Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36350 * 119.92133 * 2 1 4 4 C 1.40874 * 119.83502 * 179.97438 * 3 2 1 5 5 C 1.41145 * 120.15209 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99863 * 28.66708 * 5 4 3 7 7 C 1.39857 * 119.99765 * 208.66277 * 5 4 3 8 8 N 1.30911 * 120.00390 * 11.42631 * 7 5 4 9 9 Si 1.86797 * 119.99925 * 191.42248 * 7 5 4 10 10 H 1.48501 * 109.47044 * 60.00582 * 9 7 5 11 11 H 1.48506 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47592 * 300.00295 * 9 7 5 13 13 C 1.40900 * 119.69097 * 359.97438 * 4 3 2 14 14 C 1.36319 * 119.83246 * 359.74312 * 13 4 3 15 15 C 1.39542 * 119.91568 * 179.97438 * 2 1 3 16 16 N 1.38862 * 119.84709 * 359.97438 * 15 2 1 17 17 C 1.46498 * 120.00252 * 186.36091 * 16 15 2 18 18 C 1.53004 * 110.01662 * 61.66085 * 17 16 15 19 19 O 1.42900 * 109.47093 * 55.09911 * 18 17 16 20 20 C 1.54272 * 110.03143 * 183.05069 * 17 16 15 21 21 C 1.54959 * 104.16123 * 95.75325 * 20 17 16 22 22 C 1.54896 * 102.77705 * 37.88686 * 21 20 17 23 23 C 1.53870 * 110.03120 * 300.26345 * 17 16 15 24 24 H 1.09007 * 109.46754 * 270.02247 * 1 2 3 25 25 H 1.08999 * 109.47352 * 30.01777 * 1 2 3 26 26 H 1.08996 * 109.47488 * 150.02254 * 1 2 3 27 27 H 1.08001 * 120.08670 * 359.95882 * 3 2 1 28 28 H 0.96995 * 120.00122 * 179.97438 * 8 7 5 29 29 H 1.07998 * 120.08071 * 180.02562 * 13 4 3 30 30 H 1.08007 * 119.91679 * 180.24936 * 14 13 4 31 31 H 0.97005 * 119.99359 * 6.35574 * 16 15 2 32 32 H 1.09000 * 109.46662 * 295.09611 * 18 17 16 33 33 H 1.08994 * 109.46776 * 175.10086 * 18 17 16 34 34 H 0.96699 * 113.99558 * 180.02562 * 19 18 17 35 35 H 1.08998 * 110.48797 * 214.40432 * 20 17 16 36 36 H 1.09003 * 110.48665 * 337.04232 * 20 17 16 37 37 H 1.09007 * 110.72053 * 279.57765 * 21 20 17 38 38 H 1.08993 * 110.76717 * 156.22425 * 21 20 17 39 39 H 1.08999 * 110.48566 * 203.40626 * 22 21 20 40 40 H 1.08996 * 110.48066 * 80.76166 * 22 21 20 41 41 H 1.08998 * 110.03486 * 359.95963 * 23 17 16 42 42 H 1.09001 * 110.02804 * 121.38465 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1796 0.0005 5 6 4.3066 2.3990 0.0000 6 1 3.8694 3.2792 0.4479 7 6 5.5772 2.4675 -0.5805 8 7 6.0155 1.4766 -1.3152 9 14 6.6488 3.9731 -0.3077 10 1 6.9087 4.1389 1.1449 11 1 7.9375 3.8000 -1.0250 12 1 5.9519 5.1774 -0.8265 13 6 4.2919 -0.0454 0.0016 14 6 3.5988 -1.2192 0.0075 15 6 2.2029 -1.2095 0.0005 16 7 1.5036 -2.4092 0.0016 17 6 2.2241 -3.6769 0.1427 18 6 2.9517 -3.7189 1.4881 19 8 2.0165 -3.4844 2.5429 20 6 1.2387 -4.8593 0.0378 21 6 1.3216 -5.2912 -1.4481 22 6 2.8264 -5.1176 -1.7718 23 6 3.2329 -3.8407 -1.0075 24 1 -0.3633 0.0004 1.0278 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6472 2.1171 -0.0007 28 1 6.8966 1.5243 -1.7181 29 1 5.3718 -0.0544 0.0025 30 1 4.1309 -2.1591 0.0124 31 1 0.5380 -2.4077 -0.0910 32 1 3.7228 -2.9488 1.5082 33 1 3.4121 -4.6977 1.6217 34 1 2.4092 -3.4964 3.4264 35 1 1.5507 -5.6750 0.6900 36 1 0.2276 -4.5365 0.2862 37 1 0.7140 -4.6377 -2.0742 38 1 1.0187 -6.3315 -1.5657 39 1 2.9731 -4.9836 -2.8436 40 1 3.3953 -5.9749 -1.4121 41 1 3.1859 -2.9773 -1.6712 42 1 4.2409 -3.9501 -0.6073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167806160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = -32.974584 kcal Electronic energy + Delta-G solvation = -22028.709604 eV Core-core repulsion = 18972.805950 eV Total energy + Delta-G solvation = -3055.903654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.61997 -37.40198 -35.80556 -34.22094 -32.48813 -31.34860 -29.31376 -28.70025 -27.87195 -25.70787 -24.53003 -23.67781 -21.19772 -20.35915 -19.67958 -18.87304 -17.02343 -16.74448 -16.17189 -15.66850 -15.07557 -14.84393 -14.37107 -14.12261 -13.49923 -13.16297 -12.91764 -12.87182 -12.49513 -12.08378 -11.95675 -11.68478 -11.60933 -11.42858 -11.11710 -11.01551 -10.93388 -10.85090 -10.79351 -10.64777 -10.51696 -10.40747 -10.27775 -9.68430 -9.52294 -9.15410 -9.07063 -8.44748 -7.26210 -6.49726 -6.21837 -3.98611 2.98912 3.11860 3.17332 3.21040 3.40081 4.11259 4.25820 4.46829 4.76362 4.81370 4.89956 5.05458 5.42561 5.58850 5.60260 5.65718 5.71823 5.80362 5.85045 5.94662 5.98265 6.01960 6.09994 6.15396 6.19094 6.28430 6.37193 6.39929 6.43519 6.61908 6.64740 6.98669 7.03587 7.30833 7.47089 7.65407 7.79435 7.90325 7.94446 8.22562 8.39233 8.59156 8.79816 8.89775 9.14040 9.23264 10.48807 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.005076 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.327293 B = 5514.372548 C = 5904.001170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.139 4.139 3 C -0.178 4.178 4 C 0.072 3.928 5 C -0.468 4.468 6 H 0.069 0.931 7 C 0.073 3.927 8 N -0.819 5.819 9 Si 0.904 3.096 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.269 1.269 13 C -0.118 4.118 14 C -0.177 4.177 15 C 0.115 3.885 16 N -0.738 5.738 17 C 0.196 3.804 18 C 0.061 3.939 19 O -0.560 6.560 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.134 4.134 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.274 0.726 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.384 0.616 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.369 0.631 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -12.038 1.941 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C -0.198 4.198 4 C 0.069 3.931 5 C -0.500 4.500 6 H 0.087 0.913 7 C -0.141 4.141 8 N -0.448 5.448 9 Si 0.730 3.270 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.194 1.194 13 C -0.138 4.138 14 C -0.199 4.199 15 C 0.018 3.982 16 N -0.373 5.373 17 C 0.107 3.893 18 C -0.018 4.018 19 O -0.364 6.364 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.172 4.172 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.219 0.781 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.214 0.786 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.961 -12.150 1.302 13.188 hybrid contribution 0.777 0.715 0.470 1.155 sum -4.184 -11.436 1.772 12.305 Atomic orbital electron populations 1.20450 0.94143 1.00179 1.00074 1.18628 0.93392 0.92378 1.09857 1.20483 0.94344 0.94805 1.10175 1.17457 0.90540 0.93243 0.91882 1.19299 1.00111 0.96411 1.34171 0.91288 1.25736 0.97945 0.97135 0.93267 1.69814 1.18378 1.31599 1.24964 0.86453 0.79076 0.82260 0.79257 1.19265 1.20678 1.19398 1.20970 0.99649 0.91160 1.02063 1.20398 0.91761 0.97743 1.10002 1.17108 0.90858 0.84349 1.05902 1.44002 1.06983 1.01419 1.84899 1.20517 0.91946 0.85304 0.91524 1.22956 0.92166 0.98626 0.88072 1.86502 1.37507 1.95483 1.16902 1.22509 0.99424 0.96973 0.96396 1.22519 0.96811 1.00526 0.96349 1.22365 0.95875 0.97712 1.00147 1.22755 0.98282 0.98666 0.97535 0.93305 0.93109 0.93831 0.89216 0.91534 0.86455 0.88487 0.78106 0.92057 0.94518 0.78573 0.91053 0.91296 0.91449 0.91938 0.91756 0.92037 0.89434 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.61 36.00 0.35 -1.32 16 2 C -0.14 -3.12 5.86 -104.82 -0.61 -3.74 16 3 C -0.18 -4.47 9.37 -39.26 -0.37 -4.84 16 4 C 0.07 1.95 5.55 -106.79 -0.59 1.36 16 5 C -0.47 -12.92 9.04 -37.87 -0.34 -13.26 16 6 H 0.07 1.85 7.87 -52.48 -0.41 1.43 16 7 C 0.07 1.90 5.24 -17.34 -0.09 1.81 16 8 N -0.82 -22.06 10.86 55.54 0.60 -21.45 16 9 Si 0.90 19.67 29.57 -169.99 -5.03 14.64 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C -0.12 -3.10 8.60 -39.27 -0.34 -3.44 16 14 C -0.18 -4.07 6.93 -39.77 -0.28 -4.35 16 15 C 0.12 2.50 6.04 -83.69 -0.51 2.00 16 16 N -0.74 -13.13 4.89 -44.82 -0.22 -13.35 16 17 C 0.20 2.97 0.70 -130.70 -0.09 2.88 16 18 C 0.06 0.92 5.31 37.16 0.20 1.11 16 19 O -0.56 -8.50 13.26 -35.23 -0.47 -8.97 16 20 C -0.12 -1.45 5.85 -25.03 -0.15 -1.60 16 21 C -0.12 -1.41 6.91 -24.70 -0.17 -1.59 16 22 C -0.12 -1.48 6.83 -25.07 -0.17 -1.65 16 23 C -0.13 -2.00 4.38 -25.62 -0.11 -2.11 16 24 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 25 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 26 H 0.04 0.71 6.45 -51.93 -0.33 0.38 16 27 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 28 H 0.27 6.81 8.30 -40.82 -0.34 6.48 16 29 H 0.12 3.20 6.23 -52.49 -0.33 2.88 16 30 H 0.10 2.01 3.64 -52.48 -0.19 1.82 16 31 H 0.38 6.48 6.15 -40.82 -0.25 6.23 16 32 H 0.06 1.05 5.39 -51.93 -0.28 0.77 16 33 H 0.04 0.47 8.04 -51.93 -0.42 0.05 16 34 H 0.37 4.05 9.12 45.56 0.42 4.47 16 35 H 0.07 0.83 7.79 -51.93 -0.40 0.43 16 36 H 0.07 0.88 7.72 -51.93 -0.40 0.48 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.57 6.72 -51.93 -0.35 1.22 16 42 H 0.06 0.94 6.97 -51.93 -0.36 0.58 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -29.44 323.35 -8.92 -38.36 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -5.41 Total: 14.62 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -3.28 Total: -28.72 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.38 Total: -34.80 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.47 Total: -8.97 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.44 -8.92 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167806160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.384 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds