Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36358 * 120.07909 * 2 1 4 4 C 1.39545 * 120.16085 * 180.02562 * 3 2 1 5 5 N 1.38857 * 119.84365 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00269 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47392 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47907 * 304.98161 * 7 6 5 9 9 C 1.53091 * 109.48444 * 184.94736 * 7 6 5 10 10 C 1.53177 * 109.16579 * 182.40713 * 9 7 6 11 11 C 1.53173 * 109.03517 * 56.97933 * 10 9 7 12 12 C 1.53092 * 109.16495 * 303.01905 * 11 10 9 13 13 O 1.42904 * 109.48110 * 64.99851 * 7 6 5 14 14 C 1.39584 * 120.31616 * 359.95885 * 4 3 2 15 15 C 1.36317 * 120.16121 * 0.02562 * 14 4 3 16 16 C 1.40863 * 120.08133 * 179.97438 * 2 1 3 17 17 C 1.41136 * 120.15644 * 0.25498 * 16 2 1 18 18 H 1.07998 * 119.99742 * 333.36324 * 17 16 2 19 19 C 1.39860 * 119.99946 * 153.37019 * 17 16 2 20 20 N 1.30905 * 120.00097 * 343.93770 * 19 17 16 21 21 Si 1.86796 * 120.00152 * 163.94565 * 19 17 16 22 22 H 1.48495 * 109.47608 * 89.99559 * 21 19 17 23 23 H 1.48501 * 109.47348 * 209.99808 * 21 19 17 24 24 H 1.48504 * 109.47137 * 329.99384 * 21 19 17 25 25 H 1.09003 * 109.46917 * 269.99857 * 1 2 3 26 26 H 1.09001 * 109.46994 * 29.99566 * 1 2 3 27 27 H 1.08995 * 109.47032 * 149.99902 * 1 2 3 28 28 H 1.08007 * 119.91991 * 0.02562 * 3 2 1 29 29 H 0.97004 * 119.99941 * 359.97438 * 5 4 3 30 30 H 1.09005 * 109.46996 * 300.00553 * 6 5 4 31 31 H 1.08997 * 109.47125 * 60.00503 * 6 5 4 32 32 H 1.09006 * 109.51813 * 302.30998 * 9 7 6 33 33 H 1.08997 * 109.52606 * 62.49364 * 9 7 6 34 34 H 1.08996 * 109.54245 * 297.10777 * 10 9 7 35 35 H 1.08996 * 109.61619 * 176.88578 * 10 9 7 36 36 H 1.08998 * 109.52452 * 183.11431 * 11 10 9 37 37 H 1.09002 * 109.52864 * 62.92635 * 11 10 9 38 38 H 1.09002 * 109.47883 * 297.62971 * 12 11 10 39 39 H 1.09002 * 109.48543 * 177.59272 * 12 11 10 40 40 H 1.07997 * 119.92482 * 179.97438 * 14 4 3 41 41 H 1.07999 * 120.08477 * 179.97438 * 15 14 4 42 42 H 0.97003 * 120.00037 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1800 0.0000 4 6 3.5859 1.1819 -0.0005 5 7 4.2752 2.3874 -0.0011 6 6 5.7402 2.3935 -0.0011 7 6 6.2441 3.8381 -0.0011 8 1 5.8076 4.3753 -0.8430 9 6 7.7700 3.8466 -0.1255 10 6 8.2715 5.2926 -0.0643 11 6 7.7912 5.9331 1.2416 12 6 6.2645 5.8441 1.3133 13 8 5.8635 4.4756 1.2199 14 6 4.2922 -0.0220 -0.0002 15 6 3.6222 -1.2092 0.0001 16 6 2.2131 -1.2189 0.0005 17 6 1.5125 -2.4441 -0.0043 18 1 0.5171 -2.4985 0.4111 19 6 2.1074 -3.5876 -0.5470 20 7 3.1568 -3.4748 -1.3214 21 14 1.4044 -5.2760 -0.1670 22 1 0.3821 -5.6273 -1.1851 23 1 2.4950 -6.2836 -0.1924 24 1 0.7771 -5.2596 1.1790 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6504 2.1153 0.0004 29 1 3.7867 3.2254 -0.0014 30 1 6.1056 1.8815 0.8891 31 1 6.1056 1.8809 -0.8908 32 1 8.2054 3.2750 0.6942 33 1 8.0604 3.4002 -1.0766 34 1 7.8757 5.8520 -0.9119 35 1 9.3609 5.3038 -0.0967 36 1 8.0967 6.9790 1.2683 37 1 8.2270 5.4037 2.0889 38 1 5.8285 6.4077 0.4884 39 1 5.9201 6.2600 2.2601 40 1 5.3721 -0.0131 -0.0011 41 1 4.1699 -2.1400 -0.0001 42 1 3.5691 -4.2679 -1.6980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165240869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = -59.752299 kcal Electronic energy + Delta-G solvation = -20862.569453 eV Core-core repulsion = 17805.504630 eV Total energy + Delta-G solvation = -3057.064823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.54442 -39.74051 -36.86048 -34.97763 -34.56086 -33.16974 -32.30622 -30.41421 -28.31434 -27.14928 -25.80878 -24.83888 -23.33140 -22.63288 -21.19503 -20.75074 -18.97955 -17.84593 -17.39488 -16.87495 -16.62667 -16.43267 -15.64327 -15.40666 -15.33685 -14.86697 -14.66601 -14.41396 -14.09107 -13.98978 -13.59516 -13.50790 -13.42287 -12.97491 -12.84277 -12.70780 -12.68938 -12.43001 -12.20320 -12.17103 -11.95486 -11.60142 -11.38926 -11.22061 -11.10240 -11.00707 -10.39056 -10.18894 -9.17400 -8.48427 -8.10463 -5.94715 1.12831 1.21510 1.41642 1.53592 1.61349 2.29944 2.76112 2.88248 2.91265 3.77029 3.85287 3.92323 3.94810 4.07061 4.17092 4.28208 4.46050 4.50290 4.51610 4.65648 4.69296 4.78764 4.79788 4.87820 4.93229 4.98859 5.06496 5.07347 5.12887 5.16961 5.19827 5.33485 5.35760 5.38845 5.54011 5.77263 5.94323 5.99079 6.26252 6.31241 6.47090 6.71431 6.91302 7.15017 7.18706 7.34976 8.54468 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033986 B = 0.003456 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.659237 B = 8100.813756 C = 8709.654775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.165 4.165 3 C -0.171 4.171 4 C 0.115 3.885 5 N -0.748 5.748 6 C 0.144 3.856 7 C 0.090 3.910 8 H 0.068 0.932 9 C -0.147 4.147 10 C -0.119 4.119 11 C -0.154 4.154 12 C 0.052 3.948 13 O -0.399 6.399 14 C -0.185 4.185 15 C -0.141 4.141 16 C 0.036 3.964 17 C -0.494 4.494 18 H 0.073 0.927 19 C 0.029 3.971 20 N -0.846 5.846 21 Si 0.973 3.027 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.261 1.261 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.113 0.887 29 H 0.395 0.605 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.522 15.911 1.695 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.167 4.167 3 C -0.193 4.193 4 C 0.015 3.985 5 N -0.383 5.383 6 C 0.019 3.981 7 C 0.032 3.968 8 H 0.086 0.914 9 C -0.186 4.186 10 C -0.156 4.156 11 C -0.191 4.191 12 C -0.024 4.024 13 O -0.319 6.319 14 C -0.207 4.207 15 C -0.161 4.161 16 C 0.033 3.967 17 C -0.525 4.525 18 H 0.091 0.909 19 C -0.182 4.182 20 N -0.475 5.475 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.185 1.185 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.230 0.770 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.770 15.619 1.699 17.993 hybrid contribution -0.113 -0.672 -0.129 0.693 sum 8.657 14.947 1.570 17.344 Atomic orbital electron populations 1.20403 0.91560 1.01138 1.00631 1.19777 0.96054 0.92576 1.08252 1.19966 0.91939 0.97066 1.10343 1.17490 0.90958 0.86047 1.03973 1.43812 1.04297 1.04326 1.85833 1.21161 0.81352 0.95264 1.00293 1.22241 0.95159 0.92119 0.87306 0.91435 1.22135 0.94116 0.98852 1.03458 1.21586 1.01755 0.94422 0.97882 1.22183 0.96035 1.02518 0.98398 1.22775 0.94829 0.82011 1.02803 1.87994 1.79228 1.25937 1.38698 1.20193 0.97861 0.91993 1.10626 1.20845 0.94917 0.96150 1.04159 1.17696 0.92118 0.92878 0.94038 1.19541 1.02385 0.93876 1.36742 0.90920 1.26597 0.94770 1.04390 0.92412 1.69931 1.20752 1.32223 1.24575 0.85348 0.78606 0.76902 0.79648 1.19016 1.19691 1.18544 0.92691 0.91958 0.93087 0.86884 0.77050 0.94083 0.91932 0.91493 0.89707 0.91054 0.90084 0.88973 0.91806 0.92436 0.88235 0.88192 0.88566 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.39 9.40 71.24 0.67 -2.72 16 2 C -0.16 -8.21 5.90 -19.66 -0.12 -8.32 16 3 C -0.17 -7.76 9.46 22.15 0.21 -7.55 16 4 C 0.11 5.14 6.67 38.67 0.26 5.40 16 5 N -0.75 -26.74 5.65 -339.00 -1.91 -28.65 16 6 C 0.14 4.39 4.56 86.38 0.39 4.79 16 7 C 0.09 2.09 2.68 30.62 0.08 2.17 16 8 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 9 C -0.15 -2.72 5.42 30.68 0.17 -2.55 16 10 C -0.12 -1.67 6.03 30.71 0.19 -1.48 16 11 C -0.15 -2.16 6.14 30.68 0.19 -1.97 16 12 C 0.05 0.91 6.84 72.01 0.49 1.40 16 13 O -0.40 -10.13 10.35 -148.98 -1.54 -11.67 16 14 C -0.18 -9.06 9.23 22.15 0.20 -8.86 16 15 C -0.14 -7.82 8.61 22.48 0.19 -7.62 16 16 C 0.04 2.00 5.56 -21.27 -0.12 1.88 16 17 C -0.49 -27.66 8.09 23.37 0.19 -27.47 16 18 H 0.07 3.91 6.89 -2.91 -0.02 3.89 16 19 C 0.03 1.57 5.16 85.22 0.44 2.00 16 20 N -0.85 -46.98 10.97 21.81 0.24 -46.74 16 21 Si 0.97 40.69 29.59 68.60 2.03 42.72 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 27 H 0.05 2.24 6.77 -2.39 -0.02 2.22 16 28 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 29 H 0.40 12.78 8.47 -92.71 -0.79 11.99 16 30 H 0.04 1.37 7.93 -2.38 -0.02 1.35 16 31 H 0.06 1.90 7.93 -2.39 -0.02 1.88 16 32 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 4.49 6.68 -2.91 -0.02 4.47 16 41 H 0.10 5.64 6.23 -2.91 -0.02 5.62 16 42 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 Total: -1.00 -64.07 334.37 2.47 -61.61 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.22 Total: 33.65 kcal Atomic # 6 Polarization: -54.36 SS G_CDS: 3.44 Total: -50.92 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -1.67 Total: -75.40 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.54 Total: -11.67 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -64.07 2.47 -61.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165240869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.854 kcal (2) G-P(sol) polarization free energy of solvation -64.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds