87198 0.88650 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.38 9.61 71.24 0.68 -2.70 16 2 C -0.15 -6.86 5.90 -19.66 -0.12 -6.98 16 3 C -0.15 -6.16 9.46 22.14 0.21 -5.95 16 4 C 0.13 4.99 6.67 38.67 0.26 5.25 16 5 N -0.74 -21.96 5.36 -339.01 -1.82 -23.78 16 6 C 0.15 4.17 4.17 86.38 0.36 4.53 16 7 C -0.10 -1.83 0.62 -51.65 -0.03 -1.87 16 8 C 0.10 1.76 6.19 71.98 0.45 2.21 16 9 O -0.59 -11.80 13.19 -148.98 -1.96 -13.76 16 10 C -0.12 -2.17 7.17 31.18 0.22 -1.95 16 11 C -0.13 -1.70 7.74 31.18 0.24 -1.46 16 12 C -0.12 -1.90 6.98 31.13 0.22 -1.68 16 13 C -0.17 -7.27 9.22 22.15 0.20 -7.06 16 14 C -0.21 -10.47 7.21 22.48 0.16 -10.31 16 15 C 0.03 1.46 5.11 -21.27 -0.11 1.36 16 16 C -0.55 -31.88 8.76 23.38 0.20 -31.67 16 17 H 0.05 2.97 6.52 -2.91 -0.02 2.95 16 18 C 0.00 0.21 5.41 85.23 0.46 0.67 16 19 N -0.87 -51.88 13.66 21.82 0.30 -51.58 16 20 Si 1.11 53.32 24.92 68.60 1.71 55.03 16 21 H -0.27 -12.16 6.44 99.48 0.64 -11.52 16 22 H -0.27 -12.65 7.04 99.48 0.70 -11.95 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 26 H 0.04 1.78 6.30 -2.39 -0.02 1.76 16 27 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 28 H 0.40 9.87 7.81 -92.70 -0.72 9.14 16 29 H 0.04 1.18 8.02 -2.38 -0.02 1.16 16 30 H 0.04 1.17 7.50 -2.39 -0.02 1.15 16 31 H 0.05 0.81 7.47 -2.39 -0.02 0.79 16 32 H 0.07 0.85 7.31 -2.39 -0.02 0.83 16 33 H 0.39 4.46 9.12 -74.06 -0.68 3.78 16 34 H 0.08 1.43 8.05 -2.39 -0.02 1.41 16 35 H 0.07 1.26 8.01 -2.38 -0.02 1.24 16 36 H 0.09 0.97 7.61 -2.39 -0.02 0.95 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 40 H 0.11 4.39 6.68 -2.91 -0.02 4.37 16 41 H 0.10 4.88 4.51 -2.91 -0.01 4.87 16 42 H 0.27 16.00 8.73 -92.71 -0.81 15.19 16 Total: -1.00 -67.18 330.20 1.16 -66.01 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.48 Total: 25.69 kcal Atomic # 6 Polarization: -61.02 SS G_CDS: 3.41 Total: -57.61 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -1.52 Total: -75.36 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.96 Total: -13.76 kcal Atomic # 14 Polarization: 53.32 SS G_CDS: 1.71 Total: 55.03 kcal Total: -67.18 1.16 -66.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164361842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.655 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds