Wall clock time and date at job start Mon Mar 30 2020 02:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36350 * 119.92133 * 2 1 4 4 C 1.40874 * 119.83502 * 179.97438 * 3 2 1 5 5 C 1.41145 * 120.15209 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99863 * 28.66708 * 5 4 3 7 7 C 1.39857 * 119.99765 * 208.66277 * 5 4 3 8 8 N 1.30911 * 120.00390 * 11.42631 * 7 5 4 9 9 Si 1.86797 * 119.99925 * 191.42248 * 7 5 4 10 10 H 1.48501 * 109.47044 * 60.00582 * 9 7 5 11 11 H 1.48506 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47592 * 300.00295 * 9 7 5 13 13 C 1.40900 * 119.69097 * 359.97438 * 4 3 2 14 14 C 1.36319 * 119.83246 * 359.74312 * 13 4 3 15 15 C 1.39542 * 119.91568 * 179.97438 * 2 1 3 16 16 N 1.38862 * 119.84709 * 359.97438 * 15 2 1 17 17 C 1.46498 * 120.00252 * 186.36091 * 16 15 2 18 18 C 1.53004 * 110.01662 * 61.66085 * 17 16 15 19 19 O 1.42900 * 109.47093 * 55.09911 * 18 17 16 20 20 C 1.54272 * 110.03143 * 183.05069 * 17 16 15 21 21 C 1.54959 * 104.16123 * 95.75325 * 20 17 16 22 22 C 1.54896 * 102.77705 * 37.88686 * 21 20 17 23 23 C 1.53870 * 110.03120 * 300.26345 * 17 16 15 24 24 H 1.09007 * 109.46754 * 270.02247 * 1 2 3 25 25 H 1.08999 * 109.47352 * 30.01777 * 1 2 3 26 26 H 1.08996 * 109.47488 * 150.02254 * 1 2 3 27 27 H 1.08001 * 120.08670 * 359.95882 * 3 2 1 28 28 H 0.96995 * 120.00122 * 179.97438 * 8 7 5 29 29 H 1.07998 * 120.08071 * 180.02562 * 13 4 3 30 30 H 1.08007 * 119.91679 * 180.24936 * 14 13 4 31 31 H 0.97005 * 119.99359 * 6.35574 * 16 15 2 32 32 H 1.09000 * 109.46662 * 295.09611 * 18 17 16 33 33 H 1.08994 * 109.46776 * 175.10086 * 18 17 16 34 34 H 0.96699 * 113.99558 * 180.02562 * 19 18 17 35 35 H 1.08998 * 110.48797 * 214.40432 * 20 17 16 36 36 H 1.09003 * 110.48665 * 337.04232 * 20 17 16 37 37 H 1.09007 * 110.72053 * 279.57765 * 21 20 17 38 38 H 1.08993 * 110.76717 * 156.22425 * 21 20 17 39 39 H 1.08999 * 110.48566 * 203.40626 * 22 21 20 40 40 H 1.08996 * 110.48066 * 80.76166 * 22 21 20 41 41 H 1.08998 * 110.03486 * 359.95963 * 23 17 16 42 42 H 1.09001 * 110.02804 * 121.38465 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1796 0.0005 5 6 4.3066 2.3990 0.0000 6 1 3.8694 3.2792 0.4479 7 6 5.5772 2.4675 -0.5805 8 7 6.0155 1.4766 -1.3152 9 14 6.6488 3.9731 -0.3077 10 1 6.9087 4.1389 1.1449 11 1 7.9375 3.8000 -1.0250 12 1 5.9519 5.1774 -0.8265 13 6 4.2919 -0.0454 0.0016 14 6 3.5988 -1.2192 0.0075 15 6 2.2029 -1.2095 0.0005 16 7 1.5036 -2.4092 0.0016 17 6 2.2241 -3.6769 0.1427 18 6 2.9517 -3.7189 1.4881 19 8 2.0165 -3.4844 2.5429 20 6 1.2387 -4.8593 0.0378 21 6 1.3216 -5.2912 -1.4481 22 6 2.8264 -5.1176 -1.7718 23 6 3.2329 -3.8407 -1.0075 24 1 -0.3633 0.0004 1.0278 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6472 2.1171 -0.0007 28 1 6.8966 1.5243 -1.7181 29 1 5.3718 -0.0544 0.0025 30 1 4.1309 -2.1591 0.0124 31 1 0.5380 -2.4077 -0.0910 32 1 3.7228 -2.9488 1.5082 33 1 3.4121 -4.6977 1.6217 34 1 2.4092 -3.4964 3.4264 35 1 1.5507 -5.6750 0.6900 36 1 0.2276 -4.5365 0.2862 37 1 0.7140 -4.6377 -2.0742 38 1 1.0187 -6.3315 -1.5657 39 1 2.9731 -4.9836 -2.8436 40 1 3.3953 -5.9749 -1.4121 41 1 3.1859 -2.9773 -1.6712 42 1 4.2409 -3.9501 -0.6073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167806160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:21 Heat of formation + Delta-G solvation = -51.529088 kcal Electronic energy + Delta-G solvation = -22029.514187 eV Core-core repulsion = 18972.805950 eV Total energy + Delta-G solvation = -3056.708238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99634 -39.04022 -36.93904 -36.00121 -34.11597 -33.09428 -30.90415 -29.88465 -29.30231 -27.46857 -26.18321 -24.99043 -22.67753 -21.98793 -21.15136 -20.22267 -18.70195 -18.18897 -17.77124 -17.05472 -16.62807 -16.29483 -15.62711 -15.46557 -15.09877 -14.60973 -14.44939 -14.33862 -13.99149 -13.62332 -13.52147 -13.23074 -13.22454 -12.95840 -12.75776 -12.57402 -12.40104 -12.16827 -12.01679 -11.93963 -11.89877 -11.64534 -11.45046 -11.38461 -11.13729 -11.01173 -10.63985 -10.21517 -9.15065 -8.44873 -8.00265 -5.99467 1.15652 1.21440 1.38774 1.49910 1.60414 2.28687 2.87757 2.90057 3.34043 3.72549 3.77330 3.88257 4.06284 4.31473 4.39504 4.45512 4.52256 4.54482 4.56019 4.69616 4.72694 4.82695 4.89449 4.94335 4.94479 5.05158 5.07955 5.11494 5.20360 5.20874 5.27895 5.34487 5.37171 5.51308 5.58614 5.78650 5.93603 6.04867 6.24541 6.47359 6.74710 6.90488 6.97669 7.13067 7.21666 7.38851 8.55157 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.005076 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.327293 B = 5514.372548 C = 5904.001170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.152 4.152 3 C -0.192 4.192 4 C 0.031 3.969 5 C -0.507 4.507 6 H 0.062 0.938 7 C 0.029 3.971 8 N -0.851 5.851 9 Si 0.977 3.023 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.264 1.264 13 C -0.140 4.140 14 C -0.179 4.179 15 C 0.133 3.867 16 N -0.729 5.729 17 C 0.185 3.815 18 C 0.062 3.938 19 O -0.575 6.575 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.135 4.135 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.279 0.721 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.391 0.609 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.387 0.613 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 -14.147 2.173 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.156 4.156 3 C -0.212 4.212 4 C 0.029 3.971 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.481 5.481 9 Si 0.798 3.202 10 H -0.188 1.188 11 H -0.195 1.195 12 H -0.189 1.189 13 C -0.160 4.160 14 C -0.200 4.200 15 C 0.033 3.967 16 N -0.363 5.363 17 C 0.097 3.903 18 C -0.017 4.017 19 O -0.382 6.382 20 C -0.145 4.145 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.174 4.174 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.134 0.866 31 H 0.228 0.772 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.235 0.765 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.108 -14.300 1.548 15.627 hybrid contribution 1.012 1.207 0.429 1.632 sum -5.097 -13.094 1.977 14.189 Atomic orbital electron populations 1.20444 0.90768 1.01672 1.01305 1.19089 0.95991 0.91728 1.08798 1.20657 0.93872 0.96054 1.10627 1.17782 0.91812 0.93736 0.93803 1.19526 1.01803 0.96596 1.35992 0.91937 1.26550 0.98734 1.00362 0.92447 1.69901 1.18922 1.33538 1.25727 0.85347 0.77313 0.78224 0.79267 1.18814 1.19470 1.18878 1.20873 0.98834 0.92220 1.04110 1.20556 0.92657 0.97469 1.09364 1.17213 0.90593 0.85825 1.03093 1.44085 1.07373 1.01157 1.83689 1.20851 0.92740 0.84973 0.91728 1.22899 0.91457 0.99290 0.88041 1.86444 1.38046 1.95585 1.18078 1.22488 0.98475 0.95950 0.97635 1.22510 0.95974 1.01957 0.95175 1.22358 0.96751 0.96600 0.99835 1.22689 0.98488 0.99023 0.97200 0.92038 0.92336 0.91675 0.89206 0.91087 0.88578 0.86625 0.77249 0.94894 0.91465 0.76547 0.89337 0.91234 0.92232 0.89284 0.91656 0.89918 0.93038 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.94 9.61 71.24 0.68 -2.26 16 2 C -0.15 -6.84 5.86 -19.99 -0.12 -6.95 16 3 C -0.19 -9.99 9.37 22.47 0.21 -9.78 16 4 C 0.03 1.80 5.55 -21.27 -0.12 1.69 16 5 C -0.51 -29.49 9.04 23.38 0.21 -29.28 16 6 H 0.06 3.54 7.87 -2.91 -0.02 3.52 16 7 C 0.03 1.59 5.24 85.22 0.45 2.03 16 8 N -0.85 -47.88 10.86 21.81 0.24 -47.65 16 9 Si 0.98 41.53 29.57 68.60 2.03 43.56 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 13 C -0.14 -7.74 8.60 22.47 0.19 -7.55 16 14 C -0.18 -8.42 6.93 22.15 0.15 -8.27 16 15 C 0.13 5.74 6.04 38.67 0.23 5.97 16 16 N -0.73 -24.72 4.89 -295.73 -1.45 -26.16 16 17 C 0.18 5.20 0.70 4.33 0.00 5.20 16 18 C 0.06 1.74 5.31 71.98 0.38 2.12 16 19 O -0.58 -16.09 13.26 -148.98 -1.98 -18.06 16 20 C -0.11 -2.31 5.85 31.70 0.19 -2.12 16 21 C -0.12 -2.25 6.91 31.91 0.22 -2.03 16 22 C -0.12 -2.48 6.83 31.67 0.22 -2.27 16 23 C -0.14 -3.86 4.38 31.32 0.14 -3.72 16 24 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 26 H 0.06 1.95 6.45 -2.39 -0.02 1.94 16 27 H 0.09 4.51 8.06 -2.91 -0.02 4.48 16 28 H 0.28 14.37 8.30 -92.71 -0.77 13.60 16 29 H 0.10 5.61 6.23 -2.91 -0.02 5.59 16 30 H 0.12 4.90 3.64 -2.91 -0.01 4.89 16 31 H 0.39 12.19 6.15 -92.70 -0.57 11.62 16 32 H 0.03 1.11 5.39 -2.39 -0.01 1.09 16 33 H 0.07 1.48 8.04 -2.39 -0.02 1.46 16 34 H 0.39 7.66 9.12 -74.06 -0.68 6.98 16 35 H 0.09 1.65 7.79 -2.39 -0.02 1.63 16 36 H 0.07 1.52 7.72 -2.39 -0.02 1.50 16 37 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.05 1.85 6.72 -2.39 -0.02 1.83 16 42 H 0.06 1.81 6.97 -2.39 -0.02 1.79 16 Total: -1.00 -66.74 323.35 1.68 -65.06 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.20 Total: 40.47 kcal Atomic # 6 Polarization: -60.25 SS G_CDS: 3.04 Total: -57.21 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.21 Total: -73.81 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -1.98 Total: -18.06 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -66.74 1.68 -65.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167806160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.528 kcal (2) G-P(sol) polarization free energy of solvation -66.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds