Wall clock time and date at job start Mon Mar 30 2020 01:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48502 * 109.47106 * 239.99996 * 3 2 1 5 5 H 1.48498 * 109.46896 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47421 * 119.99847 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99740 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.35997 * 117.00203 * 179.97438 * 10 9 7 12 12 C 1.38703 * 119.98339 * 180.02562 * 11 10 9 13 13 C 1.38107 * 120.02094 * 180.02562 * 12 11 10 14 14 C 1.38859 * 119.98108 * 359.97438 * 13 12 11 15 15 N 1.39938 * 120.02254 * 180.02562 * 14 13 12 16 16 C 1.46493 * 120.00691 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47496 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.46991 * 179.97438 * 17 16 15 19 19 C 1.53786 * 113.61503 * 85.86302 * 18 17 16 20 20 C 1.54049 * 86.98426 * 140.01654 * 19 18 17 21 21 C 1.53781 * 113.61337 * 183.47096 * 18 17 16 22 22 C 1.38864 * 119.96274 * 0.26591 * 14 13 12 23 23 C 1.38111 * 119.97751 * 359.48063 * 22 14 13 24 24 H 0.97006 * 120.00070 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.47146 * 60.00062 * 9 7 2 26 26 H 1.09004 * 109.47328 * 299.99810 * 9 7 2 27 27 H 1.08000 * 119.98572 * 0.02562 * 12 11 10 28 28 H 1.08003 * 120.01245 * 179.97438 * 13 12 11 29 29 H 0.97010 * 119.99560 * 359.97438 * 15 14 13 30 30 H 1.09000 * 109.46954 * 59.99586 * 16 15 14 31 31 H 1.09006 * 109.46803 * 299.99877 * 16 15 14 32 32 H 1.09000 * 109.47147 * 59.99962 * 17 16 15 33 33 H 1.08997 * 109.47118 * 299.99783 * 17 16 15 34 34 H 1.09002 * 112.85017 * 314.66684 * 18 17 16 35 35 H 1.08992 * 113.61675 * 254.61398 * 19 18 17 36 36 H 1.09000 * 113.60973 * 25.51686 * 19 18 17 37 37 H 1.09005 * 113.62125 * 220.02158 * 20 19 18 38 38 H 1.09003 * 113.61268 * 89.11946 * 20 19 18 39 39 H 1.08999 * 113.61567 * 334.48261 * 21 18 17 40 40 H 1.09000 * 113.61379 * 105.30384 * 21 18 17 41 41 H 1.08000 * 120.01063 * 179.71060 * 22 14 13 42 42 H 1.07997 * 119.99043 * 180.25684 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.6597 -4.8421 0.0011 12 6 2.5049 -5.9418 0.0016 13 6 1.9778 -7.2183 0.0017 14 6 0.6013 -7.4007 0.0016 15 7 0.0663 -8.6938 0.0022 16 6 -1.3860 -8.8858 0.0028 17 6 -1.7026 -10.3827 0.0026 18 6 -3.2195 -10.5830 0.0039 19 6 -3.8447 -10.5626 -1.4010 20 6 -4.7486 -11.7164 -0.9268 21 6 -3.6459 -12.0581 0.0892 22 6 -0.2443 -6.2992 -0.0040 23 6 0.2845 -5.0233 0.0013 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8898 26 1 0.6239 -2.5567 0.8903 27 1 3.5755 -5.7997 0.0021 28 1 2.6361 -8.0746 0.0017 29 1 0.6572 -9.4631 0.0022 30 1 -1.8138 -8.4242 -0.8872 31 1 -1.8132 -8.4237 0.8928 32 1 -1.2748 -10.8446 0.8924 33 1 -1.2755 -10.8443 -0.8876 34 1 -3.7310 -9.9386 0.7188 35 1 -4.3876 -9.6442 -1.6240 36 1 -3.1510 -10.8482 -2.1918 37 1 -4.9024 -12.4888 -1.6805 38 1 -5.6782 -11.3819 -0.4663 39 1 -2.8980 -12.7517 -0.2950 40 1 -4.0271 -12.3465 1.0688 41 1 -1.3150 -6.4401 -0.0087 42 1 -0.3729 -4.1665 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168889484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:06 Heat of formation + Delta-G solvation = -27.294601 kcal Electronic energy + Delta-G solvation = -19896.636092 eV Core-core repulsion = 16840.978740 eV Total energy + Delta-G solvation = -3055.657351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87276 -39.88298 -38.74984 -36.15481 -34.97590 -32.23391 -31.92491 -29.97951 -28.33822 -26.50435 -25.64622 -25.35249 -23.50184 -22.30044 -22.05230 -20.24915 -19.16405 -18.43633 -17.91122 -16.90309 -16.61642 -16.45285 -16.34987 -15.83526 -15.76613 -15.24594 -15.15243 -14.48138 -14.16404 -14.01627 -13.66381 -13.46446 -13.28273 -13.27094 -13.15676 -12.90525 -12.82042 -12.37725 -12.24863 -12.17480 -11.85127 -11.75285 -11.42095 -11.27999 -11.02677 -10.98845 -10.75268 -10.26257 -9.88372 -8.38107 -7.94107 -6.52609 0.44454 0.77040 1.38954 1.44478 1.52873 2.29703 2.56220 2.91345 2.94883 2.98139 3.66140 3.76795 3.88298 3.98046 4.00679 4.06104 4.22515 4.38605 4.42894 4.54168 4.54364 4.66664 4.72421 4.77216 4.86813 4.90353 4.93411 5.00534 5.05194 5.07882 5.10397 5.17852 5.22812 5.29981 5.37715 5.44820 5.48316 5.63773 5.65754 5.79693 5.88687 6.42117 6.55681 6.90471 7.00534 7.20509 8.74235 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031574 B = 0.002614 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.588255 B =10710.474353 C =11472.310338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.215 3.785 10 O -0.344 6.344 11 C 0.048 3.952 12 C -0.120 4.120 13 C -0.147 4.147 14 C 0.174 3.826 15 N -0.743 5.743 16 C 0.127 3.873 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.133 4.133 22 C -0.161 4.161 23 C -0.179 4.179 24 H 0.274 0.726 25 H -0.005 1.005 26 H -0.004 1.004 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.408 0.592 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 -25.349 -0.531 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.812 3.188 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.085 0.915 9 C 0.142 3.858 10 O -0.259 6.259 11 C 0.001 3.999 12 C -0.139 4.139 13 C -0.169 4.169 14 C 0.072 3.928 15 N -0.377 5.377 16 C 0.002 3.998 17 C -0.145 4.145 18 C -0.129 4.129 19 C -0.181 4.181 20 C -0.182 4.182 21 C -0.170 4.170 22 C -0.184 4.184 23 C -0.199 4.199 24 H 0.083 0.917 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.154 0.846 28 H 0.177 0.823 29 H 0.244 0.756 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.149 0.851 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.266 -25.167 -0.532 25.941 hybrid contribution -0.077 1.038 -0.010 1.040 sum -6.344 -24.130 -0.543 24.955 Atomic orbital electron populations 1.70062 1.07831 1.29064 1.49623 1.26017 0.96059 1.03505 0.93467 0.85136 0.78044 0.76120 0.79527 1.18833 1.19741 1.18823 1.21324 0.94376 0.90282 1.53524 0.91513 1.20056 0.88470 0.82984 0.94329 1.86007 1.38237 1.12850 1.88758 1.19481 0.92779 0.85743 1.01875 1.20421 0.99655 0.89969 1.03831 1.20621 0.93245 0.96461 1.06583 1.17697 0.92048 0.85842 0.97187 1.44480 1.06367 1.03174 1.83684 1.21320 0.80480 0.97573 1.00393 1.21649 0.95987 0.93718 1.03174 1.22492 0.94504 0.97909 0.97984 1.23082 0.99226 0.99008 0.96781 1.22877 0.97557 0.98533 0.99227 1.22927 0.98542 0.95769 0.99802 1.20489 0.99721 0.90361 1.07823 1.21140 0.94179 0.98382 1.06178 0.91748 0.98688 0.98673 0.84557 0.82286 0.75592 0.93279 0.93259 0.90573 0.90665 0.89339 0.92069 0.89947 0.91104 0.90136 0.89537 0.91205 0.85106 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.99 44.67 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.56 -34.09 9.43 25.60 0.24 -33.85 16 8 H 0.07 3.99 7.81 -2.91 -0.02 3.97 16 9 C 0.22 12.73 4.49 71.24 0.32 13.05 16 10 O -0.34 -18.55 10.12 -93.51 -0.95 -19.50 16 11 C 0.05 2.15 6.69 22.49 0.15 2.30 16 12 C -0.12 -4.27 9.98 22.35 0.22 -4.05 16 13 C -0.15 -4.12 9.89 22.39 0.22 -3.89 16 14 C 0.17 4.92 6.66 38.15 0.25 5.18 16 15 N -0.74 -14.85 5.74 -339.28 -1.95 -16.80 16 16 C 0.13 2.22 4.91 86.38 0.42 2.64 16 17 C -0.11 -1.29 5.15 30.59 0.16 -1.13 16 18 C -0.11 -1.31 3.64 -10.26 -0.04 -1.35 16 19 C -0.14 -1.78 7.65 31.21 0.24 -1.54 16 20 C -0.14 -1.56 8.09 31.21 0.25 -1.31 16 21 C -0.13 -1.35 7.64 31.12 0.24 -1.11 16 22 C -0.16 -5.45 9.31 22.39 0.21 -5.24 16 23 C -0.18 -7.63 9.03 22.35 0.20 -7.43 16 24 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 25 H 0.00 -0.29 7.66 -2.38 -0.02 -0.30 16 26 H 0.00 -0.28 7.66 -2.38 -0.02 -0.29 16 27 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.41 6.08 8.49 -92.70 -0.79 5.29 16 30 H 0.05 0.95 7.94 -2.39 -0.02 0.93 16 31 H 0.05 0.94 7.96 -2.38 -0.02 0.92 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.83 7.88 -2.39 -0.02 0.81 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.00 7.92 -2.39 -0.02 0.98 16 37 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.78 8.10 -2.39 -0.02 0.76 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.13 3.89 6.73 -2.91 -0.02 3.87 16 42 H 0.10 4.89 6.29 -2.91 -0.02 4.87 16 Total: -1.00 -69.21 345.73 3.18 -66.03 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.21 Total: 16.37 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 3.56 Total: -36.76 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -1.66 Total: -72.83 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.95 Total: -19.50 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.21 3.18 -66.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168889484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.739 kcal (2) G-P(sol) polarization free energy of solvation -69.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds