Wall clock time and date at job start Mon Mar 30 2020 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36356 * 120.08100 * 2 1 4 4 C 1.39543 * 120.16163 * 180.02562 * 3 2 1 5 5 N 1.38864 * 119.84417 * 180.02562 * 4 3 2 6 6 C 1.46507 * 119.99953 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.46750 * 179.97438 * 6 5 4 8 8 H 1.09001 * 113.03972 * 316.97506 * 7 6 5 9 9 C 1.54042 * 113.86349 * 185.00084 * 7 6 5 10 10 C 1.54033 * 85.82125 * 223.27300 * 9 7 6 11 11 C 1.52999 * 113.86416 * 136.72534 * 10 9 7 12 12 C 1.52999 * 113.86687 * 268.29909 * 10 9 7 13 13 O 1.44176 * 113.86809 * 89.13081 * 7 6 5 14 14 C 1.39591 * 120.31696 * 0.02562 * 4 3 2 15 15 C 1.36324 * 120.15928 * 359.97438 * 14 4 3 16 16 C 1.40864 * 120.07927 * 179.72377 * 2 1 3 17 17 C 1.41135 * 120.15643 * 359.97358 * 16 2 1 18 18 H 1.07994 * 120.00513 * 329.07259 * 17 16 2 19 19 C 1.39875 * 119.99889 * 149.07054 * 17 16 2 20 20 N 1.30903 * 119.99619 * 162.43370 * 19 17 16 21 21 Si 1.86801 * 119.99934 * 342.42877 * 19 17 16 22 22 H 1.48504 * 109.46939 * 95.38108 * 21 19 17 23 23 H 1.48504 * 109.47100 * 215.38075 * 21 19 17 24 24 H 1.48495 * 109.47108 * 335.38223 * 21 19 17 25 25 H 1.09000 * 109.47714 * 90.00007 * 1 2 3 26 26 H 1.09006 * 109.47050 * 330.00140 * 1 2 3 27 27 H 1.09004 * 109.47052 * 210.00547 * 1 2 3 28 28 H 1.07998 * 119.92105 * 0.02562 * 3 2 1 29 29 H 0.96999 * 119.99545 * 359.97438 * 5 4 3 30 30 H 1.08998 * 109.47040 * 299.99778 * 6 5 4 31 31 H 1.08996 * 109.47008 * 59.99443 * 6 5 4 32 32 H 1.09001 * 113.81229 * 337.49694 * 9 7 6 33 33 H 1.09000 * 113.81795 * 108.92785 * 9 7 6 34 34 H 1.08994 * 109.47445 * 60.00015 * 11 10 9 35 35 H 1.09002 * 109.46854 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.47241 * 299.99187 * 11 10 9 37 37 H 1.09002 * 109.47026 * 59.99996 * 12 10 9 38 38 H 1.09000 * 109.47671 * 179.97438 * 12 10 9 39 39 H 1.09001 * 109.47369 * 300.00141 * 12 10 9 40 40 H 1.07999 * 119.92143 * 179.97438 * 14 4 3 41 41 H 1.07998 * 120.08533 * 180.02562 * 15 14 4 42 42 H 0.97006 * 119.99348 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1819 -0.0005 5 7 4.2752 2.3873 0.0000 6 6 5.7403 2.3934 0.0000 7 6 6.2442 3.8379 0.0000 8 1 5.6923 4.4822 -0.6844 9 6 7.7745 3.9641 -0.1228 10 6 7.6610 5.0389 0.9747 11 6 8.7342 4.9314 2.0598 12 6 7.4967 6.4607 0.4340 13 8 6.4175 4.3953 1.3183 14 6 4.2922 -0.0221 -0.0016 15 6 3.6221 -1.2093 -0.0016 16 6 2.2130 -1.2189 0.0059 17 6 1.5123 -2.4441 0.0123 18 1 0.5480 -2.5122 0.4937 19 6 2.0669 -3.5701 -0.6048 20 7 1.6122 -4.7638 -0.3186 21 14 3.4563 -3.3705 -1.8374 22 1 4.7591 -3.5548 -1.1489 23 1 3.3155 -4.3869 -2.9109 24 1 3.3988 -2.0111 -2.4322 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6505 2.1152 0.0004 29 1 3.7867 3.2253 0.0004 30 1 6.1057 1.8807 0.8898 31 1 6.1057 1.8814 -0.8901 32 1 8.3162 3.0713 0.1899 33 1 8.1085 4.3494 -1.0861 34 1 9.7203 5.0351 1.6071 35 1 8.5870 5.7218 2.7959 36 1 8.6595 3.9607 2.5498 37 1 6.5903 6.5177 -0.1688 38 1 7.4232 7.1601 1.2668 39 1 8.3590 6.7174 -0.1814 40 1 5.3721 -0.0132 -0.0025 41 1 4.1697 -2.1401 -0.0021 42 1 1.9971 -5.5448 -0.7464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168457074.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:38 Heat of formation + Delta-G solvation = -20.606432 kcal Electronic energy + Delta-G solvation = -20814.776700 eV Core-core repulsion = 17759.409369 eV Total energy + Delta-G solvation = -3055.367331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75926 -40.10584 -36.97620 -35.00688 -33.37677 -32.97821 -31.98576 -30.19036 -28.46544 -28.23430 -26.83231 -25.32619 -23.42616 -22.56099 -20.87743 -20.17722 -19.26263 -17.99287 -17.49916 -17.10317 -16.84438 -16.37207 -15.71949 -15.64296 -15.03647 -14.94261 -14.51869 -14.39821 -14.23888 -14.07272 -13.73937 -13.66188 -13.21725 -13.10034 -13.05866 -12.81670 -12.74312 -12.58618 -12.51969 -12.45471 -11.98238 -11.78590 -11.58507 -11.29156 -11.26705 -10.96974 -10.62132 -10.38440 -9.35932 -8.72430 -8.28749 -6.12219 0.86845 0.97970 1.29021 1.42832 1.52239 2.20178 2.51516 2.73850 2.80652 3.32789 3.58202 3.79076 3.90237 4.00769 4.11629 4.26090 4.33305 4.36579 4.41976 4.62538 4.66859 4.70521 4.72781 4.77728 4.85720 4.91792 4.96859 4.99771 5.02930 5.09050 5.15620 5.22226 5.32673 5.36397 5.41488 5.50328 5.53748 5.71358 5.86012 6.04397 6.29156 6.48439 6.67572 6.92782 7.01661 7.17721 8.37493 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028641 B = 0.003739 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.397796 B = 7486.181121 C = 8090.758377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.140 4.140 3 C -0.156 4.156 4 C 0.124 3.876 5 N -0.749 5.749 6 C 0.136 3.864 7 C 0.055 3.945 8 H 0.107 0.893 9 C -0.162 4.162 10 C 0.072 3.928 11 C -0.143 4.143 12 C -0.150 4.150 13 O -0.399 6.399 14 C -0.168 4.168 15 C -0.201 4.201 16 C 0.026 3.974 17 C -0.479 4.479 18 H 0.059 0.941 19 C 0.042 3.958 20 N -0.873 5.873 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.255 1.255 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.126 0.874 29 H 0.399 0.601 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.316 20.554 -1.988 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C -0.178 4.178 4 C 0.024 3.976 5 N -0.383 5.383 6 C 0.012 3.988 7 C -0.002 4.002 8 H 0.124 0.876 9 C -0.199 4.199 10 C 0.033 3.967 11 C -0.200 4.200 12 C -0.207 4.207 13 O -0.320 6.320 14 C -0.190 4.190 15 C -0.221 4.221 16 C 0.022 3.978 17 C -0.510 4.510 18 H 0.077 0.923 19 C -0.169 4.169 20 N -0.502 5.502 21 Si 0.785 3.215 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.179 1.179 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.143 0.857 29 H 0.233 0.767 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.316 20.214 -1.754 24.833 hybrid contribution 0.013 -0.543 -0.272 0.607 sum 14.330 19.671 -2.025 24.421 Atomic orbital electron populations 1.20470 0.91421 1.01181 1.01203 1.19769 0.96153 0.92266 1.06015 1.20123 0.91994 0.97359 1.08292 1.17500 0.90938 0.86170 1.02973 1.43944 1.04506 1.04439 1.85461 1.21311 0.81098 0.95473 1.00947 1.23625 0.97468 0.93719 0.85425 0.87588 1.24760 0.94413 0.99883 1.00881 1.23000 0.84954 0.93923 0.94830 1.21828 0.97772 1.02508 0.97875 1.21966 1.03449 0.93498 1.01818 1.89845 1.42847 1.69270 1.30019 1.20144 0.98523 0.91406 1.08934 1.20688 0.94362 0.96672 1.10396 1.17657 0.91797 0.93156 0.95145 1.19258 1.05385 0.93069 1.33337 0.92273 1.26650 0.98567 0.93953 0.97715 1.69783 1.41889 0.99619 1.38922 0.85567 0.78620 0.78793 0.78523 1.19174 1.21061 1.17933 0.92213 0.91158 0.93618 0.85657 0.76652 0.93581 0.90996 0.88440 0.88466 0.88821 0.91656 0.92756 0.92116 0.91482 0.88954 0.86772 0.89069 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.50 9.62 71.24 0.69 -2.81 16 2 C -0.14 -6.50 5.90 -19.66 -0.12 -6.61 16 3 C -0.16 -6.29 9.46 22.15 0.21 -6.08 16 4 C 0.12 4.88 6.67 38.67 0.26 5.14 16 5 N -0.75 -22.91 5.70 -338.99 -1.93 -24.85 16 6 C 0.14 3.52 4.97 86.38 0.43 3.95 16 7 C 0.06 1.12 4.18 30.89 0.13 1.24 16 8 H 0.11 1.85 7.85 -2.39 -0.02 1.83 16 9 C -0.16 -2.42 7.11 31.30 0.22 -2.20 16 10 C 0.07 1.17 1.82 -10.50 -0.02 1.15 16 11 C -0.14 -1.99 9.48 71.98 0.68 -1.30 16 12 C -0.15 -1.81 9.38 71.98 0.67 -1.13 16 13 O -0.40 -9.72 11.97 -148.98 -1.78 -11.51 16 14 C -0.17 -7.21 9.23 22.15 0.20 -7.01 16 15 C -0.20 -10.00 7.09 22.48 0.16 -9.84 16 16 C 0.03 1.35 5.09 -21.27 -0.11 1.24 16 17 C -0.48 -27.79 8.89 23.38 0.21 -27.58 16 18 H 0.06 3.65 6.54 -2.91 -0.02 3.64 16 19 C 0.04 2.35 5.41 85.23 0.46 2.81 16 20 N -0.87 -50.76 13.93 21.82 0.30 -50.46 16 21 Si 0.96 45.56 24.51 68.60 1.68 47.24 16 22 H -0.27 -12.06 6.72 99.48 0.67 -11.39 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.26 -12.32 6.85 99.48 0.68 -11.64 16 25 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.07 2.36 8.08 -2.38 -0.02 2.34 16 27 H 0.04 2.02 6.30 -2.39 -0.02 2.00 16 28 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 29 H 0.40 10.69 8.47 -92.71 -0.79 9.91 16 30 H 0.05 1.34 7.93 -2.39 -0.02 1.32 16 31 H 0.07 1.77 7.92 -2.39 -0.02 1.75 16 32 H 0.10 1.46 8.05 -2.39 -0.02 1.44 16 33 H 0.10 1.03 8.10 -2.39 -0.02 1.01 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.77 7.59 -2.39 -0.02 0.76 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 4.32 6.68 -2.91 -0.02 4.30 16 41 H 0.09 4.60 4.78 -2.91 -0.01 4.59 16 42 H 0.29 15.10 8.30 -92.70 -0.77 14.34 16 Total: -1.00 -66.41 334.57 2.51 -63.90 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.16 Total: 24.69 kcal Atomic # 6 Polarization: -53.10 SS G_CDS: 4.08 Total: -49.02 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.63 Total: -75.30 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.78 Total: -11.51 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.68 Total: 47.24 kcal Total: -66.41 2.51 -63.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168457074.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.293 kcal (2) G-P(sol) polarization free energy of solvation -66.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds