Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38247 * 120.00193 * 2 1 4 4 C 1.38210 * 120.00323 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99832 * 0.02645 * 4 3 2 6 6 C 1.38208 * 120.00131 * 359.70004 * 5 4 3 7 7 C 1.38208 * 119.99918 * 179.97438 * 2 1 3 8 8 C 1.50706 * 120.00175 * 359.97438 * 7 2 1 9 9 C 1.53000 * 109.47254 * 85.00086 * 8 7 2 10 10 C 1.52999 * 109.47251 * 180.02562 * 9 8 7 11 11 N 1.46897 * 109.47109 * 180.02562 * 10 9 8 12 12 C 1.47479 * 110.99965 * 169.99973 * 11 10 9 13 13 C 1.53517 * 87.99753 * 138.66774 * 12 11 10 14 14 O 1.42906 * 114.16678 * 87.65378 * 13 12 11 15 15 C 1.50698 * 114.17065 * 220.35504 * 13 12 11 16 16 H 1.07995 * 120.00122 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99831 * 180.02562 * 15 13 12 18 18 N 1.31519 * 120.00087 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00030 * 0.02562 * 17 15 13 20 20 H 1.48499 * 109.47114 * 90.00344 * 19 17 15 21 21 H 1.48502 * 109.46994 * 209.99928 * 19 17 15 22 22 H 1.48500 * 109.47211 * 329.99966 * 19 17 15 23 23 C 1.47487 * 110.99585 * 265.96938 * 11 10 9 24 24 H 1.09004 * 109.46628 * 270.01544 * 1 2 3 25 25 H 1.08998 * 109.47146 * 30.01417 * 1 2 3 26 26 H 1.08998 * 109.47347 * 150.01970 * 1 2 3 27 27 H 1.08007 * 119.99898 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.00527 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99989 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.00362 * 180.29300 * 6 5 4 31 31 H 1.09001 * 109.46634 * 324.99962 * 8 7 2 32 32 H 1.09000 * 109.46933 * 205.00284 * 8 7 2 33 33 H 1.08996 * 109.46851 * 59.99896 * 9 8 7 34 34 H 1.08996 * 109.46952 * 300.00328 * 9 8 7 35 35 H 1.08993 * 109.47213 * 59.99608 * 10 9 8 36 36 H 1.09000 * 109.46643 * 300.00019 * 10 9 8 37 37 H 1.09002 * 113.47562 * 253.46722 * 12 11 10 38 38 H 1.09003 * 113.47677 * 23.87325 * 12 11 10 39 39 H 0.96696 * 113.99578 * 180.02562 * 14 13 12 40 40 H 0.96994 * 120.00020 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.47787 * 336.06095 * 23 11 10 42 42 H 1.09001 * 113.47615 * 106.47267 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0062 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5021 0.0017 9 6 1.0801 -2.8819 -1.4349 10 6 0.3146 -4.2066 -1.4337 11 7 -0.0348 -4.5716 -2.8130 12 6 -0.5598 -5.9482 -2.8787 13 6 -1.6160 -5.4406 -3.8704 14 8 -1.1930 -5.4577 -5.2353 15 6 -2.9892 -6.0254 -3.6624 16 1 -3.1586 -6.7365 -2.8675 17 6 -4.0294 -5.6526 -4.4871 18 7 -5.2280 -6.1626 -4.3053 19 14 -3.7363 -4.4231 -5.8626 20 1 -3.3442 -5.1471 -7.0984 21 1 -4.9820 -3.6546 -6.1133 22 1 -2.6498 -3.4902 -5.4695 23 6 -1.3884 -4.0985 -3.1581 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5140 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6583 2.1326 0.0004 28 1 4.1205 2.1326 0.0010 29 1 5.3517 -0.0001 0.0005 30 1 4.1206 -2.1323 0.0110 31 1 0.5341 -2.3954 0.5915 32 1 2.0696 -3.2821 0.4363 33 1 1.9906 -2.9885 -2.0246 34 1 0.4551 -2.1019 -1.8695 35 1 -0.5958 -4.0996 -0.8440 36 1 0.9394 -4.9868 -0.9989 37 1 0.1405 -6.6596 -3.3164 38 1 -0.9816 -6.2975 -1.9362 39 1 -1.8600 -5.1372 -5.8578 40 1 -5.9598 -5.9000 -4.8852 41 1 -2.0322 -3.9538 -2.2905 42 1 -1.3903 -3.2416 -3.8319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169629855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = 10.843756 kcal Electronic energy + Delta-G solvation = -20931.016573 eV Core-core repulsion = 17877.013025 eV Total energy + Delta-G solvation = -3054.003548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81019 -39.38593 -35.56267 -34.27036 -32.61830 -32.43076 -30.89313 -28.09768 -27.02083 -25.68728 -25.16915 -23.25362 -21.99794 -20.88519 -20.46222 -19.08030 -17.32078 -16.47846 -16.28086 -15.94217 -15.30905 -15.01847 -14.72684 -14.19136 -13.96238 -13.50107 -13.28112 -13.25882 -13.04796 -12.83395 -12.58017 -12.29965 -12.18204 -12.07065 -11.78171 -11.49033 -11.33081 -11.11835 -10.94237 -10.77076 -10.50317 -10.41248 -10.14468 -9.95384 -9.23579 -8.92943 -8.88256 -8.62606 -8.52770 -8.09105 -6.33817 -4.37687 1.25474 1.28710 3.07025 3.15428 3.21836 3.63915 4.12535 4.54980 4.69319 4.72189 4.82290 4.88728 4.92744 5.08359 5.20595 5.29550 5.33429 5.46803 5.50352 5.54318 5.61610 5.63623 5.74765 5.79851 5.83001 5.92515 5.99006 6.03681 6.05727 6.18652 6.29997 6.39661 6.41004 6.49679 6.51152 6.62048 6.65192 6.89390 6.92857 6.99352 7.32795 7.80841 8.12928 8.68442 8.70005 9.25807 10.78803 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.003623 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.503597 B = 7726.652447 C = 8050.821342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.075 4.075 8 C -0.083 4.083 9 C -0.102 4.102 10 C 0.017 3.983 11 N -0.472 5.472 12 C 0.018 3.982 13 C 0.202 3.798 14 O -0.548 6.548 15 C -0.534 4.534 16 H 0.086 0.914 17 C 0.077 3.923 18 N -0.883 5.883 19 Si 0.861 3.139 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.254 1.254 23 C -0.033 4.033 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.347 0.653 40 H 0.269 0.731 41 H 0.071 0.929 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.730 12.464 9.384 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.133 4.133 7 C -0.075 4.075 8 C -0.121 4.121 9 C -0.139 4.139 10 C -0.112 4.112 11 N -0.194 5.194 12 C -0.111 4.111 13 C 0.161 3.839 14 O -0.359 6.359 15 C -0.571 4.571 16 H 0.104 0.896 17 C -0.127 4.127 18 N -0.519 5.519 19 Si 0.690 3.310 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.179 1.179 23 C -0.162 4.162 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.199 0.801 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.662 12.430 9.219 21.318 hybrid contribution -1.073 0.761 -0.343 1.360 sum 13.588 13.191 8.876 20.915 Atomic orbital electron populations 1.20909 0.91204 1.03403 1.02344 1.19819 0.96141 0.92619 0.99572 1.21020 0.94281 0.97424 1.01176 1.21082 0.94317 0.97938 1.01071 1.21096 0.99682 0.92607 1.01054 1.21064 0.93661 0.98127 1.00409 1.19821 0.93649 0.94771 0.99265 1.20649 0.99765 0.93512 0.98149 1.21421 1.00772 0.97004 0.94750 1.22689 0.99193 0.97102 0.92200 1.68863 1.24202 1.06531 1.19840 1.23897 0.96576 0.91937 0.98663 1.20106 0.93036 0.91183 0.79585 1.86466 1.44062 1.88274 1.17086 1.21325 0.90725 1.27288 1.17808 0.89570 1.25014 0.95106 0.95503 0.97117 1.69872 1.00780 1.42608 1.38650 0.87283 0.78179 0.82436 0.83123 1.19398 1.21304 1.17927 1.25021 0.88853 1.01561 1.00813 0.91207 0.91627 0.90620 0.86300 0.86396 0.86339 0.86111 0.90873 0.91095 0.91363 0.91859 0.93939 0.91693 0.90602 0.91008 0.80094 0.92083 0.91039 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.22 36.01 0.33 -0.92 16 2 C -0.08 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.26 9.70 -39.59 -0.38 -1.65 16 4 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 5 C -0.13 -1.26 10.05 -39.59 -0.40 -1.66 16 6 C -0.11 -1.25 9.68 -39.58 -0.38 -1.63 16 7 C -0.07 -0.88 5.13 -104.62 -0.54 -1.41 16 8 C -0.08 -0.94 4.65 -27.88 -0.13 -1.07 16 9 C -0.10 -1.40 5.33 -26.73 -0.14 -1.55 16 10 C 0.02 0.27 4.82 -3.83 -0.02 0.25 16 11 N -0.47 -9.33 6.33 -244.40 -1.55 -10.87 16 12 C 0.02 0.38 7.09 -7.54 -0.05 0.33 16 13 C 0.20 4.90 1.10 -91.18 -0.10 4.80 16 14 O -0.55 -13.80 13.32 -35.23 -0.47 -14.27 16 15 C -0.53 -14.62 9.27 -34.44 -0.32 -14.94 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.88 -25.77 13.96 55.43 0.77 -25.00 16 19 Si 0.86 20.20 24.42 -169.99 -4.15 16.05 16 20 H -0.27 -6.08 7.06 56.52 0.40 -5.68 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.25 -5.75 5.48 56.52 0.31 -5.44 16 23 C -0.03 -0.71 6.55 -7.47 -0.05 -0.76 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.07 0.84 5.43 -51.93 -0.28 0.56 16 27 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 28 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.07 0.80 6.99 -51.93 -0.36 0.44 16 32 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.93 6.91 -51.93 -0.36 0.58 16 35 H 0.04 0.66 7.30 -51.93 -0.38 0.28 16 36 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.07 1.43 7.87 -51.93 -0.41 1.02 16 39 H 0.35 8.39 3.17 45.56 0.14 8.53 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.07 1.51 7.37 -51.93 -0.38 1.12 16 42 H 0.07 1.48 7.13 -51.93 -0.37 1.11 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -29.94 331.06 -9.97 -39.90 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.27 Total: 10.57 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -3.29 Total: -21.37 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.77 Total: -35.87 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.47 Total: -14.27 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.15 Total: 16.05 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.94 -9.97 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169629855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.746 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds