Wall clock time and date at job start Mon Mar 30 2020 02:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36348 * 120.08023 * 2 1 4 4 C 1.39547 * 120.16060 * 179.97438 * 3 2 1 5 5 N 1.38858 * 119.84456 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00101 * 172.18151 * 5 4 3 7 7 C 1.52994 * 110.43381 * 301.39856 * 6 5 4 8 8 O 1.42895 * 109.47356 * 304.94714 * 7 6 5 9 9 C 1.54886 * 110.48386 * 178.85504 * 6 5 4 10 10 C 1.55237 * 102.58952 * 279.18665 * 9 6 5 11 11 C 1.54262 * 104.23084 * 322.08646 * 10 9 6 12 12 C 1.53872 * 106.60135 * 23.61169 * 11 10 9 13 13 C 1.39589 * 120.31352 * 359.95377 * 4 3 2 14 14 C 1.36319 * 120.16189 * 359.78258 * 13 4 3 15 15 C 1.40872 * 120.07761 * 179.97438 * 2 1 3 16 16 C 1.41133 * 120.15617 * 0.02562 * 15 2 1 17 17 H 1.07998 * 120.00334 * 334.47161 * 16 15 2 18 18 C 1.39865 * 119.99735 * 154.47937 * 16 15 2 19 19 N 1.30907 * 119.99888 * 334.62805 * 18 16 15 20 20 Si 1.86801 * 119.99971 * 154.62800 * 18 16 15 21 21 H 1.48503 * 109.46991 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.47248 * 299.99831 * 20 18 16 23 23 H 1.48501 * 109.47159 * 60.00119 * 20 18 16 24 24 H 1.09002 * 109.47493 * 270.02700 * 1 2 3 25 25 H 1.08998 * 109.46823 * 30.02458 * 1 2 3 26 26 H 1.09009 * 109.47038 * 150.02174 * 1 2 3 27 27 H 1.08000 * 119.92520 * 359.97438 * 3 2 1 28 28 H 0.96998 * 119.99682 * 352.17647 * 5 4 3 29 29 H 1.08997 * 109.47309 * 64.95225 * 7 6 5 30 30 H 1.09004 * 109.47046 * 184.94651 * 7 6 5 31 31 H 0.96697 * 114.00368 * 180.02562 * 8 7 6 32 32 H 1.09001 * 110.75935 * 37.58455 * 9 6 5 33 33 H 1.09006 * 110.75489 * 160.95006 * 9 6 5 34 34 H 1.09004 * 110.46837 * 203.39212 * 10 9 6 35 35 H 1.08997 * 110.57814 * 80.83341 * 10 9 6 36 36 H 1.09004 * 110.03421 * 264.32043 * 11 10 9 37 37 H 1.09003 * 110.03263 * 142.89603 * 11 10 9 38 38 H 1.08997 * 110.03047 * 240.71505 * 12 11 10 39 39 H 1.09000 * 110.03525 * 119.28114 * 12 11 10 40 40 H 1.08008 * 119.91995 * 180.02562 * 13 4 3 41 41 H 1.08002 * 120.08613 * 180.23123 * 14 13 4 42 42 H 0.96995 * 120.00134 * 354.11071 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1818 0.0005 5 7 4.2753 2.3872 0.0000 6 6 5.7300 2.3992 0.1731 7 6 6.1154 1.7419 1.4998 8 8 5.4219 2.3865 2.5701 9 6 6.2715 3.8489 0.1088 10 6 6.3422 4.1163 -1.4187 11 6 6.8091 2.7735 -2.0175 12 6 6.4199 1.6818 -1.0055 13 6 4.2922 -0.0222 0.0021 14 6 3.6220 -1.2093 0.0075 15 6 2.2131 -1.2190 0.0005 16 6 1.5124 -2.4441 0.0005 17 1 0.5115 -2.4939 0.4032 18 6 2.1143 -3.5940 -0.5208 19 7 3.0562 -3.4876 -1.4237 20 14 1.5742 -5.2813 0.0712 21 1 2.3601 -6.3274 -0.6312 22 1 1.8026 -5.3890 1.5346 23 1 0.1301 -5.4691 -0.2195 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6505 2.1152 -0.0004 28 1 3.7936 3.2212 -0.1151 29 1 5.8443 0.6865 1.4747 30 1 7.1903 1.8373 1.6538 31 1 5.6190 2.0208 3.4432 32 1 5.5823 4.5406 0.5932 33 1 7.2626 3.9113 0.5584 34 1 7.0654 4.9026 -1.6350 35 1 5.3597 4.3858 -1.8063 36 1 7.8899 2.7834 -2.1589 37 1 6.3093 2.5953 -2.9697 38 1 7.3117 1.1619 -0.6556 39 1 5.7311 0.9738 -1.4664 40 1 5.3722 -0.0133 0.0029 41 1 4.1697 -2.1402 0.0124 42 1 3.2776 -2.6187 -1.7937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167806630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:18 Heat of formation + Delta-G solvation = -40.154967 kcal Electronic energy + Delta-G solvation = -21993.502071 eV Core-core repulsion = 18937.287052 eV Total energy + Delta-G solvation = -3056.215019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.60295 -37.59491 -35.87343 -34.33054 -32.73212 -30.97250 -29.54439 -28.75459 -27.60380 -25.86140 -24.44511 -23.75635 -21.02544 -20.49206 -19.98243 -18.69468 -17.61895 -17.01213 -16.11070 -15.62761 -14.91205 -14.59334 -14.45322 -14.12119 -13.67060 -13.42173 -13.18624 -12.64376 -12.37845 -12.17795 -12.02706 -11.76640 -11.62906 -11.24432 -11.22606 -11.07046 -11.01227 -10.89084 -10.78706 -10.64701 -10.43221 -10.32492 -10.26818 -9.69629 -9.45447 -9.17479 -8.92286 -8.46995 -7.46279 -6.97453 -6.41814 -4.02522 2.90985 2.99883 3.25332 3.40417 3.45726 4.16943 4.19258 4.40842 4.69270 4.75268 4.86137 5.01855 5.38586 5.51846 5.57627 5.60432 5.66937 5.66999 5.83383 5.91808 5.97825 6.05196 6.13405 6.18654 6.22866 6.26014 6.31469 6.41765 6.56641 6.65723 6.68619 6.89492 6.97943 7.21176 7.47958 7.60507 7.68204 7.87149 7.99085 8.01044 8.32282 8.41031 8.57203 8.77670 9.02716 9.15491 10.29726 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.005050 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.928224 B = 5543.166320 C = 5814.992953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.161 4.161 3 C -0.146 4.146 4 C 0.100 3.900 5 N -0.736 5.736 6 C 0.197 3.803 7 C 0.061 3.939 8 O -0.560 6.560 9 C -0.117 4.117 10 C -0.123 4.123 11 C -0.118 4.118 12 C -0.143 4.143 13 C -0.160 4.160 14 C -0.180 4.180 15 C 0.068 3.932 16 C -0.531 4.531 17 H 0.071 0.929 18 C 0.039 3.961 19 N -0.816 5.816 20 Si 1.060 2.940 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.279 1.279 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.384 0.616 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.370 0.630 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 9.675 2.147 12.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.163 4.163 3 C -0.168 4.168 4 C 0.002 3.998 5 N -0.370 5.370 6 C 0.107 3.893 7 C -0.018 4.018 8 O -0.363 6.363 9 C -0.155 4.155 10 C -0.161 4.161 11 C -0.156 4.156 12 C -0.182 4.182 13 C -0.182 4.182 14 C -0.200 4.200 15 C 0.065 3.935 16 C -0.561 4.561 17 H 0.089 0.911 18 C -0.180 4.180 19 N -0.441 5.441 20 Si 0.885 3.115 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.205 1.205 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.217 0.783 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.215 0.785 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.162 8.316 1.472 11.074 hybrid contribution -0.152 1.592 0.595 1.707 sum 7.011 9.909 2.067 12.313 Atomic orbital electron populations 1.20403 0.93650 1.00408 0.99628 1.19257 0.94183 0.92626 1.10195 1.19718 0.91736 0.96392 1.08944 1.17164 0.90372 0.85191 1.07036 1.43668 1.03235 1.05377 1.84694 1.20647 0.82996 0.94348 0.91262 1.22877 0.93640 0.97573 0.87728 1.86500 1.70975 1.61680 1.17177 1.22695 1.00944 0.95732 0.96093 1.22408 1.01134 0.97131 0.95377 1.22050 1.00135 0.94566 0.98810 1.22780 1.00405 0.98761 0.96245 1.20255 0.97383 0.91859 1.08688 1.20753 0.94544 0.96055 1.08615 1.17406 0.91388 0.92190 0.92560 1.20272 1.03182 0.93962 1.38638 0.91126 1.26784 0.93273 1.04917 0.93065 1.70476 1.24680 1.31070 1.17867 0.83719 0.76637 0.74189 0.76978 1.20207 1.20352 1.20458 0.94037 0.94533 0.92010 0.89587 0.78327 0.92010 0.94438 0.78505 0.91043 0.90931 0.92081 0.91641 0.92295 0.91939 0.91878 0.89243 0.88413 0.87870 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.82 9.39 36.01 0.34 -1.48 16 2 C -0.16 -3.95 5.90 -104.30 -0.62 -4.56 16 3 C -0.15 -3.31 9.47 -39.77 -0.38 -3.69 16 4 C 0.10 2.14 6.15 -83.69 -0.51 1.63 16 5 N -0.74 -13.01 5.03 -44.33 -0.22 -13.23 16 6 C 0.20 2.96 0.53 -130.16 -0.07 2.89 16 7 C 0.06 0.92 5.48 37.15 0.20 1.12 16 8 O -0.56 -8.61 13.31 -35.23 -0.47 -9.08 16 9 C -0.12 -1.46 5.74 -24.55 -0.14 -1.60 16 10 C -0.12 -1.41 6.80 -24.89 -0.17 -1.58 16 11 C -0.12 -1.46 6.80 -25.62 -0.17 -1.64 16 12 C -0.14 -2.10 4.73 -25.61 -0.12 -2.22 16 13 C -0.16 -3.62 6.69 -39.77 -0.27 -3.88 16 14 C -0.18 -4.61 7.89 -39.26 -0.31 -4.92 16 15 C 0.07 1.81 5.29 -106.79 -0.57 1.25 16 16 C -0.53 -14.35 8.05 -37.88 -0.30 -14.65 16 17 H 0.07 1.87 6.91 -52.49 -0.36 1.51 16 18 C 0.04 1.02 4.93 -17.34 -0.09 0.93 16 19 N -0.82 -22.29 12.32 55.54 0.68 -21.60 16 20 Si 1.06 22.41 30.00 -169.99 -5.10 17.31 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.06 1.37 6.76 -51.92 -0.35 1.02 16 27 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.38 6.41 8.49 -40.82 -0.35 6.07 16 29 H 0.06 1.06 5.23 -51.93 -0.27 0.79 16 30 H 0.04 0.47 8.08 -51.93 -0.42 0.06 16 31 H 0.37 4.15 9.12 45.56 0.42 4.56 16 32 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.07 0.82 8.01 -51.93 -0.42 0.41 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 39 H 0.09 1.58 5.76 -51.93 -0.30 1.28 16 40 H 0.10 2.00 3.96 -52.48 -0.21 1.79 16 41 H 0.10 2.76 6.51 -52.49 -0.34 2.42 16 42 H 0.30 8.29 6.70 -40.82 -0.27 8.02 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -29.17 324.15 -8.85 -38.02 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -5.45 Total: 16.10 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: -3.17 Total: -32.40 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.46 Total: -34.83 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.47 Total: -9.08 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.10 Total: 17.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.17 -8.85 -38.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167806630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.134 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds