Wall clock time and date at job start Mon Mar 30 2020 02:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36348 * 120.08023 * 2 1 4 4 C 1.39547 * 120.16060 * 179.97438 * 3 2 1 5 5 N 1.38858 * 119.84456 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00101 * 172.18151 * 5 4 3 7 7 C 1.52994 * 110.43381 * 301.39856 * 6 5 4 8 8 O 1.42895 * 109.47356 * 304.94714 * 7 6 5 9 9 C 1.54886 * 110.48386 * 178.85504 * 6 5 4 10 10 C 1.55237 * 102.58952 * 279.18665 * 9 6 5 11 11 C 1.54262 * 104.23084 * 322.08646 * 10 9 6 12 12 C 1.53872 * 106.60135 * 23.61169 * 11 10 9 13 13 C 1.39589 * 120.31352 * 359.95377 * 4 3 2 14 14 C 1.36319 * 120.16189 * 359.78258 * 13 4 3 15 15 C 1.40872 * 120.07761 * 179.97438 * 2 1 3 16 16 C 1.41133 * 120.15617 * 0.02562 * 15 2 1 17 17 H 1.07998 * 120.00334 * 334.47161 * 16 15 2 18 18 C 1.39865 * 119.99735 * 154.47937 * 16 15 2 19 19 N 1.30907 * 119.99888 * 334.62805 * 18 16 15 20 20 Si 1.86801 * 119.99971 * 154.62800 * 18 16 15 21 21 H 1.48503 * 109.46991 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.47248 * 299.99831 * 20 18 16 23 23 H 1.48501 * 109.47159 * 60.00119 * 20 18 16 24 24 H 1.09002 * 109.47493 * 270.02700 * 1 2 3 25 25 H 1.08998 * 109.46823 * 30.02458 * 1 2 3 26 26 H 1.09009 * 109.47038 * 150.02174 * 1 2 3 27 27 H 1.08000 * 119.92520 * 359.97438 * 3 2 1 28 28 H 0.96998 * 119.99682 * 352.17647 * 5 4 3 29 29 H 1.08997 * 109.47309 * 64.95225 * 7 6 5 30 30 H 1.09004 * 109.47046 * 184.94651 * 7 6 5 31 31 H 0.96697 * 114.00368 * 180.02562 * 8 7 6 32 32 H 1.09001 * 110.75935 * 37.58455 * 9 6 5 33 33 H 1.09006 * 110.75489 * 160.95006 * 9 6 5 34 34 H 1.09004 * 110.46837 * 203.39212 * 10 9 6 35 35 H 1.08997 * 110.57814 * 80.83341 * 10 9 6 36 36 H 1.09004 * 110.03421 * 264.32043 * 11 10 9 37 37 H 1.09003 * 110.03263 * 142.89603 * 11 10 9 38 38 H 1.08997 * 110.03047 * 240.71505 * 12 11 10 39 39 H 1.09000 * 110.03525 * 119.28114 * 12 11 10 40 40 H 1.08008 * 119.91995 * 180.02562 * 13 4 3 41 41 H 1.08002 * 120.08613 * 180.23123 * 14 13 4 42 42 H 0.96995 * 120.00134 * 354.11071 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1818 0.0005 5 7 4.2753 2.3872 0.0000 6 6 5.7300 2.3992 0.1731 7 6 6.1154 1.7419 1.4998 8 8 5.4219 2.3865 2.5701 9 6 6.2715 3.8489 0.1088 10 6 6.3422 4.1163 -1.4187 11 6 6.8091 2.7735 -2.0175 12 6 6.4199 1.6818 -1.0055 13 6 4.2922 -0.0222 0.0021 14 6 3.6220 -1.2093 0.0075 15 6 2.2131 -1.2190 0.0005 16 6 1.5124 -2.4441 0.0005 17 1 0.5115 -2.4939 0.4032 18 6 2.1143 -3.5940 -0.5208 19 7 3.0562 -3.4876 -1.4237 20 14 1.5742 -5.2813 0.0712 21 1 2.3601 -6.3274 -0.6312 22 1 1.8026 -5.3890 1.5346 23 1 0.1301 -5.4691 -0.2195 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6505 2.1152 -0.0004 28 1 3.7936 3.2212 -0.1151 29 1 5.8443 0.6865 1.4747 30 1 7.1903 1.8373 1.6538 31 1 5.6190 2.0208 3.4432 32 1 5.5823 4.5406 0.5932 33 1 7.2626 3.9113 0.5584 34 1 7.0654 4.9026 -1.6350 35 1 5.3597 4.3858 -1.8063 36 1 7.8899 2.7834 -2.1589 37 1 6.3093 2.5953 -2.9697 38 1 7.3117 1.1619 -0.6556 39 1 5.7311 0.9738 -1.4664 40 1 5.3722 -0.0133 0.0029 41 1 4.1697 -2.1402 0.0124 42 1 3.2776 -2.6187 -1.7937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167806630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:18 Heat of formation + Delta-G solvation = -58.540639 kcal Electronic energy + Delta-G solvation = -21994.299333 eV Core-core repulsion = 18937.287052 eV Total energy + Delta-G solvation = -3057.012281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98646 -39.26663 -37.02117 -36.05578 -34.43804 -32.74017 -30.94907 -29.95267 -29.19349 -27.61669 -26.08241 -25.10497 -22.78335 -21.98512 -21.26220 -20.11876 -19.51624 -18.17975 -17.64709 -16.92046 -16.40081 -16.07738 -15.86198 -15.60695 -15.28953 -14.89299 -14.58265 -14.28291 -14.07711 -13.73784 -13.48851 -13.25744 -13.18843 -13.01611 -12.73945 -12.58197 -12.30825 -12.16381 -12.04449 -11.97481 -11.95491 -11.61011 -11.39677 -11.29108 -11.20281 -10.79544 -10.65258 -10.26694 -9.35452 -8.97469 -8.18897 -6.01286 1.01180 1.14959 1.52243 1.69641 1.80625 2.41735 2.81086 2.83422 3.27277 3.64575 3.69738 3.78713 4.03205 4.28655 4.32879 4.36817 4.49319 4.49637 4.55297 4.64973 4.66629 4.77146 4.83774 4.86013 4.94113 4.96165 5.05584 5.07101 5.11872 5.18875 5.26780 5.29461 5.34226 5.49304 5.63459 5.68356 5.83643 5.97429 6.06279 6.42485 6.46871 6.80330 6.88756 7.06532 7.17609 7.31085 8.25426 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.005050 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.928224 B = 5543.166320 C = 5814.992953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.170 4.170 3 C -0.163 4.163 4 C 0.125 3.875 5 N -0.727 5.727 6 C 0.184 3.816 7 C 0.061 3.939 8 O -0.576 6.576 9 C -0.107 4.107 10 C -0.118 4.118 11 C -0.116 4.116 12 C -0.144 4.144 13 C -0.165 4.165 14 C -0.193 4.193 15 C 0.028 3.972 16 C -0.562 4.562 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.842 5.842 20 Si 1.111 2.889 21 H -0.275 1.275 22 H -0.268 1.268 23 H -0.261 1.261 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.391 0.609 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.387 0.613 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 11.813 2.765 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.172 4.172 3 C -0.185 4.185 4 C 0.025 3.975 5 N -0.360 5.360 6 C 0.096 3.904 7 C -0.018 4.018 8 O -0.382 6.382 9 C -0.145 4.145 10 C -0.155 4.155 11 C -0.153 4.153 12 C -0.183 4.183 13 C -0.187 4.187 14 C -0.214 4.214 15 C 0.025 3.975 16 C -0.592 4.592 17 H 0.083 0.917 18 C -0.213 4.213 19 N -0.467 5.467 20 Si 0.930 3.070 21 H -0.200 1.200 22 H -0.193 1.193 23 H -0.185 1.185 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.129 0.871 28 H 0.226 0.774 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.235 0.765 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.144 10.505 2.104 13.458 hybrid contribution -0.355 1.180 0.443 1.310 sum 7.789 11.686 2.547 14.273 Atomic orbital electron populations 1.20380 0.91816 1.00930 1.00473 1.19695 0.95908 0.92569 1.09002 1.20023 0.92426 0.96825 1.09250 1.17300 0.90425 0.86306 1.03480 1.43778 1.04660 1.04200 1.83376 1.20984 0.81189 0.96714 0.91480 1.22848 0.95414 0.95795 0.87737 1.86444 1.71477 1.61963 1.18325 1.22670 1.01684 0.93228 0.96929 1.22397 1.01536 0.97174 0.94414 1.22052 1.01489 0.94180 0.97607 1.22742 1.00064 0.98960 0.96562 1.20396 0.98412 0.91360 1.08569 1.20706 0.94562 0.96302 1.09785 1.17735 0.92075 0.93231 0.94474 1.20410 1.03431 0.95107 1.40258 0.91661 1.28143 0.92644 1.08373 0.92171 1.70596 1.26748 1.29741 1.19659 0.83077 0.77164 0.69892 0.76878 1.20028 1.19320 1.18544 0.92910 0.91974 0.93428 0.87142 0.77440 0.94819 0.91307 0.76522 0.91119 0.88946 0.89512 0.92365 0.90090 0.92874 0.90554 0.92879 0.86570 0.90122 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.40 9.39 71.24 0.67 -2.73 16 2 C -0.17 -8.44 5.90 -19.66 -0.12 -8.55 16 3 C -0.16 -7.29 9.47 22.14 0.21 -7.08 16 4 C 0.12 5.30 6.15 38.67 0.24 5.54 16 5 N -0.73 -24.42 5.03 -294.17 -1.48 -25.89 16 6 C 0.18 5.12 0.53 4.68 0.00 5.12 16 7 C 0.06 1.71 5.48 71.98 0.39 2.10 16 8 O -0.58 -16.34 13.31 -148.98 -1.98 -18.32 16 9 C -0.11 -2.27 5.74 32.01 0.18 -2.09 16 10 C -0.12 -2.28 6.80 31.79 0.22 -2.06 16 11 C -0.12 -2.55 6.80 31.32 0.21 -2.34 16 12 C -0.14 -3.99 4.73 31.32 0.15 -3.84 16 13 C -0.17 -7.63 6.69 22.15 0.15 -7.48 16 14 C -0.19 -10.40 7.89 22.47 0.18 -10.23 16 15 C 0.03 1.55 5.29 -21.27 -0.11 1.44 16 16 C -0.56 -31.67 8.05 23.37 0.19 -31.49 16 17 H 0.07 3.60 6.91 -2.91 -0.02 3.58 16 18 C 0.00 -0.03 4.93 85.22 0.42 0.39 16 19 N -0.84 -48.31 12.32 21.82 0.27 -48.04 16 20 Si 1.11 46.28 30.00 68.60 2.06 48.34 16 21 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 26 H 0.05 2.15 6.76 -2.38 -0.02 2.13 16 27 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 28 H 0.39 12.12 8.49 -92.71 -0.79 11.33 16 29 H 0.03 1.13 5.23 -2.39 -0.01 1.12 16 30 H 0.07 1.50 8.08 -2.38 -0.02 1.49 16 31 H 0.39 7.85 9.12 -74.06 -0.68 7.17 16 32 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 33 H 0.09 1.65 8.01 -2.38 -0.02 1.63 16 34 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.88 7.84 -2.39 -0.02 1.86 16 39 H 0.05 1.87 5.76 -2.39 -0.01 1.85 16 40 H 0.12 4.84 3.96 -2.91 -0.01 4.82 16 41 H 0.08 4.61 6.51 -2.91 -0.02 4.59 16 42 H 0.28 16.60 6.70 -92.71 -0.62 15.98 16 Total: -1.00 -65.66 324.15 1.57 -64.09 By element: Atomic # 1 Polarization: 43.41 SS G_CDS: -0.27 Total: 43.13 kcal Atomic # 6 Polarization: -66.28 SS G_CDS: 2.98 Total: -63.30 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.21 Total: -73.93 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -1.98 Total: -18.32 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.06 Total: 48.34 kcal Total: -65.66 1.57 -64.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167806630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.548 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds