Wall clock time and date at job start Mon Mar 30 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36354 * 119.92002 * 2 1 4 4 C 1.40870 * 119.83567 * 180.29572 * 3 2 1 5 5 C 1.41134 * 120.15337 * 179.74289 * 4 3 2 6 6 H 1.07994 * 120.00460 * 335.14119 * 5 4 3 7 7 C 1.39869 * 119.99916 * 155.14218 * 5 4 3 8 8 N 1.30904 * 120.00004 * 341.99989 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 161.99977 * 7 5 4 10 10 H 1.48501 * 109.47309 * 60.00115 * 9 7 5 11 11 H 1.48503 * 109.46761 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46893 * 299.99794 * 9 7 5 13 13 C 1.40900 * 119.68910 * 359.72263 * 4 3 2 14 14 C 1.36325 * 119.83890 * 0.02562 * 13 4 3 15 15 C 1.39552 * 119.91901 * 179.76597 * 2 1 3 16 16 N 1.38862 * 119.83968 * 359.97438 * 15 2 1 17 17 C 1.46500 * 119.99710 * 179.72465 * 16 15 2 18 18 C 1.52998 * 109.47001 * 182.59394 * 17 16 15 19 19 C 1.52999 * 112.85262 * 67.30482 * 18 17 16 20 20 O 1.42901 * 109.46566 * 54.06737 * 19 18 17 21 21 C 1.53784 * 113.61305 * 296.11105 * 18 17 16 22 22 C 1.53789 * 87.07891 * 219.93725 * 21 18 17 23 23 C 1.53773 * 87.17466 * 25.38848 * 22 21 18 24 24 H 1.09001 * 109.47239 * 270.23679 * 1 2 3 25 25 H 1.09005 * 109.47460 * 30.23695 * 1 2 3 26 26 H 1.08999 * 109.47347 * 150.23756 * 1 2 3 27 27 H 1.07996 * 120.08514 * 0.02562 * 3 2 1 28 28 H 0.96999 * 120.00314 * 180.02562 * 8 7 5 29 29 H 1.07999 * 120.08369 * 179.97438 * 13 4 3 30 30 H 1.07997 * 119.92229 * 180.02562 * 14 13 4 31 31 H 0.96995 * 120.00234 * 359.73653 * 16 15 2 32 32 H 1.09004 * 109.47344 * 62.59344 * 17 16 15 33 33 H 1.09002 * 109.47320 * 302.59538 * 17 16 15 34 34 H 1.08995 * 109.46967 * 174.06450 * 19 18 17 35 35 H 1.08993 * 109.47108 * 294.06700 * 19 18 17 36 36 H 0.96703 * 113.99602 * 179.97438 * 20 19 18 37 37 H 1.08996 * 113.61646 * 105.39039 * 21 18 17 38 38 H 1.09002 * 113.69294 * 334.49267 * 21 18 17 39 39 H 1.09005 * 113.61325 * 139.98463 * 22 21 18 40 40 H 1.09001 * 113.61249 * 270.79464 * 22 21 18 41 41 H 1.09006 * 113.61188 * 89.15787 * 23 22 21 42 42 H 1.08995 * 113.61582 * 220.06066 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1797 -0.0063 5 6 4.3065 2.3991 -0.0118 6 1 3.8436 3.2922 -0.4046 7 6 5.6105 2.4507 0.4914 8 7 6.0483 1.4971 1.2741 9 14 6.7273 3.8806 0.0468 10 1 6.1134 5.1509 0.5101 11 1 8.0473 3.7001 0.7026 12 1 6.9092 3.9270 -1.4263 13 6 4.2918 -0.0453 -0.0066 14 6 3.5988 -1.2192 -0.0014 15 6 2.2030 -1.2095 0.0049 16 7 1.5036 -2.4092 0.0104 17 6 2.2308 -3.6809 0.0095 18 6 1.2327 -4.8391 -0.0491 19 6 0.4785 -4.9068 -1.3785 20 8 1.4158 -4.9418 -2.4566 21 6 0.3174 -4.9263 1.1836 22 6 0.4873 -6.4527 1.1039 23 6 1.8245 -6.1903 0.3915 24 1 -0.3634 0.0042 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3634 -0.8921 -0.5101 27 1 1.6472 2.1171 0.0004 28 1 6.9524 1.5331 1.6234 29 1 5.3718 -0.0543 -0.0119 30 1 4.1310 -2.1590 -0.0012 31 1 0.5337 -2.4051 0.0146 32 1 2.8260 -3.7599 0.9193 33 1 2.8879 -3.7232 -0.8592 34 1 -0.1362 -5.8065 -1.4020 35 1 -0.1590 -4.0285 -1.4797 36 1 1.0070 -4.9857 -3.3319 37 1 -0.7021 -4.5900 0.9951 38 1 0.7493 -4.4853 2.0820 39 1 0.5974 -6.9312 2.0771 40 1 -0.2548 -6.9422 0.4732 41 1 2.6706 -6.0953 1.0722 42 1 2.0200 -6.8729 -0.4355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164362072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:47 Heat of formation + Delta-G solvation = -35.705383 kcal Electronic energy + Delta-G solvation = -21270.673410 eV Core-core repulsion = 18214.651340 eV Total energy + Delta-G solvation = -3056.022070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94311 -39.74311 -36.96626 -36.49881 -34.73856 -33.03807 -31.11241 -29.22285 -27.49997 -27.17882 -26.63617 -25.54000 -23.42356 -21.84589 -21.68578 -19.27255 -18.74033 -18.28694 -17.98123 -16.81987 -16.73205 -16.25632 -15.95320 -15.38670 -14.98511 -14.76699 -14.48100 -14.42175 -14.13909 -13.97255 -13.60059 -13.50434 -13.26853 -13.16431 -12.79155 -12.74300 -12.60632 -12.33526 -12.30068 -12.12885 -11.52164 -11.39527 -11.27437 -11.20345 -11.05935 -10.99638 -10.72354 -10.25147 -9.21976 -8.52691 -8.08903 -5.99219 1.12724 1.17595 1.38971 1.50350 1.60180 2.27345 2.82978 2.86172 3.29176 3.64583 3.70449 3.83521 3.91884 4.06526 4.20788 4.35965 4.43393 4.48411 4.60658 4.64926 4.69032 4.85308 4.87568 4.88437 4.94202 4.97808 5.02175 5.10527 5.11015 5.14230 5.17384 5.32854 5.38626 5.53367 5.54230 5.71035 5.90089 6.00415 6.21638 6.42271 6.68876 6.88828 6.94007 7.09591 7.17583 7.36913 8.49539 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.003955 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.555180 B = 7078.371155 C = 7400.742803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.143 4.143 3 C -0.194 4.194 4 C 0.037 3.963 5 C -0.508 4.508 6 H 0.068 0.932 7 C 0.032 3.968 8 N -0.844 5.844 9 Si 0.977 3.023 10 H -0.260 1.260 11 H -0.270 1.270 12 H -0.264 1.264 13 C -0.147 4.147 14 C -0.177 4.177 15 C 0.115 3.885 16 N -0.740 5.740 17 C 0.160 3.840 18 C -0.096 4.096 19 C 0.104 3.896 20 O -0.589 6.589 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.126 4.126 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.281 0.719 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.395 0.605 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.394 0.606 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 -14.527 -2.583 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C -0.214 4.214 4 C 0.034 3.966 5 C -0.540 4.540 6 H 0.086 0.914 7 C -0.180 4.180 8 N -0.472 5.472 9 Si 0.798 3.202 10 H -0.185 1.185 11 H -0.195 1.195 12 H -0.188 1.188 13 C -0.168 4.168 14 C -0.199 4.199 15 C 0.016 3.984 16 N -0.376 5.376 17 C 0.035 3.965 18 C -0.096 4.096 19 C 0.026 3.974 20 O -0.397 6.397 21 C -0.162 4.162 22 C -0.165 4.165 23 C -0.164 4.164 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.231 0.769 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.152 -14.708 -1.949 18.561 hybrid contribution 0.450 0.869 -0.465 1.084 sum -10.702 -13.839 -2.414 17.660 Atomic orbital electron populations 1.20481 0.90222 1.02045 1.01603 1.19104 0.96241 0.91339 1.08047 1.20654 0.93639 0.96247 1.10837 1.17782 0.92074 0.93474 0.93258 1.19561 0.99470 0.96027 1.38893 0.91394 1.26623 0.99417 0.99832 0.92118 1.69932 1.18204 1.34582 1.24500 0.85350 0.77096 0.78349 0.79407 1.18468 1.19485 1.18824 1.20798 0.98742 0.92180 1.05045 1.20192 0.92986 0.96902 1.09816 1.17278 0.90364 0.86197 1.04603 1.43821 1.06971 1.01233 1.85614 1.20875 0.94225 0.82957 0.98438 1.22160 0.97188 0.95058 0.95230 1.21871 0.90006 1.00458 0.85015 1.86478 1.37345 1.97570 1.18280 1.22893 0.99621 0.97435 0.96213 1.22828 0.96833 0.95505 1.01369 1.22932 0.98092 0.95109 1.00286 0.91738 0.91823 0.91487 0.88598 0.90862 0.88759 0.88753 0.76902 0.95147 0.94869 0.91127 0.93486 0.75684 0.90040 0.90538 0.90465 0.88590 0.90588 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.83 9.55 71.23 0.68 -2.15 16 2 C -0.14 -6.37 5.86 -19.99 -0.12 -6.49 16 3 C -0.19 -9.97 9.37 22.47 0.21 -9.76 16 4 C 0.04 2.14 5.57 -21.27 -0.12 2.02 16 5 C -0.51 -29.54 9.03 23.38 0.21 -29.33 16 6 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 7 C 0.03 1.73 5.13 85.23 0.44 2.17 16 8 N -0.84 -47.90 10.98 21.82 0.24 -47.66 16 9 Si 0.98 41.41 29.60 68.60 2.03 43.44 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 C -0.15 -8.42 8.63 22.48 0.19 -8.23 16 14 C -0.18 -8.93 9.23 22.15 0.20 -8.73 16 15 C 0.12 5.15 6.65 38.67 0.26 5.41 16 16 N -0.74 -25.54 5.37 -338.98 -1.82 -27.37 16 17 C 0.16 5.08 4.12 86.38 0.36 5.43 16 18 C -0.10 -2.13 0.68 -51.59 -0.03 -2.17 16 19 C 0.10 2.00 6.20 71.98 0.45 2.44 16 20 O -0.59 -13.27 12.89 -148.98 -1.92 -15.20 16 21 C -0.12 -2.28 6.89 31.12 0.21 -2.06 16 22 C -0.13 -1.90 7.72 31.12 0.24 -1.66 16 23 C -0.13 -2.47 7.24 31.18 0.23 -2.25 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 1.95 8.08 -2.38 -0.02 1.93 16 26 H 0.07 1.85 6.54 -2.39 -0.02 1.83 16 27 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 28 H 0.28 14.58 8.30 -92.71 -0.77 13.81 16 29 H 0.09 5.68 6.18 -2.91 -0.02 5.66 16 30 H 0.09 4.50 6.68 -2.91 -0.02 4.48 16 31 H 0.39 11.61 5.88 -92.71 -0.55 11.06 16 32 H 0.03 1.04 7.94 -2.38 -0.02 1.02 16 33 H 0.03 1.22 7.21 -2.39 -0.02 1.20 16 34 H 0.07 0.98 7.31 -2.39 -0.02 0.96 16 35 H 0.05 0.89 7.82 -2.39 -0.02 0.87 16 36 H 0.39 5.24 9.12 -74.05 -0.68 4.57 16 37 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.10 1.10 7.61 -2.39 -0.02 1.08 16 41 H 0.08 1.60 8.03 -2.38 -0.02 1.58 16 42 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -68.49 335.29 1.74 -66.75 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.19 Total: 35.39 kcal Atomic # 6 Polarization: -58.76 SS G_CDS: 3.41 Total: -55.35 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -1.58 Total: -75.03 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.92 Total: -15.20 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -68.49 1.74 -66.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164362072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.042 kcal (2) G-P(sol) polarization free energy of solvation -68.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds