Wall clock time and date at job start Mon Mar 30 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48502 * 109.47106 * 239.99996 * 3 2 1 5 5 H 1.48498 * 109.46896 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47421 * 119.99847 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99740 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.35997 * 117.00203 * 179.97438 * 10 9 7 12 12 C 1.38703 * 119.98339 * 180.02562 * 11 10 9 13 13 C 1.38107 * 120.02094 * 180.02562 * 12 11 10 14 14 C 1.38859 * 119.98108 * 359.97438 * 13 12 11 15 15 N 1.39938 * 120.02254 * 180.02562 * 14 13 12 16 16 C 1.46493 * 120.00691 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47496 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.46991 * 179.97438 * 17 16 15 19 19 C 1.53786 * 113.61503 * 85.86302 * 18 17 16 20 20 C 1.54049 * 86.98426 * 140.01654 * 19 18 17 21 21 C 1.53781 * 113.61337 * 183.47096 * 18 17 16 22 22 C 1.38864 * 119.96274 * 0.26591 * 14 13 12 23 23 C 1.38111 * 119.97751 * 359.48063 * 22 14 13 24 24 H 0.97006 * 120.00070 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.47146 * 60.00062 * 9 7 2 26 26 H 1.09004 * 109.47328 * 299.99810 * 9 7 2 27 27 H 1.08000 * 119.98572 * 0.02562 * 12 11 10 28 28 H 1.08003 * 120.01245 * 179.97438 * 13 12 11 29 29 H 0.97010 * 119.99560 * 359.97438 * 15 14 13 30 30 H 1.09000 * 109.46954 * 59.99586 * 16 15 14 31 31 H 1.09006 * 109.46803 * 299.99877 * 16 15 14 32 32 H 1.09000 * 109.47147 * 59.99962 * 17 16 15 33 33 H 1.08997 * 109.47118 * 299.99783 * 17 16 15 34 34 H 1.09002 * 112.85017 * 314.66684 * 18 17 16 35 35 H 1.08992 * 113.61675 * 254.61398 * 19 18 17 36 36 H 1.09000 * 113.60973 * 25.51686 * 19 18 17 37 37 H 1.09005 * 113.62125 * 220.02158 * 20 19 18 38 38 H 1.09003 * 113.61268 * 89.11946 * 20 19 18 39 39 H 1.08999 * 113.61567 * 334.48261 * 21 18 17 40 40 H 1.09000 * 113.61379 * 105.30384 * 21 18 17 41 41 H 1.08000 * 120.01063 * 179.71060 * 22 14 13 42 42 H 1.07997 * 119.99043 * 180.25684 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.6597 -4.8421 0.0011 12 6 2.5049 -5.9418 0.0016 13 6 1.9778 -7.2183 0.0017 14 6 0.6013 -7.4007 0.0016 15 7 0.0663 -8.6938 0.0022 16 6 -1.3860 -8.8858 0.0028 17 6 -1.7026 -10.3827 0.0026 18 6 -3.2195 -10.5830 0.0039 19 6 -3.8447 -10.5626 -1.4010 20 6 -4.7486 -11.7164 -0.9268 21 6 -3.6459 -12.0581 0.0892 22 6 -0.2443 -6.2992 -0.0040 23 6 0.2845 -5.0233 0.0013 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8898 26 1 0.6239 -2.5567 0.8903 27 1 3.5755 -5.7997 0.0021 28 1 2.6361 -8.0746 0.0017 29 1 0.6572 -9.4631 0.0022 30 1 -1.8138 -8.4242 -0.8872 31 1 -1.8132 -8.4237 0.8928 32 1 -1.2748 -10.8446 0.8924 33 1 -1.2755 -10.8443 -0.8876 34 1 -3.7310 -9.9386 0.7188 35 1 -4.3876 -9.6442 -1.6240 36 1 -3.1510 -10.8482 -2.1918 37 1 -4.9024 -12.4888 -1.6805 38 1 -5.6782 -11.3819 -0.4663 39 1 -2.8980 -12.7517 -0.2950 40 1 -4.0271 -12.3465 1.0688 41 1 -1.3150 -6.4401 -0.0087 42 1 -0.3729 -4.1665 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168889484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:07 Heat of formation + Delta-G solvation = -10.277768 kcal Electronic energy + Delta-G solvation = -19895.898186 eV Core-core repulsion = 16840.978740 eV Total energy + Delta-G solvation = -3054.919446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.52528 -39.13410 -37.25104 -34.93534 -32.83168 -31.24054 -30.49938 -28.16065 -26.84403 -25.97028 -24.74703 -23.46195 -22.36943 -21.02514 -20.78248 -19.70710 -17.46923 -16.56641 -16.42963 -15.95045 -15.60097 -15.12800 -14.77999 -14.60391 -14.39206 -14.02000 -13.83877 -13.06178 -13.03146 -12.78381 -12.71698 -12.54465 -12.14199 -11.96992 -11.63025 -11.47287 -11.40279 -10.98745 -10.95152 -10.90034 -10.50054 -10.46315 -10.38425 -10.26573 -10.07164 -9.19114 -8.97793 -8.52986 -8.40757 -6.57919 -6.18784 -4.21825 1.85279 2.22992 3.29642 3.32150 3.35910 3.57670 4.22609 4.25794 4.29946 4.40724 4.43162 4.51876 4.71657 4.87912 5.08364 5.14928 5.18118 5.28470 5.36828 5.39924 5.41114 5.44209 5.51978 5.57375 5.63546 5.78500 5.84543 5.88300 5.97329 6.00088 6.07930 6.17993 6.46954 6.65561 6.73401 6.91296 7.13788 7.22546 7.25873 7.64390 7.75285 7.96724 8.05171 8.63435 8.94174 9.43179 10.92557 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031574 B = 0.002614 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.588255 B =10710.474353 C =11472.310338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.069 0.931 9 C 0.195 3.805 10 O -0.323 6.323 11 C 0.102 3.898 12 C -0.124 4.124 13 C -0.156 4.156 14 C 0.156 3.844 15 N -0.759 5.759 16 C 0.131 3.869 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.153 4.153 23 C -0.166 4.166 24 H 0.267 0.733 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.393 0.607 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.115 0.885 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 -23.335 -0.571 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.087 0.913 9 C 0.122 3.878 10 O -0.237 6.237 11 C 0.054 3.946 12 C -0.144 4.144 13 C -0.178 4.178 14 C 0.057 3.943 15 N -0.393 5.393 16 C 0.006 3.994 17 C -0.157 4.157 18 C -0.127 4.127 19 C -0.176 4.176 20 C -0.182 4.182 21 C -0.175 4.175 22 C -0.175 4.175 23 C -0.186 4.186 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.226 0.774 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.879 -23.075 -0.573 24.086 hybrid contribution 0.220 0.662 0.008 0.698 sum -6.659 -22.413 -0.565 23.389 Atomic orbital electron populations 1.69945 1.06118 1.27574 1.49795 1.24936 0.95040 0.99497 0.94820 0.86316 0.79273 0.81506 0.78950 1.19892 1.21053 1.19887 1.20967 0.94214 0.88918 1.51905 0.91268 1.20545 0.88711 0.81987 0.96560 1.86100 1.38614 1.11676 1.87280 1.19059 0.91483 0.86487 0.97568 1.20156 0.99283 0.89985 1.04945 1.20236 0.92663 0.96455 1.08490 1.17578 0.92033 0.84836 0.99902 1.44402 1.05217 1.04201 1.85497 1.21183 0.81764 0.95606 1.00828 1.21732 0.95667 0.95836 1.02432 1.22486 0.94856 0.97234 0.98106 1.23047 0.98952 0.98947 0.96685 1.22862 0.97522 0.98735 0.99057 1.22935 0.98559 0.96385 0.99601 1.20382 0.98521 0.91108 1.07527 1.21254 0.94807 0.97666 1.04841 0.92373 0.96383 0.96373 0.85811 0.86511 0.77378 0.92749 0.92864 0.91399 0.91411 0.88974 0.91361 0.90076 0.91603 0.90238 0.90183 0.91577 0.86715 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -15.31 9.43 -34.44 -0.32 -15.64 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.37 4.49 36.01 0.16 5.53 16 10 O -0.32 -8.20 10.12 -19.73 -0.20 -8.40 16 11 C 0.10 2.20 6.69 -39.24 -0.26 1.94 16 12 C -0.12 -2.26 9.98 -39.46 -0.39 -2.65 16 13 C -0.16 -2.40 9.89 -39.40 -0.39 -2.79 16 14 C 0.16 2.37 6.66 -83.70 -0.56 1.82 16 15 N -0.76 -8.84 5.74 -58.59 -0.34 -9.17 16 16 C 0.13 1.30 4.91 -4.05 -0.02 1.28 16 17 C -0.12 -0.89 5.15 -26.73 -0.14 -1.02 16 18 C -0.11 -0.75 3.64 -89.80 -0.33 -1.08 16 19 C -0.14 -0.97 7.65 -25.77 -0.20 -1.17 16 20 C -0.14 -0.90 8.09 -25.78 -0.21 -1.11 16 21 C -0.14 -0.86 7.64 -25.92 -0.20 -1.06 16 22 C -0.15 -2.59 9.31 -39.40 -0.37 -2.96 16 23 C -0.17 -3.34 9.03 -39.46 -0.36 -3.70 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.52 7.66 -51.92 -0.40 0.12 16 26 H 0.02 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.39 3.80 8.49 -40.82 -0.35 3.45 16 30 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16 31 H 0.05 0.56 7.96 -51.93 -0.41 0.15 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.49 7.88 -51.93 -0.41 0.08 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 1.72 6.73 -52.49 -0.35 1.36 16 42 H 0.13 2.77 6.29 -52.49 -0.33 2.44 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -30.75 345.73 -10.10 -40.85 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.82 Total: 1.60 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -3.67 Total: -21.01 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.40 Total: -34.90 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.20 Total: -8.40 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.75 -10.10 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168889484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.572 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds