Wall clock time and date at job start Mon Mar 30 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36356 * 120.08100 * 2 1 4 4 C 1.39543 * 120.16163 * 180.02562 * 3 2 1 5 5 N 1.38864 * 119.84417 * 180.02562 * 4 3 2 6 6 C 1.46507 * 119.99953 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.46750 * 179.97438 * 6 5 4 8 8 H 1.09001 * 113.03972 * 316.97506 * 7 6 5 9 9 C 1.54042 * 113.86349 * 185.00084 * 7 6 5 10 10 C 1.54033 * 85.82125 * 223.27300 * 9 7 6 11 11 C 1.52999 * 113.86416 * 136.72534 * 10 9 7 12 12 C 1.52999 * 113.86687 * 268.29909 * 10 9 7 13 13 O 1.44176 * 113.86809 * 89.13081 * 7 6 5 14 14 C 1.39591 * 120.31696 * 0.02562 * 4 3 2 15 15 C 1.36324 * 120.15928 * 359.97438 * 14 4 3 16 16 C 1.40864 * 120.07927 * 179.72377 * 2 1 3 17 17 C 1.41135 * 120.15643 * 359.97358 * 16 2 1 18 18 H 1.07994 * 120.00513 * 329.07259 * 17 16 2 19 19 C 1.39875 * 119.99889 * 149.07054 * 17 16 2 20 20 N 1.30903 * 119.99619 * 162.43370 * 19 17 16 21 21 Si 1.86801 * 119.99934 * 342.42877 * 19 17 16 22 22 H 1.48504 * 109.46939 * 95.38108 * 21 19 17 23 23 H 1.48504 * 109.47100 * 215.38075 * 21 19 17 24 24 H 1.48495 * 109.47108 * 335.38223 * 21 19 17 25 25 H 1.09000 * 109.47714 * 90.00007 * 1 2 3 26 26 H 1.09006 * 109.47050 * 330.00140 * 1 2 3 27 27 H 1.09004 * 109.47052 * 210.00547 * 1 2 3 28 28 H 1.07998 * 119.92105 * 0.02562 * 3 2 1 29 29 H 0.96999 * 119.99545 * 359.97438 * 5 4 3 30 30 H 1.08998 * 109.47040 * 299.99778 * 6 5 4 31 31 H 1.08996 * 109.47008 * 59.99443 * 6 5 4 32 32 H 1.09001 * 113.81229 * 337.49694 * 9 7 6 33 33 H 1.09000 * 113.81795 * 108.92785 * 9 7 6 34 34 H 1.08994 * 109.47445 * 60.00015 * 11 10 9 35 35 H 1.09002 * 109.46854 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.47241 * 299.99187 * 11 10 9 37 37 H 1.09002 * 109.47026 * 59.99996 * 12 10 9 38 38 H 1.09000 * 109.47671 * 179.97438 * 12 10 9 39 39 H 1.09001 * 109.47369 * 300.00141 * 12 10 9 40 40 H 1.07999 * 119.92143 * 179.97438 * 14 4 3 41 41 H 1.07998 * 120.08533 * 180.02562 * 15 14 4 42 42 H 0.97006 * 119.99348 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1819 -0.0005 5 7 4.2752 2.3873 0.0000 6 6 5.7403 2.3934 0.0000 7 6 6.2442 3.8379 0.0000 8 1 5.6923 4.4822 -0.6844 9 6 7.7745 3.9641 -0.1228 10 6 7.6610 5.0389 0.9747 11 6 8.7342 4.9314 2.0598 12 6 7.4967 6.4607 0.4340 13 8 6.4175 4.3953 1.3183 14 6 4.2922 -0.0221 -0.0016 15 6 3.6221 -1.2093 -0.0016 16 6 2.2130 -1.2189 0.0059 17 6 1.5123 -2.4441 0.0123 18 1 0.5480 -2.5122 0.4937 19 6 2.0669 -3.5701 -0.6048 20 7 1.6122 -4.7638 -0.3186 21 14 3.4563 -3.3705 -1.8374 22 1 4.7591 -3.5548 -1.1489 23 1 3.3155 -4.3869 -2.9109 24 1 3.3988 -2.0111 -2.4322 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6505 2.1152 0.0004 29 1 3.7867 3.2253 0.0004 30 1 6.1057 1.8807 0.8898 31 1 6.1057 1.8814 -0.8901 32 1 8.3162 3.0713 0.1899 33 1 8.1085 4.3494 -1.0861 34 1 9.7203 5.0351 1.6071 35 1 8.5870 5.7218 2.7959 36 1 8.6595 3.9607 2.5498 37 1 6.5903 6.5177 -0.1688 38 1 7.4232 7.1601 1.2668 39 1 8.3590 6.7174 -0.1814 40 1 5.3721 -0.0132 -0.0025 41 1 4.1697 -2.1401 -0.0021 42 1 1.9971 -5.5448 -0.7464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168457074.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:39 Heat of formation + Delta-G solvation = -2.147070 kcal Electronic energy + Delta-G solvation = -20813.976242 eV Core-core repulsion = 17759.409369 eV Total energy + Delta-G solvation = -3054.566873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93285 -38.35034 -35.42254 -33.16650 -32.47825 -31.30408 -30.55556 -28.85527 -27.84787 -26.69765 -25.49528 -23.57272 -21.99625 -21.15396 -19.48012 -19.14153 -17.33019 -16.66278 -16.42293 -16.12057 -15.31807 -14.86907 -14.48827 -14.11824 -13.82635 -13.49360 -13.25866 -13.07680 -12.74497 -12.51207 -12.42111 -12.41248 -12.33994 -12.10545 -11.91820 -11.65631 -11.33267 -11.13954 -10.85614 -10.75995 -10.67731 -10.55603 -10.16389 -9.79446 -9.77600 -9.36470 -9.11487 -8.62616 -7.56307 -6.71865 -6.55982 -4.11506 2.69937 2.84120 3.21987 3.31491 3.34323 3.43875 3.91079 4.13977 4.25763 4.52996 4.62488 4.67129 4.83522 4.93286 5.11555 5.22499 5.26449 5.36617 5.43971 5.51117 5.59361 5.62977 5.75739 5.86763 5.97802 6.02181 6.06788 6.12792 6.33291 6.34495 6.47551 6.66909 6.70223 6.88797 7.00140 7.17474 7.30596 7.50924 7.68906 7.94593 8.12435 8.34104 8.53161 8.60186 8.88665 9.03350 10.32362 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028641 B = 0.003739 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.397796 B = 7486.181121 C = 8090.758377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.138 4.138 3 C -0.145 4.145 4 C 0.097 3.903 5 N -0.759 5.759 6 C 0.141 3.859 7 C 0.055 3.945 8 H 0.093 0.907 9 C -0.171 4.171 10 C 0.078 3.922 11 C -0.142 4.142 12 C -0.152 4.152 13 O -0.364 6.364 14 C -0.149 4.149 15 C -0.195 4.195 16 C 0.061 3.939 17 C -0.452 4.452 18 H 0.090 0.910 19 C 0.083 3.917 20 N -0.827 5.827 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.247 1.247 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.387 0.613 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.166 17.201 -0.983 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C -0.167 4.167 4 C 0.000 4.000 5 N -0.395 5.395 6 C 0.015 3.985 7 C -0.003 4.003 8 H 0.111 0.889 9 C -0.209 4.209 10 C 0.039 3.961 11 C -0.199 4.199 12 C -0.209 4.209 13 O -0.284 6.284 14 C -0.171 4.171 15 C -0.215 4.215 16 C 0.058 3.942 17 C -0.483 4.483 18 H 0.108 0.892 19 C -0.133 4.133 20 N -0.454 5.454 21 Si 0.733 3.267 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.170 1.170 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.220 0.780 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.143 16.814 -0.753 20.754 hybrid contribution 0.620 0.185 -0.679 0.938 sum 12.763 16.999 -1.433 21.305 Atomic orbital electron populations 1.20464 0.92989 1.00618 1.00430 1.19358 0.94606 0.92312 1.07658 1.19808 0.91535 0.96793 1.08577 1.17280 0.90678 0.85074 1.06958 1.43809 1.03149 1.05351 1.87145 1.21142 0.82966 0.93148 1.01195 1.23629 0.95597 0.95517 0.85518 0.88948 1.24824 0.96451 0.99870 0.99792 1.22695 0.86113 0.92964 0.94370 1.21789 0.96950 1.03228 0.97955 1.21950 1.02619 0.94810 1.01559 1.89869 1.40970 1.68549 1.29013 1.19931 0.97212 0.91759 1.08224 1.20612 0.94642 0.95863 1.10356 1.17501 0.91026 0.92840 0.92844 1.19271 1.05881 0.91426 1.31683 0.89223 1.26023 0.96457 0.94335 0.96478 1.69740 1.39715 0.98960 1.36944 0.86404 0.80658 0.79360 0.80240 1.20106 1.22256 1.16988 0.93165 0.94290 0.91669 0.88872 0.77976 0.92288 0.91943 0.88458 0.90758 0.91037 0.91890 0.91343 0.91784 0.91565 0.91111 0.89026 0.88248 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.62 36.00 0.35 -1.47 16 2 C -0.14 -3.23 5.90 -104.31 -0.62 -3.85 16 3 C -0.15 -3.12 9.46 -39.77 -0.38 -3.50 16 4 C 0.10 2.04 6.67 -83.69 -0.56 1.49 16 5 N -0.76 -12.89 5.70 -58.50 -0.33 -13.22 16 6 C 0.14 2.03 4.97 -4.04 -0.02 2.01 16 7 C 0.06 0.65 4.18 -26.28 -0.11 0.54 16 8 H 0.09 0.98 7.85 -51.93 -0.41 0.58 16 9 C -0.17 -1.58 7.11 -25.65 -0.18 -1.76 16 10 C 0.08 0.75 1.82 -90.17 -0.16 0.59 16 11 C -0.14 -1.16 9.48 37.16 0.35 -0.81 16 12 C -0.15 -1.17 9.38 37.16 0.35 -0.82 16 13 O -0.36 -4.86 11.97 -35.23 -0.42 -5.29 16 14 C -0.15 -3.34 9.23 -39.77 -0.37 -3.71 16 15 C -0.19 -4.86 7.09 -39.26 -0.28 -5.13 16 16 C 0.06 1.59 5.09 -106.79 -0.54 1.05 16 17 C -0.45 -12.52 8.89 -37.87 -0.34 -12.86 16 18 H 0.09 2.58 6.54 -52.49 -0.34 2.23 16 19 C 0.08 2.25 5.41 -17.34 -0.09 2.16 16 20 N -0.83 -23.00 13.93 55.54 0.77 -22.22 16 21 Si 0.91 21.66 24.51 -169.99 -4.17 17.49 16 22 H -0.27 -6.39 6.72 56.52 0.38 -6.01 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.25 -6.04 6.85 56.52 0.39 -5.65 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.06 1.40 6.30 -51.93 -0.33 1.07 16 28 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 29 H 0.39 5.95 8.47 -40.82 -0.35 5.60 16 30 H 0.06 0.93 7.93 -51.93 -0.41 0.51 16 31 H 0.06 0.88 7.92 -51.93 -0.41 0.47 16 32 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.51 7.59 -51.93 -0.39 0.12 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 1.84 6.68 -52.49 -0.35 1.49 16 41 H 0.10 2.49 4.78 -52.49 -0.25 2.24 16 42 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -29.84 334.57 -8.34 -38.17 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.63 Total: 6.11 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -2.60 Total: -26.09 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.44 Total: -35.45 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.42 Total: -5.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.17 Total: 17.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.84 -8.34 -38.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168457074.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.027 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds