Wall clock time and date at job start Mon Mar 30 2020 02:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36353 * 120.07881 * 2 1 4 4 C 1.39549 * 120.15813 * 180.25810 * 3 2 1 5 5 N 1.38862 * 119.84160 * 179.75826 * 4 3 2 6 6 C 1.46504 * 120.00116 * 179.72051 * 5 4 3 7 7 H 1.09007 * 109.46793 * 325.00201 * 6 5 4 8 8 C 1.52995 * 109.46743 * 84.99775 * 6 5 4 9 9 C 1.53005 * 109.46920 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46885 * 300.00352 * 9 8 6 11 11 C 1.53004 * 109.47544 * 59.99925 * 10 9 8 12 12 H 1.08997 * 109.46544 * 59.99620 * 11 10 9 13 13 O 1.42897 * 109.46998 * 180.02562 * 11 10 9 14 14 C 1.52991 * 109.47084 * 205.00162 * 6 5 4 15 15 C 1.39588 * 120.31849 * 359.47703 * 4 3 2 16 16 C 1.36321 * 120.15498 * 0.25694 * 15 4 3 17 17 C 1.40867 * 120.08181 * 179.73965 * 2 1 3 18 18 C 1.41140 * 120.15724 * 359.97438 * 17 2 1 19 19 H 1.08003 * 119.99751 * 333.68920 * 18 17 2 20 20 C 1.39863 * 120.00045 * 153.69060 * 18 17 2 21 21 N 1.30900 * 119.99906 * 343.79796 * 20 18 17 22 22 Si 1.86805 * 119.99957 * 163.79353 * 20 18 17 23 23 H 1.48501 * 109.46985 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46829 * 120.00223 * 22 20 18 25 25 H 1.48494 * 109.46988 * 240.00120 * 22 20 18 26 26 H 1.09002 * 109.47053 * 270.25861 * 1 2 3 27 27 H 1.08991 * 109.47378 * 30.26193 * 1 2 3 28 28 H 1.09007 * 109.46632 * 150.26523 * 1 2 3 29 29 H 1.07998 * 119.92408 * 359.97438 * 3 2 1 30 30 H 0.97002 * 119.99829 * 359.72390 * 5 4 3 31 31 H 1.08995 * 109.47724 * 299.99925 * 8 6 5 32 32 H 1.08998 * 109.47110 * 60.00787 * 8 6 5 33 33 H 1.08995 * 109.47032 * 59.99935 * 9 8 6 34 34 H 1.09001 * 109.47199 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.47313 * 299.99647 * 10 9 8 36 36 H 1.09002 * 109.47116 * 180.02562 * 10 9 8 37 37 H 0.96697 * 114.00125 * 299.99552 * 13 11 10 38 38 H 1.09000 * 109.47598 * 59.99774 * 14 6 5 39 39 H 1.08998 * 109.47474 * 299.99644 * 14 6 5 40 40 H 1.07995 * 119.91794 * 180.28115 * 15 4 3 41 41 H 1.08006 * 120.08068 * 180.02562 * 16 15 4 42 42 H 0.97007 * 119.99882 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1819 -0.0054 5 7 4.2752 2.3873 -0.0105 6 6 5.7402 2.3934 -0.0100 7 1 6.1069 1.5557 0.5833 8 6 6.2511 2.2635 -1.4463 9 6 7.7812 2.2693 -1.4458 10 6 8.2860 3.5811 -0.8415 11 6 7.7750 3.7110 0.5949 12 1 8.1413 2.8731 1.1879 13 8 8.2461 4.9366 1.1589 14 6 6.2445 3.7055 0.5940 15 6 4.2923 -0.0221 0.0001 16 6 3.6221 -1.2092 0.0056 17 6 2.2131 -1.2189 0.0055 18 6 1.5125 -2.4442 0.0117 19 1 0.5168 -2.4947 0.4269 20 6 2.1077 -3.5927 -0.5200 21 7 3.1559 -3.4869 -1.2969 22 14 1.4070 -5.2778 -0.1211 23 1 0.2297 -5.1258 0.7711 24 1 0.9915 -5.9511 -1.3778 25 1 2.4424 -6.0959 0.5598 26 1 -0.3633 0.0046 1.0277 27 1 -0.3634 0.8875 -0.5178 28 1 -0.3633 -0.8924 -0.5098 29 1 1.6505 2.1152 -0.0004 30 1 3.7867 3.2253 -0.0143 31 1 5.8919 1.3288 -1.8766 32 1 5.8846 3.1012 -2.0395 33 1 8.1474 1.4314 -0.8526 34 1 8.1452 2.1772 -2.4690 35 1 7.9197 4.4191 -1.4346 36 1 9.3760 3.5854 -0.8415 37 1 9.2097 5.0099 1.1912 38 1 5.8805 3.7981 1.6173 39 1 5.8779 4.5432 0.0008 40 1 5.3722 -0.0130 0.0004 41 1 4.1699 -2.1401 0.0103 42 1 3.5690 -4.2836 -1.6653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169250366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:49 Heat of formation + Delta-G solvation = -69.765155 kcal Electronic energy + Delta-G solvation = -21210.575407 eV Core-core repulsion = 18153.076394 eV Total energy + Delta-G solvation = -3057.499013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55178 -39.44527 -37.25989 -35.68697 -34.55083 -32.76775 -31.49894 -30.48132 -29.25207 -27.64871 -25.91679 -23.52708 -23.22997 -22.69248 -21.10725 -20.59169 -18.98661 -18.26561 -17.53099 -16.85393 -16.62607 -16.06012 -15.57564 -15.39263 -15.06235 -14.95586 -14.51783 -14.29301 -14.22745 -13.68128 -13.52066 -13.48947 -13.24501 -12.91203 -12.79226 -12.74824 -12.63656 -12.41289 -12.20886 -12.08665 -11.77133 -11.53356 -11.45393 -11.35502 -11.03931 -11.01754 -10.73361 -10.16139 -9.17112 -8.49580 -8.10913 -5.95346 1.11965 1.21243 1.41178 1.54798 1.59607 2.29229 2.72999 2.88556 3.36450 3.73006 3.85910 3.93132 4.04599 4.16810 4.30238 4.35907 4.42078 4.50359 4.52468 4.55679 4.64778 4.78111 4.95171 5.00402 5.06135 5.07029 5.09112 5.10766 5.19381 5.24443 5.33340 5.35081 5.35864 5.46631 5.54179 5.78609 5.94766 5.99672 6.26389 6.47166 6.71657 6.90062 6.93115 7.14809 7.19041 7.35236 8.53592 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.004031 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.221667 B = 6944.274846 C = 7607.744169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.166 4.166 3 C -0.171 4.171 4 C 0.119 3.881 5 N -0.748 5.748 6 C 0.168 3.832 7 H 0.059 0.941 8 C -0.133 4.133 9 C -0.112 4.112 10 C -0.141 4.141 11 C 0.111 3.889 12 H 0.060 0.940 13 O -0.583 6.583 14 C -0.111 4.111 15 C -0.180 4.180 16 C -0.141 4.141 17 C 0.036 3.964 18 C -0.494 4.494 19 H 0.072 0.928 20 C 0.031 3.969 21 N -0.846 5.846 22 Si 0.971 3.029 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.270 1.270 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.114 0.886 30 H 0.395 0.605 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.396 0.604 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.698 11.520 1.151 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.168 4.168 3 C -0.194 4.194 4 C 0.019 3.981 5 N -0.381 5.381 6 C 0.062 3.938 7 H 0.077 0.923 8 C -0.172 4.172 9 C -0.151 4.151 10 C -0.179 4.179 11 C 0.052 3.948 12 H 0.078 0.922 13 O -0.391 6.391 14 C -0.149 4.149 15 C -0.202 4.202 16 C -0.161 4.161 17 C 0.033 3.967 18 C -0.525 4.525 19 H 0.090 0.910 20 C -0.180 4.180 21 N -0.475 5.475 22 Si 0.794 3.206 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.132 0.868 30 H 0.229 0.771 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.246 0.754 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.379 11.432 1.075 14.826 hybrid contribution 0.123 -0.937 -0.152 0.957 sum 9.502 10.496 0.923 14.188 Atomic orbital electron populations 1.20399 0.91706 1.01051 1.00584 1.19768 0.95977 0.92655 1.08421 1.19973 0.92031 0.97025 1.10333 1.17431 0.90761 0.86066 1.03815 1.43966 1.04139 1.04316 1.85678 1.20555 0.80696 0.97111 0.95434 0.92280 1.22028 0.96514 1.01357 0.97313 1.21428 0.93953 0.97832 1.01847 1.22210 1.01778 0.97935 0.95940 1.21644 0.93227 0.86473 0.93428 0.92184 1.86458 1.28685 1.39284 1.84705 1.21605 0.94946 0.96921 1.01416 1.20202 0.97840 0.91866 1.10278 1.20849 0.94858 0.96227 1.04186 1.17694 0.92168 0.92824 0.93997 1.19580 1.02355 0.93695 1.36917 0.91018 1.26570 0.94760 1.04305 0.92405 1.69935 1.20805 1.31956 1.24753 0.85318 0.79146 0.77296 0.78862 1.18325 1.19607 1.19466 0.92722 0.92020 0.93223 0.86845 0.77114 0.93964 0.91814 0.91764 0.90630 0.91313 0.89428 0.75392 0.91728 0.90880 0.88075 0.88672 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.36 9.39 71.24 0.67 -2.69 16 2 C -0.17 -8.13 5.90 -19.66 -0.12 -8.25 16 3 C -0.17 -7.54 9.46 22.15 0.21 -7.33 16 4 C 0.12 5.07 6.65 38.67 0.26 5.33 16 5 N -0.75 -24.95 5.22 -318.53 -1.66 -26.61 16 6 C 0.17 4.77 2.14 44.99 0.10 4.87 16 7 H 0.06 1.87 6.45 -2.38 -0.02 1.85 16 8 C -0.13 -3.57 5.42 30.59 0.17 -3.41 16 9 C -0.11 -2.28 5.92 30.60 0.18 -2.10 16 10 C -0.14 -2.31 5.54 30.60 0.17 -2.14 16 11 C 0.11 2.13 3.47 30.61 0.11 2.24 16 12 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 13 O -0.58 -10.65 13.32 -148.98 -1.98 -12.63 16 14 C -0.11 -2.59 5.04 30.61 0.15 -2.44 16 15 C -0.18 -8.51 8.74 22.15 0.19 -8.32 16 16 C -0.14 -7.67 8.62 22.47 0.19 -7.48 16 17 C 0.04 1.99 5.56 -21.27 -0.12 1.87 16 18 C -0.49 -27.39 8.09 23.38 0.19 -27.20 16 19 H 0.07 3.85 6.89 -2.91 -0.02 3.83 16 20 C 0.03 1.62 5.15 85.22 0.44 2.06 16 21 N -0.85 -46.51 10.97 21.81 0.24 -46.27 16 22 Si 0.97 40.37 29.59 68.60 2.03 42.40 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 2.20 8.08 -2.39 -0.02 2.19 16 28 H 0.05 2.17 6.78 -2.38 -0.02 2.15 16 29 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.39 11.61 8.60 -92.71 -0.80 10.81 16 31 H 0.04 1.40 7.66 -2.39 -0.02 1.38 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.40 3.51 9.08 -74.06 -0.67 2.84 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.10 4.39 6.04 -2.91 -0.02 4.37 16 41 H 0.10 5.48 6.23 -2.91 -0.02 5.46 16 42 H 0.28 14.03 8.30 -92.70 -0.77 13.26 16 Total: -1.00 -63.84 330.97 0.97 -62.87 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.44 Total: 35.24 kcal Atomic # 6 Polarization: -57.78 SS G_CDS: 2.79 Total: -54.99 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.42 Total: -72.88 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.98 Total: -12.63 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -63.84 0.97 -62.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169250366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.900 kcal (2) G-P(sol) polarization free energy of solvation -63.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds