Wall clock time and date at job start Mon Mar 30 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36359 * 119.91771 * 2 1 4 4 C 1.40870 * 119.83634 * 180.02562 * 3 2 1 5 5 C 1.41143 * 120.15410 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00273 * 330.12901 * 5 4 3 7 7 C 1.39869 * 119.99611 * 150.12829 * 5 4 3 8 8 N 1.30910 * 119.99494 * 161.73003 * 7 5 4 9 9 Si 1.86800 * 120.00315 * 341.72938 * 7 5 4 10 10 H 1.48491 * 109.47167 * 95.41490 * 9 7 5 11 11 H 1.48504 * 109.46852 * 215.41996 * 9 7 5 12 12 H 1.48498 * 109.46943 * 335.41682 * 9 7 5 13 13 C 1.40899 * 119.69085 * 359.97438 * 4 3 2 14 14 C 1.36327 * 119.83585 * 359.74304 * 13 4 3 15 15 C 1.39544 * 119.92343 * 180.02562 * 2 1 3 16 16 N 1.38861 * 119.84143 * 359.96128 * 15 2 1 17 17 C 1.46495 * 120.00357 * 180.02562 * 16 15 2 18 18 C 1.52996 * 109.47197 * 179.97438 * 17 16 15 19 19 H 1.09000 * 113.03268 * 48.02241 * 18 17 16 20 20 C 1.54037 * 113.86267 * 179.97438 * 18 17 16 21 21 C 1.54034 * 85.82172 * 136.72667 * 20 18 17 22 22 C 1.53004 * 113.86306 * 91.57038 * 21 20 18 23 23 C 1.52996 * 113.86652 * 223.13951 * 21 20 18 24 24 O 1.44173 * 113.86719 * 275.86906 * 18 17 16 25 25 H 1.08996 * 109.46972 * 269.97750 * 1 2 3 26 26 H 1.09001 * 109.47055 * 29.98238 * 1 2 3 27 27 H 1.09000 * 109.46339 * 149.97787 * 1 2 3 28 28 H 1.08000 * 120.08258 * 0.04447 * 3 2 1 29 29 H 0.96999 * 119.99648 * 179.97438 * 8 7 5 30 30 H 1.08003 * 120.08644 * 180.02562 * 13 4 3 31 31 H 1.08002 * 119.92136 * 180.24618 * 14 13 4 32 32 H 0.97003 * 119.99736 * 359.72031 * 16 15 2 33 33 H 1.09002 * 109.47085 * 299.99818 * 17 16 15 34 34 H 1.09001 * 109.47169 * 59.99347 * 17 16 15 35 35 H 1.09007 * 113.81674 * 250.95372 * 20 18 17 36 36 H 1.08994 * 113.81957 * 22.37710 * 20 18 17 37 37 H 1.08998 * 109.47456 * 59.99963 * 22 21 20 38 38 H 1.09003 * 109.46719 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46587 * 299.99487 * 22 21 20 40 40 H 1.09005 * 109.46950 * 59.99939 * 23 21 20 41 41 H 1.08991 * 109.47455 * 179.97438 * 23 21 20 42 42 H 1.09002 * 109.47244 * 300.00802 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1799 -0.0005 5 6 4.3065 2.3993 -0.0011 6 1 3.8776 3.2742 -0.4669 7 6 5.5664 2.4746 0.6017 8 7 6.3749 3.4612 0.3072 9 14 6.0953 1.1676 1.8270 10 1 6.8934 0.1284 1.1285 11 1 6.9200 1.7925 2.8922 12 1 4.8927 0.5430 2.4344 13 6 4.2919 -0.0451 -0.0005 14 6 3.5989 -1.2191 0.0053 15 6 2.2031 -1.2094 -0.0005 16 7 1.5039 -2.4091 -0.0003 17 6 2.2310 -3.6809 -0.0003 18 6 1.2320 -4.8396 0.0007 19 1 0.4450 -4.7248 -0.7446 20 6 1.8920 -6.2314 0.0002 21 6 0.8342 -6.6092 1.0542 22 6 -0.4435 -7.2073 0.4621 23 6 1.3897 -7.4233 2.2245 24 8 0.7498 -5.1930 1.3126 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3632 -0.8898 -0.5142 28 1 1.6471 2.1172 0.0007 29 1 7.2485 3.5137 0.7255 30 1 5.3719 -0.0541 -0.0005 31 1 4.1312 -2.1588 0.0093 32 1 0.5338 -2.4051 0.0044 33 1 2.8573 -3.7413 -0.8904 34 1 2.8577 -3.7411 0.8895 35 1 1.7857 -6.7686 -0.9424 36 1 2.9141 -6.2341 0.3788 37 1 -0.1983 -8.1152 -0.0890 38 1 -1.1391 -7.4468 1.2665 39 1 -0.9036 -6.4855 -0.2128 40 1 2.1618 -6.8467 2.7341 41 1 0.5851 -7.6499 2.9238 42 1 1.8184 -8.3527 1.8496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168459586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:22 Heat of formation + Delta-G solvation = -20.471176 kcal Electronic energy + Delta-G solvation = -20943.440188 eV Core-core repulsion = 17888.078723 eV Total energy + Delta-G solvation = -3055.361465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75446 -40.18813 -36.84368 -35.09106 -33.55492 -33.17619 -31.69423 -30.24394 -28.43591 -27.86637 -27.40965 -25.33358 -23.28671 -21.98980 -21.67062 -20.18142 -18.96059 -18.21766 -17.49358 -17.21110 -16.87675 -16.42707 -15.77838 -15.34194 -15.13721 -14.78814 -14.62933 -14.35838 -14.26424 -13.99864 -13.82699 -13.70762 -13.40146 -13.17161 -13.10221 -12.91086 -12.72465 -12.55870 -12.45988 -12.36891 -11.98835 -11.83690 -11.59767 -11.38604 -11.27050 -11.00981 -10.61239 -10.45870 -9.39971 -8.77565 -8.26108 -6.17974 0.85627 0.95210 1.26961 1.41920 1.50726 2.17621 2.49970 2.68945 2.83599 3.34056 3.57315 3.79702 3.90915 4.01364 4.12403 4.22575 4.25347 4.36781 4.42227 4.58987 4.64775 4.70291 4.71862 4.73894 4.85665 4.89490 4.92635 4.96851 5.00243 5.03908 5.09927 5.18031 5.33155 5.36653 5.42299 5.48965 5.53982 5.66299 5.84370 6.01004 6.25540 6.43480 6.64728 6.89526 6.97451 7.16986 8.33163 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.003977 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.758689 B = 7039.651845 C = 7755.397283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.129 4.129 3 C -0.172 4.172 4 C 0.029 3.971 5 C -0.489 4.489 6 H 0.050 0.950 7 C 0.044 3.956 8 N -0.870 5.870 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.259 1.259 13 C -0.206 4.206 14 C -0.159 4.159 15 C 0.122 3.878 16 N -0.747 5.747 17 C 0.135 3.865 18 C 0.055 3.945 19 H 0.107 0.893 20 C -0.161 4.161 21 C 0.072 3.928 22 C -0.150 4.150 23 C -0.143 4.143 24 O -0.399 6.399 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.288 0.712 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.399 0.601 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 -23.962 0.264 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C -0.192 4.192 4 C 0.026 3.974 5 C -0.520 4.520 6 H 0.068 0.932 7 C -0.167 4.167 8 N -0.499 5.499 9 Si 0.788 3.212 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.183 1.183 13 C -0.226 4.226 14 C -0.181 4.181 15 C 0.022 3.978 16 N -0.383 5.383 17 C 0.010 3.990 18 C -0.003 4.003 19 H 0.124 0.876 20 C -0.199 4.199 21 C 0.033 3.967 22 C -0.207 4.207 23 C -0.200 4.200 24 O -0.319 6.319 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.235 0.765 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.700 -23.781 0.492 26.082 hybrid contribution 0.469 0.479 0.346 0.754 sum -10.231 -23.302 0.838 25.463 Atomic orbital electron populations 1.20562 0.89950 1.02568 1.01963 1.19241 0.96553 0.91333 1.06149 1.20706 0.93305 0.96656 1.08530 1.17729 0.92868 0.92459 0.94317 1.19258 1.01277 0.96693 1.34819 0.93222 1.26674 0.94899 0.97735 0.97420 1.69784 1.08510 1.32907 1.38677 0.85525 0.78854 0.78396 0.78444 1.18666 1.20783 1.18318 1.20672 0.97920 0.93025 1.10981 1.20177 0.92702 0.97246 1.07990 1.17317 0.90576 0.86085 1.03869 1.43991 1.07480 1.01452 1.85363 1.21343 0.94315 0.82287 1.01015 1.23629 0.95968 0.94603 0.86103 0.87561 1.24743 1.00340 0.93845 1.00936 1.23006 0.95629 0.82522 0.95554 1.21969 0.95498 1.01818 1.01438 1.21825 1.01257 0.99989 0.96910 1.89850 1.88778 1.21365 1.31935 0.91525 0.91479 0.90985 0.88054 0.90241 0.88928 0.86426 0.76524 0.90771 0.93681 0.88422 0.88469 0.88974 0.91516 0.92062 0.92821 0.91683 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.84 9.55 71.24 0.68 -2.16 16 2 C -0.13 -5.24 5.86 -19.99 -0.12 -5.36 16 3 C -0.17 -8.29 9.37 22.48 0.21 -8.08 16 4 C 0.03 1.59 5.10 -21.27 -0.11 1.48 16 5 C -0.49 -29.24 9.55 23.38 0.22 -29.02 16 6 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 7 C 0.04 2.51 5.40 85.23 0.46 2.97 16 8 N -0.87 -51.09 13.93 21.82 0.30 -50.79 16 9 Si 0.96 46.22 24.51 68.60 1.68 47.90 16 10 H -0.26 -11.82 6.70 99.48 0.67 -11.15 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.26 -12.81 6.87 99.48 0.68 -12.12 16 13 C -0.21 -10.32 7.11 22.48 0.16 -10.16 16 14 C -0.16 -6.84 9.23 22.15 0.20 -6.63 16 15 C 0.12 4.80 6.65 38.67 0.26 5.06 16 16 N -0.75 -22.86 5.60 -339.00 -1.90 -24.76 16 17 C 0.14 3.45 4.97 86.38 0.43 3.88 16 18 C 0.05 1.08 4.17 30.89 0.13 1.21 16 19 H 0.11 1.81 7.84 -2.39 -0.02 1.79 16 20 C -0.16 -2.36 7.11 31.29 0.22 -2.14 16 21 C 0.07 1.15 1.82 -10.50 -0.02 1.13 16 22 C -0.15 -1.77 9.37 71.98 0.67 -1.09 16 23 C -0.14 -1.98 9.49 71.98 0.68 -1.30 16 24 O -0.40 -9.61 11.98 -148.98 -1.78 -11.39 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 27 H 0.07 1.82 6.54 -2.39 -0.02 1.81 16 28 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 29 H 0.29 15.26 8.30 -92.71 -0.77 14.50 16 30 H 0.09 4.68 4.73 -2.91 -0.01 4.66 16 31 H 0.12 4.41 6.68 -2.91 -0.02 4.39 16 32 H 0.40 10.81 6.43 -92.71 -0.60 10.21 16 33 H 0.07 1.78 7.94 -2.39 -0.02 1.76 16 34 H 0.04 1.29 7.92 -2.39 -0.02 1.27 16 35 H 0.10 0.99 8.10 -2.38 -0.02 0.98 16 36 H 0.10 1.44 8.05 -2.39 -0.02 1.42 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.76 7.58 -2.39 -0.02 0.74 16 40 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -68.05 334.59 2.74 -65.31 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.35 Total: 23.91 kcal Atomic # 6 Polarization: -54.28 SS G_CDS: 4.09 Total: -50.19 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -1.59 Total: -75.54 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -1.78 Total: -11.39 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.68 Total: 47.90 kcal Total: -68.05 2.74 -65.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168459586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.842 kcal (2) G-P(sol) polarization free energy of solvation -68.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds