Wall clock time and date at job start Mon Mar 30 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36357 * 120.08153 * 2 1 4 4 C 1.39549 * 120.16328 * 179.97438 * 3 2 1 5 5 N 1.38851 * 119.84079 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99904 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47277 * 180.02562 * 6 5 4 8 8 H 1.09001 * 112.84680 * 43.80447 * 7 6 5 9 9 C 1.53778 * 113.61509 * 175.00195 * 7 6 5 10 10 C 1.53779 * 87.08439 * 139.98098 * 9 7 6 11 11 C 1.53001 * 113.61409 * 89.11267 * 10 9 7 12 12 O 1.42900 * 113.61355 * 220.01953 * 10 9 7 13 13 C 1.53784 * 113.61419 * 272.49806 * 7 6 5 14 14 C 1.39588 * 120.31315 * 0.02562 * 4 3 2 15 15 C 1.36329 * 120.15928 * 359.73885 * 14 4 3 16 16 C 1.40867 * 120.08313 * 179.97438 * 2 1 3 17 17 C 1.41139 * 120.15395 * 359.97438 * 16 2 1 18 18 H 1.08003 * 120.00271 * 333.97601 * 17 16 2 19 19 C 1.39866 * 120.00139 * 153.97286 * 17 16 2 20 20 N 1.30909 * 119.99991 * 343.41001 * 19 17 16 21 21 Si 1.86796 * 120.00347 * 163.40253 * 19 17 16 22 22 H 1.48497 * 109.47478 * 265.62368 * 21 19 17 23 23 H 1.48507 * 109.46879 * 25.62250 * 21 19 17 24 24 H 1.48496 * 109.47200 * 145.62124 * 21 19 17 25 25 H 1.09001 * 109.46915 * 270.01714 * 1 2 3 26 26 H 1.08993 * 109.47188 * 30.01424 * 1 2 3 27 27 H 1.09000 * 109.47348 * 150.02005 * 1 2 3 28 28 H 1.08007 * 119.91507 * 359.96651 * 3 2 1 29 29 H 0.96995 * 120.00150 * 359.97438 * 5 4 3 30 30 H 1.09003 * 109.46933 * 299.99889 * 6 5 4 31 31 H 1.09003 * 109.47112 * 59.99649 * 6 5 4 32 32 H 1.09006 * 113.61057 * 254.52988 * 9 7 6 33 33 H 1.09002 * 113.61996 * 25.42874 * 9 7 6 34 34 H 1.09001 * 109.47018 * 60.00261 * 11 10 9 35 35 H 1.09002 * 109.47125 * 180.02562 * 11 10 9 36 36 H 1.08997 * 109.47381 * 300.00483 * 11 10 9 37 37 H 0.96702 * 113.99432 * 179.97438 * 12 10 9 38 38 H 1.09000 * 113.61326 * 334.56389 * 13 7 6 39 39 H 1.08993 * 113.61627 * 105.46985 * 13 7 6 40 40 H 1.07996 * 119.91681 * 179.97438 * 14 4 3 41 41 H 1.08003 * 120.07733 * 180.26931 * 15 14 4 42 42 H 0.96988 * 120.00282 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1819 0.0005 5 7 4.2752 2.3873 0.0000 6 6 5.7402 2.3934 0.0011 7 6 6.2441 3.8380 0.0009 8 1 5.6985 4.4767 0.6955 9 6 7.7723 3.9574 0.1248 10 6 7.6884 5.0946 -0.9069 11 6 7.4767 6.4749 -0.2817 12 8 8.7462 5.0753 -1.8675 13 6 6.3902 4.4393 -1.4070 14 6 4.2922 -0.0221 0.0005 15 6 3.6221 -1.2093 0.0054 16 6 2.2131 -1.2189 0.0005 17 6 1.5125 -2.4441 0.0016 18 1 0.5150 -2.4954 0.4124 19 6 2.1100 -3.5919 -0.5293 20 7 3.1570 -3.4844 -1.3078 21 14 1.4142 -5.2782 -0.1275 22 1 2.1424 -5.8505 1.0332 23 1 -0.0275 -5.1522 0.2058 24 1 1.5743 -6.1725 -1.3021 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5140 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6504 2.1152 -0.0005 29 1 3.7867 3.2253 -0.0011 30 1 6.1049 1.8819 0.8919 31 1 6.1063 1.8803 -0.8881 32 1 8.1062 4.2848 1.1094 33 1 8.3095 3.0799 -0.2353 34 1 8.3075 6.7024 0.3863 35 1 7.4270 7.2268 -1.0693 36 1 6.5446 6.4789 0.2833 37 1 8.6986 5.7880 -2.5193 38 1 6.5495 3.6936 -2.1859 39 1 5.6084 5.1557 -1.6591 40 1 5.3722 -0.0131 0.0005 41 1 4.1698 -2.1401 0.0098 42 1 3.5715 -4.2803 -1.6757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168343537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:19 Heat of formation + Delta-G solvation = -20.659881 kcal Electronic energy + Delta-G solvation = -20666.266560 eV Core-core repulsion = 17610.896912 eV Total energy + Delta-G solvation = -3055.369648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.06158 -38.02410 -35.83233 -34.50314 -32.94636 -30.96821 -29.91071 -28.55995 -26.58743 -25.92456 -25.40050 -23.78396 -21.90359 -20.82913 -19.08314 -18.98222 -17.06857 -17.01417 -15.86552 -15.55298 -15.16417 -14.91151 -14.49780 -14.31523 -13.72795 -13.37075 -13.00528 -12.83093 -12.63226 -12.45817 -12.32138 -12.11927 -11.73699 -11.65271 -11.33126 -11.29184 -11.11520 -11.01142 -11.00887 -10.83851 -10.54824 -10.45119 -10.23678 -9.83908 -9.50678 -9.21098 -9.14760 -8.41286 -7.29030 -6.59069 -6.31693 -3.99076 2.93708 3.10460 3.17518 3.20855 3.39282 3.92598 4.08324 4.26595 4.37566 4.45004 4.58049 4.78606 4.80888 5.16609 5.22750 5.39489 5.43565 5.64829 5.67107 5.70873 5.78613 5.82616 5.98784 6.06586 6.18509 6.28628 6.32677 6.39648 6.48538 6.74109 6.77930 6.96910 7.06596 7.27099 7.40823 7.47866 7.65989 7.79409 7.87109 8.19526 8.36017 8.53871 8.75395 8.84383 9.10649 9.20351 10.42292 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032017 B = 0.003332 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.331318 B = 8402.091276 C = 9001.813780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.159 4.159 4 C 0.097 3.903 5 N -0.761 5.761 6 C 0.152 3.848 7 C -0.117 4.117 8 H 0.094 0.906 9 C -0.113 4.113 10 C 0.096 3.904 11 C -0.160 4.160 12 O -0.554 6.554 13 C -0.154 4.154 14 C -0.169 4.169 15 C -0.120 4.120 16 C 0.077 3.923 17 C -0.463 4.463 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.809 5.809 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.264 1.264 24 H -0.281 1.281 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.383 0.617 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.373 0.627 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.868 14.569 0.970 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.000 4.000 5 N -0.396 5.396 6 C 0.026 3.974 7 C -0.135 4.135 8 H 0.112 0.888 9 C -0.151 4.151 10 C 0.056 3.944 11 C -0.217 4.217 12 O -0.360 6.360 13 C -0.192 4.192 14 C -0.190 4.190 15 C -0.140 4.140 16 C 0.074 3.926 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.141 4.141 20 N -0.437 5.437 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.188 1.188 24 H -0.206 1.206 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.215 0.785 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.220 0.780 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.375 13.798 1.172 15.689 hybrid contribution -0.542 0.001 -0.272 0.607 sum 6.832 13.800 0.901 15.425 Atomic orbital electron populations 1.20412 0.93723 1.00469 0.99569 1.19300 0.94125 0.92756 1.09812 1.19648 0.91514 0.96390 1.10565 1.17340 0.90618 0.85159 1.06878 1.43833 1.03297 1.05149 1.87343 1.20939 0.82458 0.93723 1.00275 1.22544 0.95903 0.97545 0.97554 0.88826 1.23074 0.95800 0.98227 0.98033 1.22704 0.87118 0.94529 0.90077 1.22147 1.02887 0.95285 1.01412 1.86579 1.50230 1.55072 1.44069 1.23750 0.97272 1.00541 0.97606 1.20083 0.97097 0.92041 1.09823 1.20907 0.94644 0.96024 1.02456 1.17346 0.91600 0.91622 0.92024 1.19368 1.01870 0.92561 1.35658 0.90736 1.25797 0.94463 1.00862 0.92974 1.69855 1.19352 1.30962 1.23494 0.86416 0.80283 0.81954 0.78655 1.19684 1.18844 1.20622 0.94060 0.94561 0.91935 0.89686 0.78521 0.93440 0.93308 0.90817 0.88907 0.91631 0.92061 0.91027 0.77976 0.89035 0.91430 0.89510 0.86521 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 9.39 36.01 0.34 -1.47 16 2 C -0.16 -3.88 5.90 -104.30 -0.62 -4.50 16 3 C -0.16 -3.61 9.46 -39.77 -0.38 -3.99 16 4 C 0.10 2.15 6.67 -83.69 -0.56 1.59 16 5 N -0.76 -13.34 5.70 -58.50 -0.33 -13.67 16 6 C 0.15 2.28 4.73 -4.04 -0.02 2.27 16 7 C -0.12 -1.33 3.40 -89.81 -0.31 -1.63 16 8 H 0.09 0.98 7.66 -51.93 -0.40 0.59 16 9 C -0.11 -1.21 7.06 -25.92 -0.18 -1.39 16 10 C 0.10 0.94 1.94 -89.81 -0.17 0.77 16 11 C -0.16 -1.20 9.32 37.16 0.35 -0.86 16 12 O -0.55 -5.78 13.50 -35.23 -0.48 -6.26 16 13 C -0.15 -1.67 7.02 -25.92 -0.18 -1.85 16 14 C -0.17 -4.03 9.23 -39.77 -0.37 -4.40 16 15 C -0.12 -3.20 8.62 -39.26 -0.34 -3.54 16 16 C 0.08 2.08 5.56 -106.80 -0.59 1.49 16 17 C -0.46 -12.50 8.10 -37.87 -0.31 -12.81 16 18 H 0.07 1.94 6.88 -52.48 -0.36 1.58 16 19 C 0.07 1.92 5.15 -17.34 -0.09 1.83 16 20 N -0.81 -21.69 10.99 55.54 0.61 -21.08 16 21 Si 0.90 19.40 29.59 -169.99 -5.03 14.37 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.06 1.37 6.78 -51.93 -0.35 1.01 16 28 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.38 5.95 8.47 -40.82 -0.35 5.61 16 30 H 0.05 0.75 7.93 -51.93 -0.41 0.34 16 31 H 0.05 0.80 7.63 -51.93 -0.40 0.41 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.52 7.34 -51.93 -0.38 0.14 16 37 H 0.37 2.37 9.04 45.56 0.41 2.78 16 38 H 0.09 1.14 7.90 -51.93 -0.41 0.73 16 39 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.09 1.92 6.68 -52.49 -0.35 1.56 16 41 H 0.12 3.22 6.24 -52.48 -0.33 2.89 16 42 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -29.56 338.35 -9.38 -38.94 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.83 Total: 11.09 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -3.42 Total: -28.50 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.28 Total: -34.75 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.48 Total: -6.26 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.56 -9.38 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168343537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.284 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds