Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38247 * 120.00193 * 2 1 4 4 C 1.38210 * 120.00323 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99832 * 0.02645 * 4 3 2 6 6 C 1.38208 * 120.00131 * 359.70004 * 5 4 3 7 7 C 1.38208 * 119.99918 * 179.97438 * 2 1 3 8 8 C 1.50706 * 120.00175 * 359.97438 * 7 2 1 9 9 C 1.53000 * 109.47254 * 85.00086 * 8 7 2 10 10 C 1.52999 * 109.47251 * 180.02562 * 9 8 7 11 11 N 1.46897 * 109.47109 * 180.02562 * 10 9 8 12 12 C 1.47479 * 110.99965 * 169.99973 * 11 10 9 13 13 C 1.53517 * 87.99753 * 138.66774 * 12 11 10 14 14 O 1.42906 * 114.16678 * 87.65378 * 13 12 11 15 15 C 1.50698 * 114.17065 * 220.35504 * 13 12 11 16 16 H 1.07995 * 120.00122 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99831 * 180.02562 * 15 13 12 18 18 N 1.31519 * 120.00087 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00030 * 0.02562 * 17 15 13 20 20 H 1.48499 * 109.47114 * 90.00344 * 19 17 15 21 21 H 1.48502 * 109.46994 * 209.99928 * 19 17 15 22 22 H 1.48500 * 109.47211 * 329.99966 * 19 17 15 23 23 C 1.47487 * 110.99585 * 265.96938 * 11 10 9 24 24 H 1.09004 * 109.46628 * 270.01544 * 1 2 3 25 25 H 1.08998 * 109.47146 * 30.01417 * 1 2 3 26 26 H 1.08998 * 109.47347 * 150.01970 * 1 2 3 27 27 H 1.08007 * 119.99898 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.00527 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99989 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.00362 * 180.29300 * 6 5 4 31 31 H 1.09001 * 109.46634 * 324.99962 * 8 7 2 32 32 H 1.09000 * 109.46933 * 205.00284 * 8 7 2 33 33 H 1.08996 * 109.46851 * 59.99896 * 9 8 7 34 34 H 1.08996 * 109.46952 * 300.00328 * 9 8 7 35 35 H 1.08993 * 109.47213 * 59.99608 * 10 9 8 36 36 H 1.09000 * 109.46643 * 300.00019 * 10 9 8 37 37 H 1.09002 * 113.47562 * 253.46722 * 12 11 10 38 38 H 1.09003 * 113.47677 * 23.87325 * 12 11 10 39 39 H 0.96696 * 113.99578 * 180.02562 * 14 13 12 40 40 H 0.96994 * 120.00020 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.47787 * 336.06095 * 23 11 10 42 42 H 1.09001 * 113.47615 * 106.47267 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0062 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5021 0.0017 9 6 1.0801 -2.8819 -1.4349 10 6 0.3146 -4.2066 -1.4337 11 7 -0.0348 -4.5716 -2.8130 12 6 -0.5598 -5.9482 -2.8787 13 6 -1.6160 -5.4406 -3.8704 14 8 -1.1930 -5.4577 -5.2353 15 6 -2.9892 -6.0254 -3.6624 16 1 -3.1586 -6.7365 -2.8675 17 6 -4.0294 -5.6526 -4.4871 18 7 -5.2280 -6.1626 -4.3053 19 14 -3.7363 -4.4231 -5.8626 20 1 -3.3442 -5.1471 -7.0984 21 1 -4.9820 -3.6546 -6.1133 22 1 -2.6498 -3.4902 -5.4695 23 6 -1.3884 -4.0985 -3.1581 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5140 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6583 2.1326 0.0004 28 1 4.1205 2.1326 0.0010 29 1 5.3517 -0.0001 0.0005 30 1 4.1206 -2.1323 0.0110 31 1 0.5341 -2.3954 0.5915 32 1 2.0696 -3.2821 0.4363 33 1 1.9906 -2.9885 -2.0246 34 1 0.4551 -2.1019 -1.8695 35 1 -0.5958 -4.0996 -0.8440 36 1 0.9394 -4.9868 -0.9989 37 1 0.1405 -6.6596 -3.3164 38 1 -0.9816 -6.2975 -1.9362 39 1 -1.8600 -5.1372 -5.8578 40 1 -5.9598 -5.9000 -4.8852 41 1 -2.0322 -3.9538 -2.2905 42 1 -1.3903 -3.2416 -3.8319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169629855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = -9.512425 kcal Electronic energy + Delta-G solvation = -20931.899284 eV Core-core repulsion = 17877.013025 eV Total energy + Delta-G solvation = -3054.886258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24073 -40.44097 -37.13651 -35.51150 -34.55097 -33.43748 -31.99210 -29.58180 -28.00298 -27.10697 -26.88130 -24.60684 -22.84517 -22.16658 -21.33649 -20.87554 -19.34973 -18.18372 -17.30952 -16.94392 -16.82225 -16.18917 -15.88086 -15.46978 -15.23505 -15.18938 -14.76522 -14.48188 -14.15424 -14.03167 -13.88123 -13.80675 -13.27312 -13.17270 -12.98367 -12.81191 -12.52260 -12.48555 -12.31762 -12.24563 -11.92700 -11.80308 -11.50838 -11.39811 -11.11626 -10.93124 -10.41293 -9.75838 -9.66226 -9.41820 -8.46088 -6.55618 0.47125 0.51161 1.20529 1.27247 1.35915 2.14676 2.76855 2.84303 3.07675 3.50848 3.80666 3.89584 3.95005 4.06758 4.10010 4.10905 4.23976 4.29998 4.43668 4.50037 4.54295 4.56504 4.70631 4.72349 4.78693 4.81998 4.82402 4.90150 4.90825 4.99587 5.06743 5.13844 5.23118 5.29477 5.31910 5.40186 5.49461 5.63215 5.64546 5.81083 6.00698 6.17159 6.24981 6.48989 6.75298 7.12035 8.69872 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.003623 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.503597 B = 7726.652447 C = 8050.821342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.130 4.130 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.094 4.094 8 C -0.074 4.074 9 C -0.090 4.090 10 C 0.017 3.983 11 N -0.473 5.473 12 C 0.024 3.976 13 C 0.182 3.818 14 O -0.555 6.555 15 C -0.544 4.544 16 H 0.052 0.948 17 C 0.024 3.976 18 N -0.927 5.927 19 Si 0.921 3.079 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.240 1.240 23 C -0.022 4.022 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.349 0.651 40 H 0.273 0.727 41 H 0.073 0.927 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.529 14.190 9.504 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.144 4.144 7 C -0.094 4.094 8 C -0.112 4.112 9 C -0.128 4.128 10 C -0.112 4.112 11 N -0.195 5.195 12 C -0.105 4.105 13 C 0.141 3.859 14 O -0.366 6.366 15 C -0.582 4.582 16 H 0.070 0.930 17 C -0.176 4.176 18 N -0.565 5.565 19 Si 0.746 3.254 20 H -0.179 1.179 21 H -0.207 1.207 22 H -0.165 1.165 23 C -0.151 4.151 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.152 0.848 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.202 0.798 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.480 14.154 9.350 23.651 hybrid contribution -1.601 0.185 -0.303 1.640 sum 14.879 14.339 9.047 22.557 Atomic orbital electron populations 1.20900 0.90838 1.03128 1.02834 1.20043 0.96684 0.93067 0.99996 1.21299 0.94891 0.97795 1.01022 1.21428 0.94320 0.98969 1.00096 1.21418 1.00911 0.92384 1.00423 1.21305 0.93594 0.99124 1.00406 1.19920 0.94176 0.94820 1.00440 1.20543 1.00178 0.94001 0.96432 1.21292 0.99762 0.95442 0.96315 1.22783 0.99847 0.98650 0.89919 1.68821 1.22658 1.05277 1.22719 1.23840 0.95712 0.92923 0.98047 1.20266 0.92283 0.93402 0.79916 1.86458 1.44151 1.88543 1.17476 1.21499 0.92805 1.26822 1.17046 0.92977 1.25829 0.94623 0.97436 0.99720 1.70002 1.01865 1.44477 1.40194 0.86286 0.78627 0.80277 0.80206 1.17900 1.20741 1.16458 1.24806 0.90064 0.99814 1.00463 0.90339 0.90943 0.91803 0.84789 0.84163 0.84267 0.85071 0.90562 0.89962 0.92078 0.93033 0.93669 0.90017 0.90159 0.90281 0.79834 0.91776 0.90903 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 9.22 71.24 0.66 -1.67 16 2 C -0.10 -2.10 5.88 -19.87 -0.12 -2.21 16 3 C -0.13 -2.52 9.70 22.27 0.22 -2.30 16 4 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 5 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 6 C -0.13 -2.52 9.68 22.27 0.22 -2.31 16 7 C -0.09 -2.04 5.13 -19.86 -0.10 -2.15 16 8 C -0.07 -1.56 4.65 29.85 0.14 -1.42 16 9 C -0.09 -2.35 5.33 30.59 0.16 -2.19 16 10 C 0.02 0.49 4.82 86.30 0.42 0.90 16 11 N -0.47 -17.90 6.33 -927.48 -5.87 -23.77 16 12 C 0.02 0.97 7.09 83.58 0.59 1.56 16 13 C 0.18 8.72 1.10 -11.15 -0.01 8.71 16 14 O -0.56 -27.20 13.32 -148.98 -1.98 -29.19 16 15 C -0.54 -30.29 9.27 25.60 0.24 -30.06 16 16 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 17 C 0.02 1.36 5.47 84.65 0.46 1.82 16 18 N -0.93 -55.25 13.96 21.45 0.30 -54.95 16 19 Si 0.92 41.28 24.42 68.60 1.67 42.96 16 20 H -0.25 -10.75 7.06 99.48 0.70 -10.05 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.24 -10.16 5.48 99.48 0.54 -9.62 16 23 C -0.02 -0.92 6.55 83.62 0.55 -0.37 16 24 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 26 H 0.06 1.37 5.43 -2.39 -0.01 1.36 16 27 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.08 1.55 6.99 -2.39 -0.02 1.53 16 32 H 0.08 1.53 8.05 -2.39 -0.02 1.51 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.46 6.91 -2.39 -0.02 1.45 16 35 H 0.04 1.33 7.30 -2.39 -0.02 1.32 16 36 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 37 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.08 3.09 7.87 -2.39 -0.02 3.07 16 39 H 0.35 16.25 3.17 -74.06 -0.23 16.01 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.07 3.02 7.37 -2.39 -0.02 3.00 16 42 H 0.07 2.81 7.13 -2.39 -0.02 2.79 16 Total: -1.00 -63.96 331.06 -1.42 -65.38 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.60 Total: 35.45 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.86 Total: -35.87 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -5.58 Total: -78.73 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -1.98 Total: -29.19 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.67 Total: 42.96 kcal Total: -63.96 -1.42 -65.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169629855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.869 kcal (2) G-P(sol) polarization free energy of solvation -63.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds