Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36359 * 119.91771 * 2 1 4 4 C 1.40870 * 119.83634 * 180.02562 * 3 2 1 5 5 C 1.41143 * 120.15410 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00273 * 330.12901 * 5 4 3 7 7 C 1.39869 * 119.99611 * 150.12829 * 5 4 3 8 8 N 1.30910 * 119.99494 * 161.73003 * 7 5 4 9 9 Si 1.86800 * 120.00315 * 341.72938 * 7 5 4 10 10 H 1.48491 * 109.47167 * 95.41490 * 9 7 5 11 11 H 1.48504 * 109.46852 * 215.41996 * 9 7 5 12 12 H 1.48498 * 109.46943 * 335.41682 * 9 7 5 13 13 C 1.40899 * 119.69085 * 359.97438 * 4 3 2 14 14 C 1.36327 * 119.83585 * 359.74304 * 13 4 3 15 15 C 1.39544 * 119.92343 * 180.02562 * 2 1 3 16 16 N 1.38861 * 119.84143 * 359.96128 * 15 2 1 17 17 C 1.46495 * 120.00357 * 180.02562 * 16 15 2 18 18 C 1.52996 * 109.47197 * 179.97438 * 17 16 15 19 19 H 1.09000 * 113.03268 * 48.02241 * 18 17 16 20 20 C 1.54037 * 113.86267 * 179.97438 * 18 17 16 21 21 C 1.54034 * 85.82172 * 136.72667 * 20 18 17 22 22 C 1.53004 * 113.86306 * 91.57038 * 21 20 18 23 23 C 1.52996 * 113.86652 * 223.13951 * 21 20 18 24 24 O 1.44173 * 113.86719 * 275.86906 * 18 17 16 25 25 H 1.08996 * 109.46972 * 269.97750 * 1 2 3 26 26 H 1.09001 * 109.47055 * 29.98238 * 1 2 3 27 27 H 1.09000 * 109.46339 * 149.97787 * 1 2 3 28 28 H 1.08000 * 120.08258 * 0.04447 * 3 2 1 29 29 H 0.96999 * 119.99648 * 179.97438 * 8 7 5 30 30 H 1.08003 * 120.08644 * 180.02562 * 13 4 3 31 31 H 1.08002 * 119.92136 * 180.24618 * 14 13 4 32 32 H 0.97003 * 119.99736 * 359.72031 * 16 15 2 33 33 H 1.09002 * 109.47085 * 299.99818 * 17 16 15 34 34 H 1.09001 * 109.47169 * 59.99347 * 17 16 15 35 35 H 1.09007 * 113.81674 * 250.95372 * 20 18 17 36 36 H 1.08994 * 113.81957 * 22.37710 * 20 18 17 37 37 H 1.08998 * 109.47456 * 59.99963 * 22 21 20 38 38 H 1.09003 * 109.46719 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46587 * 299.99487 * 22 21 20 40 40 H 1.09005 * 109.46950 * 59.99939 * 23 21 20 41 41 H 1.08991 * 109.47455 * 179.97438 * 23 21 20 42 42 H 1.09002 * 109.47244 * 300.00802 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1799 -0.0005 5 6 4.3065 2.3993 -0.0011 6 1 3.8776 3.2742 -0.4669 7 6 5.5664 2.4746 0.6017 8 7 6.3749 3.4612 0.3072 9 14 6.0953 1.1676 1.8270 10 1 6.8934 0.1284 1.1285 11 1 6.9200 1.7925 2.8922 12 1 4.8927 0.5430 2.4344 13 6 4.2919 -0.0451 -0.0005 14 6 3.5989 -1.2191 0.0053 15 6 2.2031 -1.2094 -0.0005 16 7 1.5039 -2.4091 -0.0003 17 6 2.2310 -3.6809 -0.0003 18 6 1.2320 -4.8396 0.0007 19 1 0.4450 -4.7248 -0.7446 20 6 1.8920 -6.2314 0.0002 21 6 0.8342 -6.6092 1.0542 22 6 -0.4435 -7.2073 0.4621 23 6 1.3897 -7.4233 2.2245 24 8 0.7498 -5.1930 1.3126 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3632 -0.8898 -0.5142 28 1 1.6471 2.1172 0.0007 29 1 7.2485 3.5137 0.7255 30 1 5.3719 -0.0541 -0.0005 31 1 4.1312 -2.1588 0.0093 32 1 0.5338 -2.4051 0.0044 33 1 2.8573 -3.7413 -0.8904 34 1 2.8577 -3.7411 0.8895 35 1 1.7857 -6.7686 -0.9424 36 1 2.9141 -6.2341 0.3788 37 1 -0.1983 -8.1152 -0.0890 38 1 -1.1391 -7.4468 1.2665 39 1 -0.9036 -6.4855 -0.2128 40 1 2.1618 -6.8467 2.7341 41 1 0.5851 -7.6499 2.9238 42 1 1.8184 -8.3527 1.8496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168459586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = -1.721063 kcal Electronic energy + Delta-G solvation = -20942.627122 eV Core-core repulsion = 17888.078723 eV Total energy + Delta-G solvation = -3054.548399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93191 -38.44997 -35.22926 -33.33090 -32.41368 -31.75779 -30.30314 -28.83454 -27.84745 -26.22220 -26.19472 -23.60898 -22.11609 -20.33947 -19.96415 -19.44368 -17.06999 -16.66161 -16.52990 -16.16080 -15.43971 -14.87286 -14.61777 -14.16474 -13.57194 -13.44237 -13.25109 -13.07334 -12.84291 -12.54360 -12.44132 -12.42184 -12.41023 -12.10540 -12.01918 -11.72722 -11.62457 -11.37163 -10.88804 -10.67336 -10.62128 -10.48056 -10.16076 -9.84838 -9.79332 -9.45452 -9.15824 -8.66076 -7.58580 -6.73071 -6.52662 -4.13051 2.70721 2.82767 3.22477 3.32848 3.33681 3.45253 3.91428 4.14310 4.27552 4.53001 4.62404 4.64912 4.83611 4.93695 5.11917 5.21990 5.26050 5.36464 5.44123 5.52521 5.59754 5.62711 5.75491 5.79300 5.86616 5.90829 5.98341 6.12997 6.13534 6.23030 6.34157 6.38701 6.56272 6.72621 7.00213 7.19124 7.30022 7.49083 7.66978 7.98660 8.10234 8.33006 8.52767 8.60411 8.88685 9.03093 10.31473 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.003977 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.758689 B = 7039.651845 C = 7755.397283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.119 4.119 3 C -0.166 4.166 4 C 0.061 3.939 5 C -0.455 4.455 6 H 0.086 0.914 7 C 0.083 3.917 8 N -0.826 5.826 9 Si 0.907 3.093 10 H -0.274 1.274 11 H -0.294 1.294 12 H -0.246 1.246 13 C -0.200 4.200 14 C -0.144 4.144 15 C 0.097 3.903 16 N -0.757 5.757 17 C 0.141 3.859 18 C 0.055 3.945 19 H 0.093 0.907 20 C -0.171 4.171 21 C 0.078 3.922 22 C -0.152 4.152 23 C -0.142 4.142 24 O -0.364 6.364 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.101 0.899 29 H 0.280 0.720 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.388 0.612 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 -20.019 0.239 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.186 4.186 4 C 0.058 3.942 5 C -0.485 4.485 6 H 0.104 0.896 7 C -0.133 4.133 8 N -0.452 5.452 9 Si 0.734 3.266 10 H -0.201 1.201 11 H -0.222 1.222 12 H -0.170 1.170 13 C -0.219 4.219 14 C -0.166 4.166 15 C 0.000 4.000 16 N -0.394 5.394 17 C 0.015 3.985 18 C -0.003 4.003 19 H 0.110 0.890 20 C -0.209 4.209 21 C 0.039 3.961 22 C -0.209 4.209 23 C -0.199 4.199 24 O -0.284 6.284 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.223 0.777 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.037 -19.796 0.474 21.766 hybrid contribution 0.202 -0.545 0.398 0.704 sum -8.835 -20.341 0.872 22.194 Atomic orbital electron populations 1.20526 0.93526 1.00778 1.00631 1.18796 0.93858 0.92242 1.07392 1.20514 0.93901 0.95243 1.08892 1.17615 0.91686 0.92667 0.92245 1.19260 0.99884 0.96728 1.32660 0.89644 1.26038 0.95079 0.95848 0.96303 1.69748 1.07654 1.30986 1.36821 0.86388 0.79600 0.80355 0.80214 1.20065 1.22207 1.16955 1.20622 0.97974 0.92564 1.10775 1.19930 0.91816 0.97113 1.07715 1.17091 0.90661 0.84569 1.07669 1.43862 1.06817 1.01749 1.87006 1.21151 0.93528 0.82665 1.01155 1.23628 0.95856 0.94657 0.86188 0.88979 1.24809 1.00623 0.95540 0.99907 1.22704 0.94529 0.83955 0.94957 1.21954 0.96492 1.01146 1.01347 1.21786 1.01547 0.99432 0.97152 1.89875 1.88545 1.18927 1.31004 0.92787 0.92479 0.93434 0.88129 0.90983 0.88302 0.88945 0.77720 0.91864 0.92472 0.90759 0.88453 0.91119 0.91571 0.91777 0.91360 0.91894 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.55 36.00 0.34 -1.30 16 2 C -0.12 -2.54 5.86 -104.81 -0.61 -3.15 16 3 C -0.17 -3.96 9.37 -39.26 -0.37 -4.32 16 4 C 0.06 1.61 5.10 -106.79 -0.55 1.07 16 5 C -0.46 -12.86 9.55 -37.87 -0.36 -13.22 16 6 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 7 C 0.08 2.29 5.40 -17.33 -0.09 2.20 16 8 N -0.83 -23.18 13.93 55.54 0.77 -22.40 16 9 Si 0.91 21.92 24.51 -169.99 -4.17 17.75 16 10 H -0.27 -6.42 6.70 56.52 0.38 -6.04 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.25 -6.13 6.87 56.52 0.39 -5.75 16 13 C -0.20 -4.99 7.11 -39.26 -0.28 -5.27 16 14 C -0.14 -3.22 9.23 -39.77 -0.37 -3.58 16 15 C 0.10 2.05 6.65 -83.69 -0.56 1.49 16 16 N -0.76 -12.89 5.60 -58.50 -0.33 -13.22 16 17 C 0.14 2.02 4.97 -4.05 -0.02 2.00 16 18 C 0.05 0.64 4.17 -26.28 -0.11 0.53 16 19 H 0.09 0.97 7.84 -51.93 -0.41 0.57 16 20 C -0.17 -1.57 7.11 -25.65 -0.18 -1.75 16 21 C 0.08 0.75 1.82 -90.17 -0.16 0.59 16 22 C -0.15 -1.16 9.37 37.16 0.35 -0.82 16 23 C -0.14 -1.17 9.49 37.16 0.35 -0.82 16 24 O -0.36 -4.87 11.98 -35.23 -0.42 -5.29 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 28 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 29 H 0.28 7.16 8.30 -40.82 -0.34 6.82 16 30 H 0.10 2.49 4.73 -52.48 -0.25 2.24 16 31 H 0.09 1.85 6.68 -52.49 -0.35 1.50 16 32 H 0.39 6.06 6.43 -40.82 -0.26 5.80 16 33 H 0.06 0.88 7.94 -51.93 -0.41 0.46 16 34 H 0.06 0.90 7.92 -51.93 -0.41 0.49 16 35 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.51 7.58 -51.93 -0.39 0.11 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -30.21 334.59 -8.35 -38.56 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.64 Total: 5.92 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.62 Total: -26.36 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.45 Total: -35.62 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.42 Total: -5.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.17 Total: 17.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.21 -8.35 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168459586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.838 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds