Wall clock time and date at job start Mon Mar 30 2020 02:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36350 * 120.08255 * 2 1 4 4 C 1.39549 * 120.16624 * 180.02562 * 3 2 1 5 5 N 1.38849 * 119.84604 * 180.27579 * 4 3 2 6 6 C 1.46496 * 120.00158 * 179.72626 * 5 4 3 7 7 C 1.53006 * 109.47364 * 180.02562 * 6 5 4 8 8 H 1.09000 * 112.67697 * 51.01199 * 7 6 5 9 9 C 1.53367 * 113.39377 * 181.58233 * 7 6 5 10 10 C 1.53363 * 81.25941 * 141.38495 * 9 7 6 11 11 C 1.52998 * 113.39059 * 218.61359 * 10 9 7 12 12 C 1.53000 * 113.42940 * 88.42073 * 10 9 7 13 13 O 1.43345 * 113.39164 * 280.49792 * 7 6 5 14 14 C 1.39593 * 120.30983 * 0.02562 * 4 3 2 15 15 C 1.36316 * 120.16272 * 0.02562 * 14 4 3 16 16 C 1.40869 * 120.08248 * 180.02562 * 2 1 3 17 17 C 1.41142 * 120.15054 * 359.97438 * 16 2 1 18 18 H 1.07999 * 120.00378 * 329.62286 * 17 16 2 19 19 C 1.39871 * 119.99816 * 149.63038 * 17 16 2 20 20 N 1.30897 * 119.99913 * 162.15764 * 19 17 16 21 21 Si 1.86803 * 119.99846 * 342.15991 * 19 17 16 22 22 H 1.48493 * 109.47360 * 95.39125 * 21 19 17 23 23 H 1.48501 * 109.47048 * 215.39372 * 21 19 17 24 24 H 1.48500 * 109.46762 * 335.39230 * 21 19 17 25 25 H 1.09006 * 109.47331 * 269.97341 * 1 2 3 26 26 H 1.08997 * 109.47571 * 29.97313 * 1 2 3 27 27 H 1.09000 * 109.47582 * 149.97996 * 1 2 3 28 28 H 1.08005 * 119.92252 * 0.03063 * 3 2 1 29 29 H 0.97007 * 120.00053 * 359.72925 * 5 4 3 30 30 H 1.09000 * 109.47208 * 300.00157 * 6 5 4 31 31 H 1.08998 * 109.47382 * 60.00279 * 6 5 4 32 32 H 1.09008 * 114.56513 * 254.47868 * 9 7 6 33 33 H 1.08995 * 114.56776 * 28.28802 * 9 7 6 34 34 H 1.09006 * 109.47136 * 178.41849 * 11 10 9 35 35 H 1.08996 * 109.47413 * 298.42263 * 11 10 9 36 36 H 1.08999 * 109.46844 * 58.42210 * 11 10 9 37 37 H 1.08996 * 109.47543 * 301.55757 * 12 10 9 38 38 H 1.08998 * 109.47405 * 61.56718 * 12 10 9 39 39 H 1.09009 * 109.47014 * 181.55716 * 12 10 9 40 40 H 1.07998 * 119.91535 * 179.97438 * 14 4 3 41 41 H 1.07997 * 120.08344 * 180.02562 * 15 14 4 42 42 H 0.97008 * 120.00080 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1798 0.0000 4 6 3.5859 1.1819 -0.0005 5 7 4.2752 2.3872 0.0053 6 6 5.7401 2.3933 0.0108 7 6 6.2442 3.8379 0.0172 8 1 5.7822 4.4407 0.7991 9 6 7.7734 3.9494 -0.0156 10 6 7.4341 5.1252 -0.9400 11 6 8.3937 5.2639 -2.1236 12 6 7.2229 6.4442 -0.1940 13 8 6.2102 4.4583 -1.2747 14 6 4.2922 -0.0222 -0.0016 15 6 3.6221 -1.2093 -0.0027 16 6 2.2131 -1.2189 -0.0005 17 6 1.5123 -2.4441 -0.0005 18 1 0.5440 -2.5125 0.4728 19 6 2.0721 -3.5699 -0.6134 20 7 1.6187 -4.7641 -0.3276 21 14 3.4669 -3.3691 -1.8398 22 1 4.7668 -3.5500 -1.1450 23 1 3.3331 -4.3872 -2.9126 24 1 3.4094 -2.0106 -2.4366 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6505 2.1152 0.0005 29 1 3.7867 3.2253 0.0057 30 1 6.1022 1.8786 0.9007 31 1 6.1090 1.8834 -0.8792 32 1 8.2274 4.2353 0.9333 33 1 8.2780 3.1176 -0.5070 34 1 8.0786 6.0977 -2.7510 35 1 9.4024 5.4482 -1.7539 36 1 8.3836 4.3445 -2.7090 37 1 6.4176 6.3267 0.5310 38 1 8.1413 6.7197 0.3243 39 1 6.9593 7.2263 -0.9062 40 1 5.3721 -0.0132 -0.0025 41 1 4.1698 -2.1401 -0.0031 42 1 2.0072 -5.5449 -0.7524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168457075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:42 Heat of formation + Delta-G solvation = -17.944490 kcal Electronic energy + Delta-G solvation = -20886.620513 eV Core-core repulsion = 17831.368613 eV Total energy + Delta-G solvation = -3055.251900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.20315 -40.10736 -36.96320 -35.01342 -33.34286 -32.98201 -32.05232 -30.27119 -28.50485 -28.24228 -26.82184 -25.31358 -23.39675 -22.42251 -20.87490 -20.33555 -19.25727 -17.98229 -17.54919 -17.10947 -16.85477 -16.38678 -15.66358 -15.63432 -15.13134 -14.79924 -14.59901 -14.36265 -14.32778 -14.02485 -13.86468 -13.63841 -13.20667 -13.16641 -12.96573 -12.77207 -12.76391 -12.58802 -12.49813 -12.47398 -12.00282 -11.80992 -11.62844 -11.36399 -11.24406 -10.98104 -10.67589 -10.37243 -9.35464 -8.74195 -8.28443 -6.13000 0.86448 0.97765 1.27985 1.41923 1.51293 2.18754 2.63124 2.72462 2.92614 3.26387 3.59223 3.79839 3.92143 3.98501 4.13189 4.26144 4.33366 4.33763 4.42242 4.62897 4.68612 4.70952 4.72791 4.78985 4.85862 4.92769 4.96640 4.97029 5.01670 5.08884 5.15109 5.24673 5.29886 5.36194 5.40633 5.44960 5.50258 5.72359 5.84117 6.06496 6.29574 6.46384 6.67956 6.92733 7.01323 7.17815 8.35700 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027544 B = 0.003865 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.317444 B = 7242.957355 C = 7908.132112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.141 4.141 3 C -0.156 4.156 4 C 0.124 3.876 5 N -0.749 5.749 6 C 0.133 3.867 7 C 0.051 3.949 8 H 0.106 0.894 9 C -0.161 4.161 10 C 0.067 3.933 11 C -0.145 4.145 12 C -0.154 4.154 13 O -0.387 6.387 14 C -0.168 4.168 15 C -0.201 4.201 16 C 0.025 3.975 17 C -0.476 4.476 18 H 0.059 0.941 19 C 0.044 3.956 20 N -0.869 5.869 21 Si 0.957 3.043 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.260 1.260 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.124 0.876 29 H 0.398 0.602 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.243 20.530 0.175 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C -0.178 4.178 4 C 0.023 3.977 5 N -0.383 5.383 6 C 0.008 3.992 7 C -0.007 4.007 8 H 0.124 0.876 9 C -0.198 4.198 10 C 0.028 3.972 11 C -0.202 4.202 12 C -0.211 4.211 13 O -0.308 6.308 14 C -0.190 4.190 15 C -0.221 4.221 16 C 0.022 3.978 17 C -0.508 4.508 18 H 0.077 0.923 19 C -0.167 4.167 20 N -0.499 5.499 21 Si 0.783 3.217 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.184 1.184 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.142 0.858 29 H 0.232 0.768 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.212 20.196 -0.073 24.695 hybrid contribution -0.005 -0.504 -0.418 0.655 sum 14.207 19.692 -0.491 24.287 Atomic orbital electron populations 1.20470 0.91426 1.01484 1.00975 1.19755 0.96145 0.92257 1.06153 1.20119 0.92022 0.97329 1.08324 1.17509 0.90939 0.86205 1.03001 1.43920 1.04587 1.04372 1.85417 1.21413 0.81078 0.95774 1.00898 1.23498 0.97111 0.93094 0.87001 0.87598 1.24458 0.94677 0.98713 1.01984 1.22749 0.84935 0.93880 0.95640 1.21867 0.99132 1.02374 0.96822 1.22036 1.03696 0.94945 1.00404 1.90021 1.45157 1.63156 1.32429 1.20138 0.98517 0.91398 1.08957 1.20684 0.94380 0.96667 1.10403 1.17670 0.91811 0.93112 0.95247 1.19226 1.04896 0.93014 1.33634 0.92332 1.26617 0.98525 0.94008 0.97507 1.69774 1.41748 0.99598 1.38760 0.85602 0.78839 0.78609 0.78652 1.19011 1.21013 1.18402 0.92535 0.91090 0.93349 0.85778 0.76752 0.90967 0.93832 0.87555 0.88135 0.91992 0.88873 0.92802 0.91885 0.88900 0.91653 0.86767 0.89046 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.55 9.40 71.23 0.67 -2.88 16 2 C -0.14 -6.59 5.90 -19.66 -0.12 -6.70 16 3 C -0.16 -6.36 9.46 22.15 0.21 -6.15 16 4 C 0.12 4.90 6.67 38.67 0.26 5.16 16 5 N -0.75 -23.22 5.70 -338.99 -1.93 -25.16 16 6 C 0.13 3.44 4.93 86.38 0.43 3.87 16 7 C 0.05 1.01 3.77 22.45 0.08 1.09 16 8 H 0.11 1.81 7.11 -2.39 -0.02 1.79 16 9 C -0.16 -2.32 7.31 30.84 0.23 -2.10 16 10 C 0.07 1.08 1.69 -18.94 -0.03 1.05 16 11 C -0.14 -2.03 9.43 71.98 0.68 -1.35 16 12 C -0.15 -1.83 9.27 71.98 0.67 -1.16 16 13 O -0.39 -9.44 12.21 -148.98 -1.82 -11.26 16 14 C -0.17 -7.25 9.23 22.15 0.20 -7.05 16 15 C -0.20 -10.04 7.10 22.47 0.16 -9.88 16 16 C 0.02 1.31 5.10 -21.27 -0.11 1.20 16 17 C -0.48 -27.62 8.51 23.38 0.20 -27.42 16 18 H 0.06 3.61 7.23 -2.91 -0.02 3.58 16 19 C 0.04 2.51 5.40 85.23 0.46 2.97 16 20 N -0.87 -50.45 13.93 21.82 0.30 -50.14 16 21 Si 0.96 46.01 24.51 68.60 1.68 47.70 16 22 H -0.26 -12.08 6.71 99.48 0.67 -11.41 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.26 -12.89 6.85 99.48 0.68 -12.21 16 25 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 26 H 0.07 2.41 8.08 -2.39 -0.02 2.39 16 27 H 0.05 2.15 6.85 -2.39 -0.02 2.13 16 28 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 29 H 0.40 10.99 8.47 -92.70 -0.79 10.20 16 30 H 0.07 1.76 7.93 -2.39 -0.02 1.74 16 31 H 0.04 1.27 7.92 -2.39 -0.02 1.25 16 32 H 0.11 1.03 8.11 -2.38 -0.02 1.01 16 33 H 0.10 1.48 8.12 -2.39 -0.02 1.47 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.77 6.87 -2.39 -0.02 0.76 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.11 4.34 6.68 -2.91 -0.02 4.32 16 41 H 0.09 4.62 4.76 -2.91 -0.01 4.60 16 42 H 0.29 15.10 8.30 -92.70 -0.77 14.33 16 Total: -1.00 -66.42 333.54 2.38 -64.04 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.16 Total: 24.18 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 3.99 Total: -49.35 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -1.63 Total: -75.30 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.82 Total: -11.26 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.68 Total: 47.70 kcal Total: -66.42 2.38 -64.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168457075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.094 kcal (2) G-P(sol) polarization free energy of solvation -66.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds