Wall clock time and date at job start Mon Mar 30 2020 02:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36357 * 120.08153 * 2 1 4 4 C 1.39549 * 120.16328 * 179.97438 * 3 2 1 5 5 N 1.38851 * 119.84079 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99904 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47277 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.48099 * 60.02203 * 7 6 5 9 9 C 1.53088 * 109.48111 * 180.02562 * 7 6 5 10 10 C 1.53174 * 109.16490 * 177.59174 * 9 7 6 11 11 C 1.53173 * 109.03698 * 303.01849 * 10 9 7 12 12 C 1.53090 * 109.16434 * 56.97822 * 11 10 9 13 13 O 1.42903 * 109.41721 * 302.39536 * 12 11 10 14 14 C 1.39588 * 120.31315 * 0.02562 * 4 3 2 15 15 C 1.36329 * 120.15928 * 359.73885 * 14 4 3 16 16 C 1.40867 * 120.08313 * 179.97438 * 2 1 3 17 17 C 1.41139 * 120.15395 * 359.97438 * 16 2 1 18 18 H 1.08003 * 120.00271 * 333.97601 * 17 16 2 19 19 C 1.39866 * 120.00139 * 153.97286 * 17 16 2 20 20 N 1.30909 * 119.99991 * 343.41001 * 19 17 16 21 21 Si 1.86796 * 120.00347 * 163.40253 * 19 17 16 22 22 H 1.48497 * 109.47478 * 265.62368 * 21 19 17 23 23 H 1.48507 * 109.46879 * 25.62250 * 21 19 17 24 24 H 1.48496 * 109.47200 * 145.62124 * 21 19 17 25 25 H 1.09001 * 109.46915 * 270.01714 * 1 2 3 26 26 H 1.08993 * 109.47188 * 30.01424 * 1 2 3 27 27 H 1.09000 * 109.47348 * 150.02005 * 1 2 3 28 28 H 1.08007 * 119.91507 * 359.96651 * 3 2 1 29 29 H 0.96995 * 120.00150 * 359.97438 * 5 4 3 30 30 H 1.09003 * 109.46933 * 299.99889 * 6 5 4 31 31 H 1.09003 * 109.47112 * 59.99649 * 6 5 4 32 32 H 1.09002 * 109.52712 * 297.49536 * 9 7 6 33 33 H 1.09000 * 109.52435 * 57.68117 * 9 7 6 34 34 H 1.08999 * 109.54659 * 183.15347 * 10 9 7 35 35 H 1.09005 * 109.54708 * 62.88854 * 10 9 7 36 36 H 1.08999 * 109.52578 * 297.07428 * 11 10 9 37 37 H 1.08998 * 109.57870 * 176.91426 * 11 10 9 38 38 H 1.09002 * 109.48545 * 182.41308 * 12 11 10 39 39 H 1.09007 * 109.49232 * 62.38026 * 12 11 10 40 40 H 1.07996 * 119.91681 * 179.97438 * 14 4 3 41 41 H 1.08003 * 120.07733 * 180.26931 * 15 14 4 42 42 H 0.96988 * 120.00282 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1819 0.0005 5 7 4.2752 2.3873 0.0000 6 6 5.7402 2.3934 0.0011 7 6 6.2441 3.8380 0.0009 8 1 5.8784 4.3508 0.8905 9 6 7.7750 3.8447 0.0014 10 6 8.2716 5.2924 -0.0596 11 6 7.6879 5.9688 -1.3038 12 6 6.1603 5.8801 -1.2540 13 8 5.7666 4.5092 -1.1669 14 6 4.2922 -0.0221 0.0005 15 6 3.6221 -1.2093 0.0054 16 6 2.2131 -1.2189 0.0005 17 6 1.5125 -2.4441 0.0016 18 1 0.5150 -2.4954 0.4124 19 6 2.1100 -3.5919 -0.5293 20 7 3.1570 -3.4844 -1.3078 21 14 1.4142 -5.2782 -0.1275 22 1 2.1424 -5.8505 1.0332 23 1 -0.0275 -5.1522 0.2058 24 1 1.5743 -6.1725 -1.3021 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5140 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6504 2.1152 -0.0005 29 1 3.7867 3.2253 -0.0011 30 1 6.1049 1.8819 0.8919 31 1 6.1063 1.8803 -0.8881 32 1 8.1411 3.3722 0.9130 33 1 8.1420 3.2968 -0.8665 34 1 9.3601 5.3025 -0.1160 35 1 7.9465 5.8274 0.8327 36 1 8.0530 5.4639 -2.1981 37 1 7.9913 7.0154 -1.3269 38 1 5.7408 6.3220 -2.1578 39 1 5.7929 6.4199 -0.3812 40 1 5.3722 -0.0131 0.0005 41 1 4.1698 -2.1401 0.0098 42 1 3.5715 -4.2803 -1.6757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165240872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:35 Heat of formation + Delta-G solvation = -59.809280 kcal Electronic energy + Delta-G solvation = -20878.435917 eV Core-core repulsion = 17821.368624 eV Total energy + Delta-G solvation = -3057.067294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54496 -39.73793 -36.85310 -34.97799 -34.56118 -33.16916 -32.30578 -30.41322 -28.31649 -27.15440 -25.81680 -24.82396 -23.32399 -22.63245 -21.18828 -20.75374 -18.97969 -17.84439 -17.39970 -16.87757 -16.62139 -16.42996 -15.64372 -15.40736 -15.32847 -14.88204 -14.65900 -14.41710 -14.08205 -13.99188 -13.59595 -13.50280 -13.42950 -13.00373 -12.80249 -12.73551 -12.67465 -12.43777 -12.22311 -12.12954 -11.95828 -11.60117 -11.37680 -11.21284 -11.09584 -11.01782 -10.38730 -10.19306 -9.17382 -8.48965 -8.10348 -5.94709 1.12489 1.21325 1.41587 1.54117 1.61121 2.29776 2.73699 2.89438 2.93347 3.77630 3.85148 3.92515 3.94765 4.06743 4.17470 4.28393 4.46195 4.50480 4.51463 4.65534 4.69687 4.78672 4.79386 4.88100 4.93408 4.98734 5.06577 5.07307 5.13012 5.17073 5.19982 5.33484 5.35858 5.39043 5.54056 5.77151 5.94314 5.99160 6.26242 6.31593 6.47143 6.71688 6.91638 7.14927 7.19240 7.35470 8.54307 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033375 B = 0.003476 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.752724 B = 8052.935126 C = 8627.194913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.165 4.165 3 C -0.171 4.171 4 C 0.115 3.885 5 N -0.747 5.747 6 C 0.144 3.856 7 C 0.089 3.911 8 H 0.070 0.930 9 C -0.148 4.148 10 C -0.118 4.118 11 C -0.154 4.154 12 C 0.052 3.948 13 O -0.400 6.400 14 C -0.184 4.184 15 C -0.141 4.141 16 C 0.036 3.964 17 C -0.493 4.493 18 H 0.073 0.927 19 C 0.029 3.971 20 N -0.846 5.846 21 Si 0.974 3.026 22 H -0.267 1.267 23 H -0.259 1.259 24 H -0.274 1.274 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.396 0.604 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.522 15.955 2.558 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.166 4.166 3 C -0.193 4.193 4 C 0.015 3.985 5 N -0.382 5.382 6 C 0.019 3.981 7 C 0.031 3.969 8 H 0.088 0.912 9 C -0.186 4.186 10 C -0.156 4.156 11 C -0.192 4.192 12 C -0.024 4.024 13 O -0.319 6.319 14 C -0.207 4.207 15 C -0.161 4.161 16 C 0.033 3.967 17 C -0.525 4.525 18 H 0.091 0.909 19 C -0.182 4.182 20 N -0.475 5.475 21 Si 0.796 3.204 22 H -0.192 1.192 23 H -0.183 1.183 24 H -0.199 1.199 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.131 0.869 29 H 0.230 0.770 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.752 15.669 2.273 18.091 hybrid contribution -0.078 -0.683 0.001 0.687 sum 8.674 14.986 2.274 17.464 Atomic orbital electron populations 1.20401 0.91568 1.01070 1.00687 1.19773 0.96042 0.92569 1.08262 1.19967 0.91949 0.97055 1.10336 1.17495 0.90962 0.86060 1.03956 1.43787 1.04303 1.04321 1.85775 1.21185 0.81404 0.95243 1.00270 1.22261 0.94399 0.91700 0.88497 0.91217 1.22139 0.94087 0.98836 1.03518 1.21584 1.01391 0.94285 0.98327 1.22183 0.95801 1.02399 0.98803 1.22772 0.95018 0.81941 1.02668 1.87996 1.75332 1.24974 1.43638 1.20194 0.97860 0.91985 1.10633 1.20840 0.94925 0.96132 1.04238 1.17694 0.92119 0.92881 0.94026 1.19565 1.02238 0.93648 1.37045 0.90863 1.26613 0.94775 1.04453 0.92361 1.69939 1.20865 1.32086 1.24634 0.85315 0.79616 0.76972 0.78479 1.19207 1.18254 1.19897 0.92540 0.92042 0.93172 0.86910 0.77016 0.91607 0.94469 0.89502 0.91732 0.90114 0.90892 0.91982 0.88959 0.88367 0.92298 0.88183 0.88602 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.40 9.39 71.24 0.67 -2.73 16 2 C -0.16 -8.21 5.90 -19.66 -0.12 -8.32 16 3 C -0.17 -7.77 9.46 22.15 0.21 -7.56 16 4 C 0.11 5.15 6.67 38.67 0.26 5.41 16 5 N -0.75 -26.78 5.59 -338.99 -1.90 -28.67 16 6 C 0.14 4.37 4.58 86.38 0.40 4.77 16 7 C 0.09 2.07 2.73 30.62 0.08 2.16 16 8 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 9 C -0.15 -2.71 5.42 30.68 0.17 -2.54 16 10 C -0.12 -1.65 6.03 30.71 0.19 -1.47 16 11 C -0.15 -2.21 6.14 30.68 0.19 -2.03 16 12 C 0.05 0.92 6.84 72.01 0.49 1.42 16 13 O -0.40 -10.29 10.15 -148.98 -1.51 -11.81 16 14 C -0.18 -9.06 9.23 22.15 0.20 -8.86 16 15 C -0.14 -7.85 8.62 22.48 0.19 -7.66 16 16 C 0.04 2.00 5.56 -21.27 -0.12 1.88 16 17 C -0.49 -27.63 8.10 23.38 0.19 -27.44 16 18 H 0.07 3.95 6.88 -2.91 -0.02 3.93 16 19 C 0.03 1.55 5.15 85.22 0.44 1.99 16 20 N -0.85 -47.30 10.99 21.82 0.24 -47.06 16 21 Si 0.97 40.78 29.59 68.60 2.03 42.81 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 27 H 0.05 2.21 6.78 -2.39 -0.02 2.20 16 28 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 29 H 0.40 12.89 8.35 -92.71 -0.77 12.11 16 30 H 0.07 1.93 7.93 -2.39 -0.02 1.92 16 31 H 0.04 1.27 7.92 -2.39 -0.02 1.25 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.10 4.49 6.68 -2.91 -0.02 4.47 16 41 H 0.10 5.62 6.24 -2.91 -0.02 5.60 16 42 H 0.28 14.29 8.30 -92.72 -0.77 13.52 16 Total: -1.00 -64.43 334.09 2.53 -61.90 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.23 Total: 33.82 kcal Atomic # 6 Polarization: -54.42 SS G_CDS: 3.44 Total: -50.98 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.66 Total: -75.73 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.51 Total: -11.81 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -64.43 2.53 -61.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165240872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.089 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds