Wall clock time and date at job start Mon Mar 30 2020 02:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36358 * 120.07909 * 2 1 4 4 C 1.39545 * 120.16085 * 180.02562 * 3 2 1 5 5 N 1.38857 * 119.84365 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00269 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47392 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47907 * 304.98161 * 7 6 5 9 9 C 1.53091 * 109.48444 * 184.94736 * 7 6 5 10 10 C 1.53177 * 109.16579 * 182.40713 * 9 7 6 11 11 C 1.53173 * 109.03517 * 56.97933 * 10 9 7 12 12 C 1.53092 * 109.16495 * 303.01905 * 11 10 9 13 13 O 1.42904 * 109.48110 * 64.99851 * 7 6 5 14 14 C 1.39584 * 120.31616 * 359.95885 * 4 3 2 15 15 C 1.36317 * 120.16121 * 0.02562 * 14 4 3 16 16 C 1.40863 * 120.08133 * 179.97438 * 2 1 3 17 17 C 1.41136 * 120.15644 * 0.25498 * 16 2 1 18 18 H 1.07998 * 119.99742 * 333.36324 * 17 16 2 19 19 C 1.39860 * 119.99946 * 153.37019 * 17 16 2 20 20 N 1.30905 * 120.00097 * 343.93770 * 19 17 16 21 21 Si 1.86796 * 120.00152 * 163.94565 * 19 17 16 22 22 H 1.48495 * 109.47608 * 89.99559 * 21 19 17 23 23 H 1.48501 * 109.47348 * 209.99808 * 21 19 17 24 24 H 1.48504 * 109.47137 * 329.99384 * 21 19 17 25 25 H 1.09003 * 109.46917 * 269.99857 * 1 2 3 26 26 H 1.09001 * 109.46994 * 29.99566 * 1 2 3 27 27 H 1.08995 * 109.47032 * 149.99902 * 1 2 3 28 28 H 1.08007 * 119.91991 * 0.02562 * 3 2 1 29 29 H 0.97004 * 119.99941 * 359.97438 * 5 4 3 30 30 H 1.09005 * 109.46996 * 300.00553 * 6 5 4 31 31 H 1.08997 * 109.47125 * 60.00503 * 6 5 4 32 32 H 1.09006 * 109.51813 * 302.30998 * 9 7 6 33 33 H 1.08997 * 109.52606 * 62.49364 * 9 7 6 34 34 H 1.08996 * 109.54245 * 297.10777 * 10 9 7 35 35 H 1.08996 * 109.61619 * 176.88578 * 10 9 7 36 36 H 1.08998 * 109.52452 * 183.11431 * 11 10 9 37 37 H 1.09002 * 109.52864 * 62.92635 * 11 10 9 38 38 H 1.09002 * 109.47883 * 297.62971 * 12 11 10 39 39 H 1.09002 * 109.48543 * 177.59272 * 12 11 10 40 40 H 1.07997 * 119.92482 * 179.97438 * 14 4 3 41 41 H 1.07999 * 120.08477 * 179.97438 * 15 14 4 42 42 H 0.97003 * 120.00037 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1800 0.0000 4 6 3.5859 1.1819 -0.0005 5 7 4.2752 2.3874 -0.0011 6 6 5.7402 2.3935 -0.0011 7 6 6.2441 3.8381 -0.0011 8 1 5.8076 4.3753 -0.8430 9 6 7.7700 3.8466 -0.1255 10 6 8.2715 5.2926 -0.0643 11 6 7.7912 5.9331 1.2416 12 6 6.2645 5.8441 1.3133 13 8 5.8635 4.4756 1.2199 14 6 4.2922 -0.0220 -0.0002 15 6 3.6222 -1.2092 0.0001 16 6 2.2131 -1.2189 0.0005 17 6 1.5125 -2.4441 -0.0043 18 1 0.5171 -2.4985 0.4111 19 6 2.1074 -3.5876 -0.5470 20 7 3.1568 -3.4748 -1.3214 21 14 1.4044 -5.2760 -0.1670 22 1 0.3821 -5.6273 -1.1851 23 1 2.4950 -6.2836 -0.1924 24 1 0.7771 -5.2596 1.1790 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6504 2.1153 0.0004 29 1 3.7867 3.2254 -0.0014 30 1 6.1056 1.8815 0.8891 31 1 6.1056 1.8809 -0.8908 32 1 8.2054 3.2750 0.6942 33 1 8.0604 3.4002 -1.0766 34 1 7.8757 5.8520 -0.9119 35 1 9.3609 5.3038 -0.0967 36 1 8.0967 6.9790 1.2683 37 1 8.2270 5.4037 2.0889 38 1 5.8285 6.4077 0.4884 39 1 5.9201 6.2600 2.2601 40 1 5.3721 -0.0131 -0.0011 41 1 4.1699 -2.1400 -0.0001 42 1 3.5691 -4.2679 -1.6980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165240869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:32 Heat of formation + Delta-G solvation = -43.799849 kcal Electronic energy + Delta-G solvation = -20861.877702 eV Core-core repulsion = 17805.504630 eV Total energy + Delta-G solvation = -3056.373073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.57383 -37.97113 -35.26339 -33.76120 -33.18736 -31.77908 -30.63707 -28.77682 -26.74202 -25.70108 -24.33346 -23.63450 -22.13834 -20.87705 -20.32000 -18.99980 -17.02815 -16.50749 -16.41209 -15.53955 -15.15722 -14.88487 -14.57600 -14.44489 -13.78620 -13.45113 -13.24453 -12.84983 -12.70359 -12.59598 -12.41633 -12.16430 -11.64586 -11.49446 -11.41028 -11.29974 -11.06011 -10.97890 -10.88938 -10.78075 -10.66945 -10.42752 -10.28955 -9.55813 -9.47838 -9.18945 -9.12313 -8.38367 -7.25840 -6.55953 -6.27984 -3.96286 2.96125 3.13455 3.18191 3.23234 3.41361 3.69239 4.10284 4.25029 4.58779 4.66490 4.68389 4.83302 4.96392 5.03954 5.17347 5.28641 5.43528 5.52978 5.61734 5.71146 5.77368 5.82056 5.85266 5.99350 6.05142 6.19380 6.32477 6.35382 6.51805 6.77244 6.80122 6.99616 7.08582 7.19676 7.29597 7.43721 7.68951 7.82533 7.90292 8.21983 8.39246 8.56917 8.78909 8.87815 9.13339 9.23326 10.44900 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033986 B = 0.003456 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.659237 B = 8100.813756 C = 8709.654775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.156 4.156 3 C -0.159 4.159 4 C 0.101 3.899 5 N -0.757 5.757 6 C 0.148 3.852 7 C 0.082 3.918 8 H 0.060 0.940 9 C -0.149 4.149 10 C -0.121 4.121 11 C -0.157 4.157 12 C 0.059 3.941 13 O -0.370 6.370 14 C -0.171 4.171 15 C -0.119 4.119 16 C 0.076 3.924 17 C -0.463 4.463 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.811 5.811 21 Si 0.900 3.100 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.264 1.264 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.386 0.614 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.323 14.080 1.705 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.158 4.158 3 C -0.181 4.181 4 C 0.003 3.997 5 N -0.392 5.392 6 C 0.023 3.977 7 C 0.024 3.976 8 H 0.078 0.922 9 C -0.187 4.187 10 C -0.159 4.159 11 C -0.195 4.195 12 C -0.018 4.018 13 O -0.289 6.289 14 C -0.192 4.192 15 C -0.139 4.139 16 C 0.073 3.927 17 C -0.494 4.494 18 H 0.092 0.908 19 C -0.141 4.141 20 N -0.439 5.439 21 Si 0.726 3.274 22 H -0.199 1.199 23 H -0.204 1.204 24 H -0.188 1.188 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.219 0.781 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.555 13.737 1.707 16.273 hybrid contribution -0.106 -0.304 -0.156 0.358 sum 8.449 13.433 1.550 15.945 Atomic orbital electron populations 1.20414 0.93727 1.00454 0.99584 1.19306 0.94128 0.92750 1.09662 1.19648 0.91511 0.96422 1.10549 1.17344 0.90652 0.85075 1.06596 1.43745 1.02996 1.05364 1.87141 1.21016 0.83193 0.92616 1.00905 1.22366 0.93713 0.94377 0.87176 0.92238 1.22143 0.95985 0.97305 1.03286 1.21571 1.00882 0.95871 0.97553 1.22199 0.97288 1.01254 0.98719 1.22544 0.93598 0.83732 1.01881 1.88048 1.78535 1.23958 1.38391 1.20069 0.97045 0.92049 1.10086 1.20900 0.94637 0.96000 1.02352 1.17340 0.91605 0.91600 0.92160 1.19332 1.01980 0.92770 1.35351 0.90813 1.25783 0.94445 1.00791 0.93052 1.69854 1.19372 1.31032 1.23608 0.86450 0.79222 0.81870 0.79887 1.19861 1.20442 1.18764 0.94045 0.94546 0.91945 0.89636 0.78149 0.92750 0.92121 0.90702 0.90572 0.91918 0.91480 0.91153 0.91028 0.93470 0.89049 0.89543 0.86491 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.40 36.01 0.34 -1.49 16 2 C -0.16 -3.90 5.90 -104.31 -0.62 -4.51 16 3 C -0.16 -3.70 9.46 -39.77 -0.38 -4.08 16 4 C 0.10 2.28 6.67 -83.69 -0.56 1.72 16 5 N -0.76 -14.04 5.65 -58.50 -0.33 -14.37 16 6 C 0.15 2.33 4.56 -4.05 -0.02 2.31 16 7 C 0.08 1.03 2.68 -26.69 -0.07 0.95 16 8 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 9 C -0.15 -1.52 5.42 -26.59 -0.14 -1.66 16 10 C -0.12 -1.02 6.03 -26.55 -0.16 -1.18 16 11 C -0.16 -1.31 6.14 -26.59 -0.16 -1.48 16 12 C 0.06 0.59 6.84 37.20 0.25 0.84 16 13 O -0.37 -5.01 10.35 -35.23 -0.36 -5.38 16 14 C -0.17 -4.11 9.23 -39.77 -0.37 -4.48 16 15 C -0.12 -3.18 8.61 -39.26 -0.34 -3.52 16 16 C 0.08 2.07 5.56 -106.79 -0.59 1.47 16 17 C -0.46 -12.58 8.09 -37.88 -0.31 -12.88 16 18 H 0.07 1.93 6.89 -52.49 -0.36 1.57 16 19 C 0.07 1.92 5.16 -17.34 -0.09 1.83 16 20 N -0.81 -21.76 10.97 55.54 0.61 -21.15 16 21 Si 0.90 19.46 29.59 -169.99 -5.03 14.43 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 24 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.06 1.37 6.77 -51.93 -0.35 1.02 16 28 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 29 H 0.39 6.64 8.47 -40.82 -0.35 6.29 16 30 H 0.05 0.91 7.93 -51.93 -0.41 0.50 16 31 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.90 6.68 -52.49 -0.35 1.55 16 41 H 0.12 3.24 6.23 -52.49 -0.33 2.91 16 42 H 0.27 6.77 8.30 -40.82 -0.34 6.43 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -29.11 334.37 -10.05 -39.16 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.76 Total: 8.42 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -3.21 Total: -26.15 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.28 Total: -35.52 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.36 Total: -5.38 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.11 -10.05 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165240869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.640 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds