Wall clock time and date at job start Mon Mar 30 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36350 * 120.08255 * 2 1 4 4 C 1.39549 * 120.16624 * 180.02562 * 3 2 1 5 5 N 1.38849 * 119.84604 * 180.27579 * 4 3 2 6 6 C 1.46496 * 120.00158 * 179.72626 * 5 4 3 7 7 C 1.53006 * 109.47364 * 180.02562 * 6 5 4 8 8 H 1.09000 * 112.67697 * 51.01199 * 7 6 5 9 9 C 1.53367 * 113.39377 * 181.58233 * 7 6 5 10 10 C 1.53363 * 81.25941 * 141.38495 * 9 7 6 11 11 C 1.52998 * 113.39059 * 218.61359 * 10 9 7 12 12 C 1.53000 * 113.42940 * 88.42073 * 10 9 7 13 13 O 1.43345 * 113.39164 * 280.49792 * 7 6 5 14 14 C 1.39593 * 120.30983 * 0.02562 * 4 3 2 15 15 C 1.36316 * 120.16272 * 0.02562 * 14 4 3 16 16 C 1.40869 * 120.08248 * 180.02562 * 2 1 3 17 17 C 1.41142 * 120.15054 * 359.97438 * 16 2 1 18 18 H 1.07999 * 120.00378 * 329.62286 * 17 16 2 19 19 C 1.39871 * 119.99816 * 149.63038 * 17 16 2 20 20 N 1.30897 * 119.99913 * 162.15764 * 19 17 16 21 21 Si 1.86803 * 119.99846 * 342.15991 * 19 17 16 22 22 H 1.48493 * 109.47360 * 95.39125 * 21 19 17 23 23 H 1.48501 * 109.47048 * 215.39372 * 21 19 17 24 24 H 1.48500 * 109.46762 * 335.39230 * 21 19 17 25 25 H 1.09006 * 109.47331 * 269.97341 * 1 2 3 26 26 H 1.08997 * 109.47571 * 29.97313 * 1 2 3 27 27 H 1.09000 * 109.47582 * 149.97996 * 1 2 3 28 28 H 1.08005 * 119.92252 * 0.03063 * 3 2 1 29 29 H 0.97007 * 120.00053 * 359.72925 * 5 4 3 30 30 H 1.09000 * 109.47208 * 300.00157 * 6 5 4 31 31 H 1.08998 * 109.47382 * 60.00279 * 6 5 4 32 32 H 1.09008 * 114.56513 * 254.47868 * 9 7 6 33 33 H 1.08995 * 114.56776 * 28.28802 * 9 7 6 34 34 H 1.09006 * 109.47136 * 178.41849 * 11 10 9 35 35 H 1.08996 * 109.47413 * 298.42263 * 11 10 9 36 36 H 1.08999 * 109.46844 * 58.42210 * 11 10 9 37 37 H 1.08996 * 109.47543 * 301.55757 * 12 10 9 38 38 H 1.08998 * 109.47405 * 61.56718 * 12 10 9 39 39 H 1.09009 * 109.47014 * 181.55716 * 12 10 9 40 40 H 1.07998 * 119.91535 * 179.97438 * 14 4 3 41 41 H 1.07997 * 120.08344 * 180.02562 * 15 14 4 42 42 H 0.97008 * 120.00080 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1798 0.0000 4 6 3.5859 1.1819 -0.0005 5 7 4.2752 2.3872 0.0053 6 6 5.7401 2.3933 0.0108 7 6 6.2442 3.8379 0.0172 8 1 5.7822 4.4407 0.7991 9 6 7.7734 3.9494 -0.0156 10 6 7.4341 5.1252 -0.9400 11 6 8.3937 5.2639 -2.1236 12 6 7.2229 6.4442 -0.1940 13 8 6.2102 4.4583 -1.2747 14 6 4.2922 -0.0222 -0.0016 15 6 3.6221 -1.2093 -0.0027 16 6 2.2131 -1.2189 -0.0005 17 6 1.5123 -2.4441 -0.0005 18 1 0.5440 -2.5125 0.4728 19 6 2.0721 -3.5699 -0.6134 20 7 1.6187 -4.7641 -0.3276 21 14 3.4669 -3.3691 -1.8398 22 1 4.7668 -3.5500 -1.1450 23 1 3.3331 -4.3872 -2.9126 24 1 3.4094 -2.0106 -2.4366 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6505 2.1152 0.0005 29 1 3.7867 3.2253 0.0057 30 1 6.1022 1.8786 0.9007 31 1 6.1090 1.8834 -0.8792 32 1 8.2274 4.2353 0.9333 33 1 8.2780 3.1176 -0.5070 34 1 8.0786 6.0977 -2.7510 35 1 9.4024 5.4482 -1.7539 36 1 8.3836 4.3445 -2.7090 37 1 6.4176 6.3267 0.5310 38 1 8.1413 6.7197 0.3243 39 1 6.9593 7.2263 -0.9062 40 1 5.3721 -0.0132 -0.0025 41 1 4.1698 -2.1401 -0.0031 42 1 2.0072 -5.5449 -0.7524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168457075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:43 Heat of formation + Delta-G solvation = 0.602142 kcal Electronic energy + Delta-G solvation = -20885.816271 eV Core-core repulsion = 17831.368613 eV Total energy + Delta-G solvation = -3054.447658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38792 -38.33936 -35.39782 -33.15793 -32.46879 -31.30582 -30.63216 -28.92081 -27.87992 -26.69941 -25.46956 -23.55368 -21.88586 -21.08545 -19.66219 -19.13217 -17.31154 -16.70332 -16.42679 -16.14467 -15.29690 -14.86123 -14.42937 -14.21085 -13.80384 -13.43210 -13.31745 -13.08816 -12.70102 -12.54552 -12.41122 -12.36543 -12.31413 -12.14831 -11.94617 -11.65261 -11.38446 -11.08308 -10.96251 -10.70350 -10.65134 -10.56094 -10.17105 -9.85630 -9.77020 -9.39893 -9.10896 -8.60624 -7.54983 -6.72804 -6.54559 -4.12054 2.70590 2.85166 3.22762 3.32568 3.45502 3.55378 3.84619 4.14353 4.27634 4.49754 4.62755 4.66456 4.84762 4.94819 5.12529 5.19978 5.24791 5.37029 5.43993 5.52897 5.58572 5.60487 5.76515 5.86753 5.93706 6.03675 6.07596 6.10842 6.26444 6.35344 6.48331 6.66211 6.70853 6.92891 7.00648 7.18378 7.30768 7.52450 7.68972 7.96254 8.14019 8.35079 8.53061 8.60951 8.89453 9.03533 10.31274 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027544 B = 0.003865 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.317444 B = 7242.957355 C = 7908.132112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.138 4.138 3 C -0.145 4.145 4 C 0.097 3.903 5 N -0.758 5.758 6 C 0.139 3.861 7 C 0.050 3.950 8 H 0.092 0.908 9 C -0.172 4.172 10 C 0.074 3.926 11 C -0.144 4.144 12 C -0.156 4.156 13 O -0.351 6.351 14 C -0.149 4.149 15 C -0.195 4.195 16 C 0.060 3.940 17 C -0.451 4.451 18 H 0.089 0.911 19 C 0.083 3.917 20 N -0.825 5.825 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.246 1.246 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.388 0.612 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.073 17.276 0.036 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C -0.167 4.167 4 C 0.000 4.000 5 N -0.394 5.394 6 C 0.013 3.987 7 C -0.008 4.008 8 H 0.110 0.890 9 C -0.210 4.210 10 C 0.034 3.966 11 C -0.202 4.202 12 C -0.213 4.213 13 O -0.271 6.271 14 C -0.172 4.172 15 C -0.215 4.215 16 C 0.057 3.943 17 C -0.481 4.481 18 H 0.107 0.893 19 C -0.133 4.133 20 N -0.452 5.452 21 Si 0.733 3.267 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.169 1.169 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.220 0.780 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.017 16.898 -0.216 20.736 hybrid contribution 0.610 0.191 -0.419 0.764 sum 12.627 17.090 -0.635 21.258 Atomic orbital electron populations 1.20470 0.93008 1.00961 1.00184 1.19341 0.94590 0.92300 1.07800 1.19807 0.91541 0.96781 1.08540 1.17285 0.90682 0.85094 1.06954 1.43777 1.03168 1.05329 1.87095 1.21213 0.83032 0.93317 1.01105 1.23451 0.95249 0.95050 0.87082 0.89016 1.24491 0.96577 0.99011 1.00914 1.22468 0.86120 0.93035 0.94950 1.21835 0.98095 1.03048 0.97174 1.22024 1.02613 0.96111 1.00561 1.90043 1.43275 1.62300 1.31464 1.19925 0.97195 0.91765 1.08272 1.20605 0.94657 0.95852 1.10371 1.17509 0.91030 0.92794 0.92984 1.19255 1.05424 0.91418 1.31995 0.89334 1.26038 0.96517 0.94347 0.96355 1.69738 1.39655 0.98977 1.36811 0.86414 0.80646 0.79446 0.80242 1.20096 1.22227 1.16934 0.93516 0.94180 0.91395 0.88906 0.77965 0.91992 0.92569 0.90054 0.88040 0.92004 0.91128 0.91451 0.91705 0.91092 0.91536 0.89049 0.88268 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.85 9.40 36.00 0.34 -1.51 16 2 C -0.14 -3.27 5.90 -104.31 -0.62 -3.89 16 3 C -0.14 -3.13 9.46 -39.77 -0.38 -3.51 16 4 C 0.10 2.05 6.67 -83.69 -0.56 1.49 16 5 N -0.76 -13.00 5.70 -58.50 -0.33 -13.33 16 6 C 0.14 2.00 4.93 -4.04 -0.02 1.98 16 7 C 0.05 0.57 3.77 -39.30 -0.15 0.42 16 8 H 0.09 0.96 7.11 -51.93 -0.37 0.59 16 9 C -0.17 -1.55 7.31 -26.35 -0.19 -1.74 16 10 C 0.07 0.71 1.69 -103.19 -0.17 0.53 16 11 C -0.14 -1.19 9.43 37.16 0.35 -0.84 16 12 C -0.16 -1.19 9.27 37.16 0.34 -0.85 16 13 O -0.35 -4.70 12.21 -35.23 -0.43 -5.13 16 14 C -0.15 -3.36 9.23 -39.77 -0.37 -3.73 16 15 C -0.20 -4.87 7.10 -39.27 -0.28 -5.15 16 16 C 0.06 1.57 5.10 -106.79 -0.54 1.03 16 17 C -0.45 -12.49 8.51 -37.87 -0.32 -12.81 16 18 H 0.09 2.55 7.23 -52.49 -0.38 2.17 16 19 C 0.08 2.27 5.40 -17.34 -0.09 2.18 16 20 N -0.83 -22.94 13.93 55.54 0.77 -22.17 16 21 Si 0.90 21.81 24.51 -169.99 -4.17 17.65 16 22 H -0.27 -6.42 6.71 56.52 0.38 -6.04 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.25 -6.13 6.85 56.52 0.39 -5.74 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.07 1.47 6.85 -51.93 -0.36 1.12 16 28 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.39 6.07 8.47 -40.82 -0.35 5.73 16 30 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 31 H 0.06 0.88 7.92 -51.93 -0.41 0.47 16 32 H 0.08 0.58 8.11 -51.92 -0.42 0.16 16 33 H 0.10 0.90 8.12 -51.93 -0.42 0.48 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.51 6.87 -51.93 -0.36 0.15 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.09 1.84 6.68 -52.49 -0.35 1.49 16 41 H 0.10 2.49 4.76 -52.49 -0.25 2.24 16 42 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -29.88 333.54 -8.41 -38.29 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.62 Total: 6.05 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.66 Total: -26.39 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.44 Total: -35.50 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.43 Total: -5.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.17 Total: 17.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.88 -8.41 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168457075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.894 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds