Wall clock time and date at job start Mon Mar 30 2020 02:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36354 * 119.92002 * 2 1 4 4 C 1.40870 * 119.83567 * 180.29572 * 3 2 1 5 5 C 1.41134 * 120.15337 * 179.74289 * 4 3 2 6 6 H 1.07994 * 120.00460 * 335.14119 * 5 4 3 7 7 C 1.39869 * 119.99916 * 155.14218 * 5 4 3 8 8 N 1.30904 * 120.00004 * 341.99989 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 161.99977 * 7 5 4 10 10 H 1.48501 * 109.47309 * 60.00115 * 9 7 5 11 11 H 1.48503 * 109.46761 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46893 * 299.99794 * 9 7 5 13 13 C 1.40900 * 119.68910 * 359.72263 * 4 3 2 14 14 C 1.36325 * 119.83890 * 0.02562 * 13 4 3 15 15 C 1.39552 * 119.91901 * 179.76597 * 2 1 3 16 16 N 1.38862 * 119.83968 * 359.97438 * 15 2 1 17 17 C 1.46500 * 119.99710 * 179.72465 * 16 15 2 18 18 C 1.52998 * 109.47001 * 182.59394 * 17 16 15 19 19 C 1.52999 * 112.85262 * 67.30482 * 18 17 16 20 20 O 1.42901 * 109.46566 * 54.06737 * 19 18 17 21 21 C 1.53784 * 113.61305 * 296.11105 * 18 17 16 22 22 C 1.53789 * 87.07891 * 219.93725 * 21 18 17 23 23 C 1.53773 * 87.17466 * 25.38848 * 22 21 18 24 24 H 1.09001 * 109.47239 * 270.23679 * 1 2 3 25 25 H 1.09005 * 109.47460 * 30.23695 * 1 2 3 26 26 H 1.08999 * 109.47347 * 150.23756 * 1 2 3 27 27 H 1.07996 * 120.08514 * 0.02562 * 3 2 1 28 28 H 0.96999 * 120.00314 * 180.02562 * 8 7 5 29 29 H 1.07999 * 120.08369 * 179.97438 * 13 4 3 30 30 H 1.07997 * 119.92229 * 180.02562 * 14 13 4 31 31 H 0.96995 * 120.00234 * 359.73653 * 16 15 2 32 32 H 1.09004 * 109.47344 * 62.59344 * 17 16 15 33 33 H 1.09002 * 109.47320 * 302.59538 * 17 16 15 34 34 H 1.08995 * 109.46967 * 174.06450 * 19 18 17 35 35 H 1.08993 * 109.47108 * 294.06700 * 19 18 17 36 36 H 0.96703 * 113.99602 * 179.97438 * 20 19 18 37 37 H 1.08996 * 113.61646 * 105.39039 * 21 18 17 38 38 H 1.09002 * 113.69294 * 334.49267 * 21 18 17 39 39 H 1.09005 * 113.61325 * 139.98463 * 22 21 18 40 40 H 1.09001 * 113.61249 * 270.79464 * 22 21 18 41 41 H 1.09006 * 113.61188 * 89.15787 * 23 22 21 42 42 H 1.08995 * 113.61582 * 220.06066 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1797 -0.0063 5 6 4.3065 2.3991 -0.0118 6 1 3.8436 3.2922 -0.4046 7 6 5.6105 2.4507 0.4914 8 7 6.0483 1.4971 1.2741 9 14 6.7273 3.8806 0.0468 10 1 6.1134 5.1509 0.5101 11 1 8.0473 3.7001 0.7026 12 1 6.9092 3.9270 -1.4263 13 6 4.2918 -0.0453 -0.0066 14 6 3.5988 -1.2192 -0.0014 15 6 2.2030 -1.2095 0.0049 16 7 1.5036 -2.4092 0.0104 17 6 2.2308 -3.6809 0.0095 18 6 1.2327 -4.8391 -0.0491 19 6 0.4785 -4.9068 -1.3785 20 8 1.4158 -4.9418 -2.4566 21 6 0.3174 -4.9263 1.1836 22 6 0.4873 -6.4527 1.1039 23 6 1.8245 -6.1903 0.3915 24 1 -0.3634 0.0042 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3634 -0.8921 -0.5101 27 1 1.6472 2.1171 0.0004 28 1 6.9524 1.5331 1.6234 29 1 5.3718 -0.0543 -0.0119 30 1 4.1310 -2.1590 -0.0012 31 1 0.5337 -2.4051 0.0146 32 1 2.8260 -3.7599 0.9193 33 1 2.8879 -3.7232 -0.8592 34 1 -0.1362 -5.8065 -1.4020 35 1 -0.1590 -4.0285 -1.4797 36 1 1.0070 -4.9857 -3.3319 37 1 -0.7021 -4.5900 0.9951 38 1 0.7493 -4.4853 2.0820 39 1 0.5974 -6.9312 2.0771 40 1 -0.2548 -6.9422 0.4732 41 1 2.6706 -6.0953 1.0722 42 1 2.0200 -6.8729 -0.4355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164362072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:48 Heat of formation + Delta-G solvation = -16.746434 kcal Electronic energy + Delta-G solvation = -21269.851288 eV Core-core repulsion = 18214.651340 eV Total energy + Delta-G solvation = -3055.199948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.93714 -37.97469 -36.09370 -34.73109 -32.97265 -31.22479 -29.43968 -27.87866 -26.08441 -25.73039 -25.61651 -23.82605 -22.29763 -20.10173 -19.85215 -18.30717 -17.40338 -16.78785 -16.41196 -15.59203 -15.04564 -14.92317 -14.72298 -13.87706 -13.60287 -13.53691 -13.18777 -12.76321 -12.73656 -12.47631 -12.38127 -11.86651 -11.79650 -11.59895 -11.48105 -11.43150 -10.96644 -10.85417 -10.69556 -10.51840 -10.39774 -10.31631 -10.13681 -9.83768 -9.58451 -9.21481 -9.11844 -8.41621 -7.27052 -6.55683 -6.25353 -3.95559 2.99500 3.13078 3.18121 3.21571 3.42419 3.95577 4.10808 4.32751 4.56692 4.67047 4.72562 4.82286 4.99451 5.10496 5.25938 5.46689 5.53622 5.70766 5.74542 5.81036 5.82494 5.92104 5.96338 6.02951 6.11837 6.21063 6.34066 6.37214 6.42426 6.47052 6.60978 6.99355 7.03177 7.30478 7.46544 7.59186 7.64943 7.79723 7.94332 8.23181 8.38676 8.58006 8.80049 8.89598 9.13421 9.23882 10.44767 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.003955 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.555180 B = 7078.371155 C = 7400.742803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.138 4.138 3 C -0.183 4.183 4 C 0.075 3.925 5 C -0.469 4.469 6 H 0.071 0.929 7 C 0.076 3.924 8 N -0.809 5.809 9 Si 0.902 3.098 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.267 1.267 13 C -0.124 4.124 14 C -0.163 4.163 15 C 0.103 3.897 16 N -0.756 5.756 17 C 0.159 3.841 18 C -0.092 4.092 19 C 0.104 3.896 20 O -0.563 6.563 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.123 4.123 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.276 0.724 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.381 0.619 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.376 0.624 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 -13.352 -2.352 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C -0.204 4.204 4 C 0.072 3.928 5 C -0.500 4.500 6 H 0.089 0.911 7 C -0.139 4.139 8 N -0.437 5.437 9 Si 0.727 3.273 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.191 1.191 13 C -0.143 4.143 14 C -0.185 4.185 15 C 0.006 3.994 16 N -0.393 5.393 17 C 0.034 3.966 18 C -0.093 4.093 19 C 0.027 3.973 20 O -0.368 6.368 21 C -0.163 4.163 22 C -0.181 4.181 23 C -0.161 4.161 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.215 0.785 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.222 0.778 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.882 -13.498 -1.708 16.248 hybrid contribution -0.144 0.642 -0.525 0.842 sum -9.026 -12.855 -2.233 15.866 Atomic orbital electron populations 1.20457 0.94217 1.00180 1.00039 1.18618 0.93287 0.92386 1.09860 1.20418 0.94249 0.94761 1.10930 1.17447 0.90628 0.93165 0.91565 1.19308 0.97812 0.95859 1.37059 0.91104 1.25769 0.98443 0.96852 0.92862 1.69853 1.17609 1.32564 1.23655 0.86491 0.79096 0.81969 0.79760 1.19334 1.20634 1.19141 1.20916 0.99581 0.91112 1.02740 1.20080 0.91656 0.97456 1.09318 1.17143 0.90844 0.84354 1.07059 1.43849 1.06355 1.02014 1.87038 1.20847 0.93320 0.82255 1.00223 1.22068 0.97364 0.96421 0.93411 1.21801 0.90334 0.99079 0.86126 1.86520 1.35970 1.97469 1.16816 1.22912 0.99434 0.96090 0.97828 1.22874 0.97927 0.96577 1.00768 1.22907 0.97164 0.95922 1.00104 0.93340 0.93000 0.93940 0.89190 0.91369 0.86553 0.89429 0.78516 0.93882 0.92493 0.93938 0.93529 0.77769 0.91609 0.89171 0.91423 0.90505 0.89747 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.55 36.00 0.34 -1.30 16 2 C -0.14 -3.12 5.86 -104.81 -0.61 -3.73 16 3 C -0.18 -4.65 9.37 -39.27 -0.37 -5.01 16 4 C 0.07 2.08 5.57 -106.80 -0.59 1.48 16 5 C -0.47 -13.07 9.03 -37.87 -0.34 -13.41 16 6 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 7 C 0.08 2.00 5.13 -17.34 -0.09 1.91 16 8 N -0.81 -22.04 10.98 55.54 0.61 -21.43 16 9 Si 0.90 19.70 29.60 -169.99 -5.03 14.67 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 C -0.12 -3.35 8.63 -39.26 -0.34 -3.69 16 14 C -0.16 -3.99 9.23 -39.77 -0.37 -4.36 16 15 C 0.10 2.32 6.65 -83.68 -0.56 1.77 16 16 N -0.76 -13.60 5.37 -58.50 -0.31 -13.91 16 17 C 0.16 2.56 4.12 -4.04 -0.02 2.55 16 18 C -0.09 -1.12 0.68 -153.60 -0.10 -1.23 16 19 C 0.10 1.16 6.20 37.16 0.23 1.39 16 20 O -0.56 -6.88 12.89 -35.23 -0.45 -7.34 16 21 C -0.13 -1.33 6.89 -25.91 -0.18 -1.51 16 22 C -0.14 -1.32 7.72 -25.92 -0.20 -1.52 16 23 C -0.12 -1.33 7.24 -25.83 -0.19 -1.51 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 26 H 0.04 0.67 6.54 -51.93 -0.34 0.33 16 27 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 29 H 0.12 3.27 6.18 -52.49 -0.32 2.95 16 30 H 0.09 2.00 6.68 -52.49 -0.35 1.65 16 31 H 0.38 6.17 5.88 -40.82 -0.24 5.93 16 32 H 0.04 0.73 7.94 -51.93 -0.41 0.32 16 33 H 0.06 1.04 7.21 -51.93 -0.37 0.67 16 34 H 0.04 0.39 7.31 -51.93 -0.38 0.01 16 35 H 0.05 0.52 7.82 -51.93 -0.41 0.12 16 36 H 0.38 2.89 9.12 45.56 0.42 3.31 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.62 7.61 -51.93 -0.40 0.23 16 41 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 42 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -30.25 335.29 -9.24 -39.50 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.72 Total: 11.63 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -3.38 Total: -28.17 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.30 Total: -35.34 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.45 Total: -7.34 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.25 -9.24 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164362072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.751 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds