Wall clock time and date at job start Mon Mar 30 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36357 * 120.08153 * 2 1 4 4 C 1.39549 * 120.16328 * 179.97438 * 3 2 1 5 5 N 1.38851 * 119.84079 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99904 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47277 * 180.02562 * 6 5 4 8 8 H 1.09001 * 112.84680 * 43.80447 * 7 6 5 9 9 C 1.53778 * 113.61509 * 175.00195 * 7 6 5 10 10 C 1.53779 * 87.08439 * 139.98098 * 9 7 6 11 11 C 1.53001 * 113.61409 * 89.11267 * 10 9 7 12 12 O 1.42900 * 113.61355 * 220.01953 * 10 9 7 13 13 C 1.53784 * 113.61419 * 272.49806 * 7 6 5 14 14 C 1.39588 * 120.31315 * 0.02562 * 4 3 2 15 15 C 1.36329 * 120.15928 * 359.73885 * 14 4 3 16 16 C 1.40867 * 120.08313 * 179.97438 * 2 1 3 17 17 C 1.41139 * 120.15395 * 359.97438 * 16 2 1 18 18 H 1.08003 * 120.00271 * 333.97601 * 17 16 2 19 19 C 1.39866 * 120.00139 * 153.97286 * 17 16 2 20 20 N 1.30909 * 119.99991 * 343.41001 * 19 17 16 21 21 Si 1.86796 * 120.00347 * 163.40253 * 19 17 16 22 22 H 1.48497 * 109.47478 * 265.62368 * 21 19 17 23 23 H 1.48507 * 109.46879 * 25.62250 * 21 19 17 24 24 H 1.48496 * 109.47200 * 145.62124 * 21 19 17 25 25 H 1.09001 * 109.46915 * 270.01714 * 1 2 3 26 26 H 1.08993 * 109.47188 * 30.01424 * 1 2 3 27 27 H 1.09000 * 109.47348 * 150.02005 * 1 2 3 28 28 H 1.08007 * 119.91507 * 359.96651 * 3 2 1 29 29 H 0.96995 * 120.00150 * 359.97438 * 5 4 3 30 30 H 1.09003 * 109.46933 * 299.99889 * 6 5 4 31 31 H 1.09003 * 109.47112 * 59.99649 * 6 5 4 32 32 H 1.09006 * 113.61057 * 254.52988 * 9 7 6 33 33 H 1.09002 * 113.61996 * 25.42874 * 9 7 6 34 34 H 1.09001 * 109.47018 * 60.00261 * 11 10 9 35 35 H 1.09002 * 109.47125 * 180.02562 * 11 10 9 36 36 H 1.08997 * 109.47381 * 300.00483 * 11 10 9 37 37 H 0.96702 * 113.99432 * 179.97438 * 12 10 9 38 38 H 1.09000 * 113.61326 * 334.56389 * 13 7 6 39 39 H 1.08993 * 113.61627 * 105.46985 * 13 7 6 40 40 H 1.07996 * 119.91681 * 179.97438 * 14 4 3 41 41 H 1.08003 * 120.07733 * 180.26931 * 15 14 4 42 42 H 0.96988 * 120.00282 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1819 0.0005 5 7 4.2752 2.3873 0.0000 6 6 5.7402 2.3934 0.0011 7 6 6.2441 3.8380 0.0009 8 1 5.6985 4.4767 0.6955 9 6 7.7723 3.9574 0.1248 10 6 7.6884 5.0946 -0.9069 11 6 7.4767 6.4749 -0.2817 12 8 8.7462 5.0753 -1.8675 13 6 6.3902 4.4393 -1.4070 14 6 4.2922 -0.0221 0.0005 15 6 3.6221 -1.2093 0.0054 16 6 2.2131 -1.2189 0.0005 17 6 1.5125 -2.4441 0.0016 18 1 0.5150 -2.4954 0.4124 19 6 2.1100 -3.5919 -0.5293 20 7 3.1570 -3.4844 -1.3078 21 14 1.4142 -5.2782 -0.1275 22 1 2.1424 -5.8505 1.0332 23 1 -0.0275 -5.1522 0.2058 24 1 1.5743 -6.1725 -1.3021 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5140 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6504 2.1152 -0.0005 29 1 3.7867 3.2253 -0.0011 30 1 6.1049 1.8819 0.8919 31 1 6.1063 1.8803 -0.8881 32 1 8.1062 4.2848 1.1094 33 1 8.3095 3.0799 -0.2353 34 1 8.3075 6.7024 0.3863 35 1 7.4270 7.2268 -1.0693 36 1 6.5446 6.4789 0.2833 37 1 8.6986 5.7880 -2.5193 38 1 6.5495 3.6936 -2.1859 39 1 5.6084 5.1557 -1.6591 40 1 5.3722 -0.0131 0.0005 41 1 4.1698 -2.1401 0.0098 42 1 3.5715 -4.2803 -1.6757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168343537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:19 Heat of formation + Delta-G solvation = -39.007834 kcal Electronic energy + Delta-G solvation = -20667.062187 eV Core-core repulsion = 17610.896912 eV Total energy + Delta-G solvation = -3056.165275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94604 -39.79833 -37.09835 -35.81660 -34.70504 -32.72269 -31.27371 -29.82730 -28.20142 -26.87046 -26.77248 -25.54998 -23.11464 -22.52286 -20.83303 -19.87255 -18.98812 -18.01265 -17.28608 -16.80619 -16.59385 -16.22603 -15.69728 -15.43063 -15.41778 -14.63351 -14.45870 -14.38983 -14.08470 -13.66116 -13.54599 -13.46238 -13.04767 -12.88300 -12.84168 -12.76201 -12.70780 -12.53017 -12.29326 -12.16141 -12.06169 -11.67830 -11.37151 -11.21329 -11.09641 -11.00796 -10.63730 -10.17790 -9.18139 -8.50213 -8.11293 -5.95887 1.11488 1.20429 1.40655 1.53095 1.60150 2.28638 2.83496 2.88832 3.30912 3.55031 3.59848 3.80783 3.84835 3.86239 4.27363 4.37869 4.47951 4.51209 4.59025 4.76366 4.77980 4.78499 4.81011 4.87425 4.92834 4.97769 5.06656 5.07491 5.15461 5.18855 5.30889 5.33215 5.35327 5.49125 5.53282 5.76484 5.93766 5.98858 6.25755 6.45850 6.70349 6.90347 6.91329 7.13877 7.20084 7.36725 8.52960 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032017 B = 0.003332 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.331318 B = 8402.091276 C = 9001.813780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.165 4.165 3 C -0.169 4.169 4 C 0.114 3.886 5 N -0.748 5.748 6 C 0.150 3.850 7 C -0.107 4.107 8 H 0.113 0.887 9 C -0.119 4.119 10 C 0.103 3.897 11 C -0.156 4.156 12 O -0.574 6.574 13 C -0.155 4.155 14 C -0.185 4.185 15 C -0.143 4.143 16 C 0.036 3.964 17 C -0.493 4.493 18 H 0.074 0.926 19 C 0.029 3.971 20 N -0.847 5.847 21 Si 0.973 3.027 22 H -0.268 1.268 23 H -0.258 1.258 24 H -0.274 1.274 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.117 0.883 29 H 0.397 0.603 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.390 0.610 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.392 16.941 1.465 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.167 4.167 3 C -0.191 4.191 4 C 0.015 3.985 5 N -0.383 5.383 6 C 0.025 3.975 7 C -0.125 4.125 8 H 0.131 0.869 9 C -0.157 4.157 10 C 0.063 3.937 11 C -0.213 4.213 12 O -0.382 6.382 13 C -0.193 4.193 14 C -0.208 4.208 15 C -0.163 4.163 16 C 0.033 3.967 17 C -0.525 4.525 18 H 0.092 0.908 19 C -0.182 4.182 20 N -0.475 5.475 21 Si 0.796 3.204 22 H -0.193 1.193 23 H -0.182 1.182 24 H -0.199 1.199 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.232 0.768 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.240 0.760 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.909 16.229 1.661 17.717 hybrid contribution -0.310 -0.554 -0.445 0.776 sum 6.599 15.675 1.216 17.051 Atomic orbital electron populations 1.20404 0.91527 1.01123 1.00689 1.19784 0.96062 0.92592 1.08213 1.19982 0.91843 0.97137 1.10134 1.17478 0.90960 0.86137 1.03971 1.43858 1.04342 1.04221 1.85891 1.21029 0.80892 0.96448 0.99131 1.22478 0.96438 0.95028 0.98565 0.86891 1.23105 0.94968 0.98354 0.99316 1.22683 0.86130 0.95425 0.89506 1.22129 1.03372 0.93875 1.01903 1.86536 1.50433 1.56404 1.44849 1.23717 0.98620 1.00404 0.96531 1.20192 0.97712 0.92212 1.10653 1.20835 0.94990 0.96111 1.04383 1.17696 0.92036 0.92978 0.94006 1.19571 1.02243 0.93664 1.37003 0.90825 1.26617 0.94768 1.04477 0.92380 1.69939 1.20862 1.32082 1.24666 0.85323 0.79651 0.76994 0.78469 1.19292 1.18165 1.19888 0.92579 0.91859 0.93257 0.86462 0.76797 0.94069 0.95021 0.89338 0.90612 0.91221 0.90502 0.90338 0.75973 0.91226 0.90040 0.88610 0.88829 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.32 9.39 71.24 0.67 -2.65 16 2 C -0.16 -8.04 5.90 -19.66 -0.12 -8.15 16 3 C -0.17 -7.39 9.46 22.15 0.21 -7.18 16 4 C 0.11 4.95 6.67 38.67 0.26 5.21 16 5 N -0.75 -24.80 5.70 -338.99 -1.93 -26.73 16 6 C 0.15 4.38 4.73 86.38 0.41 4.79 16 7 C -0.11 -2.19 3.40 -10.27 -0.03 -2.23 16 8 H 0.11 1.96 7.66 -2.39 -0.02 1.94 16 9 C -0.12 -2.36 7.06 31.12 0.22 -2.14 16 10 C 0.10 1.78 1.94 -10.27 -0.02 1.76 16 11 C -0.16 -1.80 9.32 71.98 0.67 -1.13 16 12 O -0.57 -11.00 13.50 -148.98 -2.01 -13.01 16 13 C -0.15 -3.06 7.02 31.12 0.22 -2.84 16 14 C -0.19 -9.07 9.23 22.15 0.20 -8.87 16 15 C -0.14 -7.94 8.62 22.48 0.19 -7.75 16 16 C 0.04 1.99 5.56 -21.27 -0.12 1.87 16 17 C -0.49 -27.49 8.10 23.38 0.19 -27.30 16 18 H 0.07 3.94 6.88 -2.91 -0.02 3.92 16 19 C 0.03 1.53 5.15 85.22 0.44 1.97 16 20 N -0.85 -47.32 10.99 21.82 0.24 -47.08 16 21 Si 0.97 40.74 29.59 68.60 2.03 42.77 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 27 H 0.05 2.14 6.78 -2.39 -0.02 2.12 16 28 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 29 H 0.40 11.07 8.47 -92.71 -0.79 10.28 16 30 H 0.04 1.27 7.93 -2.39 -0.02 1.25 16 31 H 0.03 1.05 7.63 -2.39 -0.02 1.03 16 32 H 0.09 1.48 8.10 -2.38 -0.02 1.46 16 33 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.82 7.34 -2.39 -0.02 0.80 16 37 H 0.39 4.14 9.04 -74.06 -0.67 3.47 16 38 H 0.07 1.69 7.90 -2.39 -0.02 1.67 16 39 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 40 H 0.10 4.37 6.68 -2.91 -0.02 4.35 16 41 H 0.09 5.51 6.24 -2.91 -0.02 5.50 16 42 H 0.28 14.31 8.30 -92.72 -0.77 13.54 16 Total: -1.00 -65.79 338.35 1.29 -64.50 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.43 Total: 34.20 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 3.39 Total: -54.65 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.69 Total: -73.81 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -2.01 Total: -13.01 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -65.79 1.29 -64.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168343537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.489 kcal (2) G-P(sol) polarization free energy of solvation -65.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds