Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36352 * 120.08149 * 2 1 4 4 C 1.39547 * 120.16492 * 180.27530 * 3 2 1 5 5 N 1.38853 * 119.84758 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00106 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.54168 * 325.17770 * 6 5 4 8 8 C 1.53174 * 109.54337 * 85.44162 * 6 5 4 9 9 C 1.53095 * 109.16263 * 62.88690 * 8 6 5 10 10 O 1.42902 * 109.41428 * 57.60755 * 9 8 6 11 11 C 1.42897 * 114.09715 * 298.83943 * 10 9 8 12 12 C 1.53089 * 109.41443 * 61.16096 * 11 10 9 13 13 H 1.09009 * 109.52366 * 62.29672 * 12 11 10 14 14 C 1.53002 * 109.52365 * 182.48448 * 12 11 10 15 15 C 1.39589 * 120.31038 * 0.02562 * 4 3 2 16 16 C 1.36326 * 120.16497 * 0.02562 * 15 4 3 17 17 C 1.40867 * 120.07960 * 180.27962 * 2 1 3 18 18 C 1.41134 * 120.15691 * 359.74767 * 17 2 1 19 19 H 1.08000 * 120.00048 * 334.17675 * 18 17 2 20 20 C 1.39864 * 120.00272 * 154.18258 * 18 17 2 21 21 N 1.30906 * 119.99765 * 342.89534 * 20 18 17 22 22 Si 1.86796 * 120.00407 * 162.89735 * 20 18 17 23 23 H 1.48495 * 109.47101 * 94.63182 * 22 20 18 24 24 H 1.48502 * 109.47359 * 214.63391 * 22 20 18 25 25 H 1.48501 * 109.47099 * 334.63709 * 22 20 18 26 26 H 1.09001 * 109.47684 * 269.72136 * 1 2 3 27 27 H 1.08999 * 109.47152 * 29.72263 * 1 2 3 28 28 H 1.09005 * 109.47597 * 149.71799 * 1 2 3 29 29 H 1.08001 * 119.91860 * 0.28146 * 3 2 1 30 30 H 0.97004 * 119.99750 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.52263 * 182.79204 * 8 6 5 32 32 H 1.08996 * 109.52202 * 302.98298 * 8 6 5 33 33 H 1.08995 * 109.48235 * 297.62351 * 9 8 6 34 34 H 1.09005 * 109.48871 * 177.59400 * 9 8 6 35 35 H 1.09001 * 109.48468 * 301.17302 * 11 10 9 36 36 H 1.09006 * 109.47828 * 181.14275 * 11 10 9 37 37 H 1.08994 * 109.47341 * 179.68938 * 14 12 11 38 38 H 1.09010 * 109.46938 * 299.68507 * 14 12 11 39 39 H 1.08995 * 109.47169 * 59.67950 * 14 12 11 40 40 H 1.07997 * 119.91887 * 180.02562 * 15 4 3 41 41 H 1.07995 * 120.08433 * 180.02562 * 16 15 4 42 42 H 0.97005 * 120.00306 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1819 -0.0058 5 7 4.2752 2.3873 -0.0052 6 6 5.7402 2.3933 -0.0107 7 1 6.1104 1.5500 0.5722 8 6 6.2476 2.2845 -1.4519 9 6 5.7866 3.5127 -2.2411 10 8 6.2682 4.6965 -1.6017 11 6 5.7883 4.8755 -0.2677 12 6 6.2494 3.7021 0.6008 13 1 7.3386 3.6854 0.6421 14 6 5.6853 3.8595 2.0143 15 6 4.2921 -0.0221 -0.0122 16 6 3.6220 -1.2093 -0.0133 17 6 2.2130 -1.2189 -0.0059 18 6 1.5124 -2.4441 -0.0066 19 1 0.5151 -2.4960 0.4045 20 6 2.1097 -3.5911 -0.5394 21 7 3.1503 -3.4818 -1.3260 22 14 1.4226 -5.2788 -0.1286 23 1 0.4750 -5.6996 -1.1917 24 1 2.5352 -6.2584 -0.0411 25 1 0.7111 -5.2201 1.1735 26 1 -0.3634 -0.0050 1.0276 27 1 -0.3633 0.8925 -0.5095 28 1 -0.3634 -0.8875 -0.5182 29 1 1.6504 2.1152 0.0046 30 1 3.7867 3.2253 -0.0012 31 1 7.3367 2.2391 -1.4521 32 1 5.8444 1.3829 -1.9129 33 1 4.6974 3.5353 -2.2748 34 1 6.1807 3.4617 -3.2561 35 1 4.6991 4.9160 -0.2755 36 1 6.1838 5.8063 0.1391 37 1 6.0095 3.0209 2.6304 38 1 6.0482 4.7912 2.4487 39 1 4.5964 3.8790 1.9708 40 1 5.3720 -0.0132 -0.0162 41 1 4.1697 -2.1401 -0.0178 42 1 3.5644 -4.2772 -1.6959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170822368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = -37.832555 kcal Electronic energy + Delta-G solvation = -21706.261239 eV Core-core repulsion = 18650.146928 eV Total energy + Delta-G solvation = -3056.114311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.86617 -37.85900 -35.57050 -33.66837 -32.65638 -31.38327 -30.62298 -28.33355 -26.74177 -26.08706 -24.56783 -24.09290 -22.15221 -20.88667 -20.21083 -18.36255 -17.10490 -16.70042 -16.02698 -15.55946 -15.30524 -14.98116 -14.46555 -14.09539 -13.87233 -13.47643 -12.93733 -12.78917 -12.54248 -12.39355 -12.18386 -11.93137 -11.80955 -11.53007 -11.47324 -11.16760 -11.09355 -11.02244 -10.96315 -10.83638 -10.53406 -10.35375 -10.18462 -9.56270 -9.38477 -9.23549 -9.15704 -8.44838 -7.33104 -6.63691 -6.36664 -4.02464 2.90256 3.06592 3.14476 3.19311 3.35156 3.92654 4.05153 4.27250 4.71882 4.75294 4.85691 4.98006 5.19405 5.24868 5.49105 5.53245 5.57255 5.69921 5.75526 5.84074 5.97165 6.05173 6.10913 6.15587 6.24288 6.29572 6.32028 6.35537 6.45455 6.71102 6.74692 6.92644 7.03557 7.22961 7.24783 7.36381 7.62164 7.75186 7.82376 8.15345 8.31904 8.49520 8.69180 8.79527 9.06878 9.16255 10.37678 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027986 B = 0.004412 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.246590 B = 6344.613161 C = 6664.807547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.158 4.158 4 C 0.098 3.902 5 N -0.752 5.752 6 C 0.167 3.833 7 H 0.076 0.924 8 C -0.172 4.172 9 C 0.065 3.935 10 O -0.388 6.388 11 C 0.068 3.932 12 C -0.133 4.133 13 H 0.083 0.917 14 C -0.140 4.140 15 C -0.168 4.168 16 C -0.121 4.121 17 C 0.078 3.922 18 C -0.463 4.463 19 H 0.074 0.926 20 C 0.075 3.925 21 N -0.808 5.808 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.263 1.263 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.381 0.619 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.030 10.706 1.984 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.002 3.998 5 N -0.388 5.388 6 C 0.060 3.940 7 H 0.094 0.906 8 C -0.212 4.212 9 C -0.011 4.011 10 O -0.307 6.307 11 C -0.009 4.009 12 C -0.152 4.152 13 H 0.101 0.899 14 C -0.198 4.198 15 C -0.189 4.189 16 C -0.141 4.141 17 C 0.075 3.925 18 C -0.494 4.494 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.436 5.436 22 Si 0.725 3.275 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.187 1.187 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.214 0.786 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.467 10.588 1.757 12.045 hybrid contribution -0.524 -0.815 0.158 0.982 sum 4.942 9.772 1.915 11.117 Atomic orbital electron populations 1.20412 0.93755 1.00440 0.99573 1.19284 0.94105 0.92745 1.09914 1.19634 0.91539 0.96333 1.10489 1.17292 0.90499 0.85090 1.06967 1.43967 1.02849 1.05127 1.86842 1.20595 0.82600 0.96510 0.94326 0.90562 1.22681 1.00831 0.99550 0.98112 1.22503 0.98780 0.84042 0.95777 1.87876 1.72387 1.43152 1.27243 1.22570 0.98164 0.97658 0.82532 1.22030 1.01231 0.95995 0.95993 0.89911 1.21680 1.01733 1.01289 0.95079 1.20089 0.97032 0.91988 1.09823 1.20903 0.94603 0.96057 1.02533 1.17345 0.91616 0.91595 0.91954 1.19356 1.01863 0.92622 1.35566 0.90771 1.25789 0.94389 1.00880 0.92955 1.69856 1.19498 1.31062 1.23136 0.86446 0.79279 0.81892 0.79908 1.19884 1.20335 1.18683 0.94078 0.94573 0.91967 0.89797 0.78579 0.91445 0.89975 0.92743 0.89473 0.93363 0.89315 0.92267 0.93039 0.92004 0.89448 0.86570 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.39 36.00 0.34 -1.44 16 2 C -0.16 -3.80 5.90 -104.31 -0.62 -4.41 16 3 C -0.16 -3.46 9.46 -39.77 -0.38 -3.84 16 4 C 0.10 2.05 6.65 -83.69 -0.56 1.50 16 5 N -0.75 -12.37 3.81 -51.86 -0.20 -12.56 16 6 C 0.17 2.42 1.97 -67.75 -0.13 2.28 16 7 H 0.08 1.21 6.44 -51.93 -0.33 0.88 16 8 C -0.17 -2.45 5.75 -26.59 -0.15 -2.60 16 9 C 0.07 0.89 6.68 37.21 0.25 1.13 16 10 O -0.39 -5.29 10.77 -35.23 -0.38 -5.67 16 11 C 0.07 0.78 5.95 37.20 0.22 1.01 16 12 C -0.13 -1.57 2.71 -90.48 -0.25 -1.82 16 13 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 14 C -0.14 -1.56 9.01 37.16 0.33 -1.22 16 15 C -0.17 -3.80 8.80 -39.77 -0.35 -4.15 16 16 C -0.12 -3.11 8.62 -39.26 -0.34 -3.45 16 17 C 0.08 2.05 5.56 -106.79 -0.59 1.46 16 18 C -0.46 -12.28 8.10 -37.88 -0.31 -12.59 16 19 H 0.07 1.90 6.88 -52.49 -0.36 1.54 16 20 C 0.07 1.91 5.14 -17.34 -0.09 1.82 16 21 N -0.81 -21.25 10.99 55.54 0.61 -20.64 16 22 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.06 1.34 6.78 -51.93 -0.35 0.99 16 29 H 0.08 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.38 5.78 6.68 -40.82 -0.27 5.51 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.34 7.83 -51.93 -0.41 0.94 16 33 H 0.05 0.79 7.75 -51.93 -0.40 0.38 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.56 6.71 -51.93 -0.35 0.21 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.06 0.74 7.27 -51.93 -0.38 0.36 16 40 H 0.09 1.83 6.17 -52.49 -0.32 1.50 16 41 H 0.12 3.13 6.22 -52.49 -0.33 2.80 16 42 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -27.29 326.33 -9.14 -36.43 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.44 Total: 9.79 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -2.62 Total: -26.32 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.41 Total: -33.20 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.38 Total: -5.67 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.29 -9.14 -36.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170822368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.405 kcal (2) G-P(sol) polarization free energy of solvation -27.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds