Wall clock time and date at job start Mon Mar 30 2020 02:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36352 * 120.08149 * 2 1 4 4 C 1.39547 * 120.16492 * 180.27530 * 3 2 1 5 5 N 1.38853 * 119.84758 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00106 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.54168 * 325.17770 * 6 5 4 8 8 C 1.53174 * 109.54337 * 85.44162 * 6 5 4 9 9 C 1.53095 * 109.16263 * 62.88690 * 8 6 5 10 10 O 1.42902 * 109.41428 * 57.60755 * 9 8 6 11 11 C 1.42897 * 114.09715 * 298.83943 * 10 9 8 12 12 C 1.53089 * 109.41443 * 61.16096 * 11 10 9 13 13 H 1.09009 * 109.52366 * 62.29672 * 12 11 10 14 14 C 1.53002 * 109.52365 * 182.48448 * 12 11 10 15 15 C 1.39589 * 120.31038 * 0.02562 * 4 3 2 16 16 C 1.36326 * 120.16497 * 0.02562 * 15 4 3 17 17 C 1.40867 * 120.07960 * 180.27962 * 2 1 3 18 18 C 1.41134 * 120.15691 * 359.74767 * 17 2 1 19 19 H 1.08000 * 120.00048 * 334.17675 * 18 17 2 20 20 C 1.39864 * 120.00272 * 154.18258 * 18 17 2 21 21 N 1.30906 * 119.99765 * 342.89534 * 20 18 17 22 22 Si 1.86796 * 120.00407 * 162.89735 * 20 18 17 23 23 H 1.48495 * 109.47101 * 94.63182 * 22 20 18 24 24 H 1.48502 * 109.47359 * 214.63391 * 22 20 18 25 25 H 1.48501 * 109.47099 * 334.63709 * 22 20 18 26 26 H 1.09001 * 109.47684 * 269.72136 * 1 2 3 27 27 H 1.08999 * 109.47152 * 29.72263 * 1 2 3 28 28 H 1.09005 * 109.47597 * 149.71799 * 1 2 3 29 29 H 1.08001 * 119.91860 * 0.28146 * 3 2 1 30 30 H 0.97004 * 119.99750 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.52263 * 182.79204 * 8 6 5 32 32 H 1.08996 * 109.52202 * 302.98298 * 8 6 5 33 33 H 1.08995 * 109.48235 * 297.62351 * 9 8 6 34 34 H 1.09005 * 109.48871 * 177.59400 * 9 8 6 35 35 H 1.09001 * 109.48468 * 301.17302 * 11 10 9 36 36 H 1.09006 * 109.47828 * 181.14275 * 11 10 9 37 37 H 1.08994 * 109.47341 * 179.68938 * 14 12 11 38 38 H 1.09010 * 109.46938 * 299.68507 * 14 12 11 39 39 H 1.08995 * 109.47169 * 59.67950 * 14 12 11 40 40 H 1.07997 * 119.91887 * 180.02562 * 15 4 3 41 41 H 1.07995 * 120.08433 * 180.02562 * 16 15 4 42 42 H 0.97005 * 120.00306 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1819 -0.0058 5 7 4.2752 2.3873 -0.0052 6 6 5.7402 2.3933 -0.0107 7 1 6.1104 1.5500 0.5722 8 6 6.2476 2.2845 -1.4519 9 6 5.7866 3.5127 -2.2411 10 8 6.2682 4.6965 -1.6017 11 6 5.7883 4.8755 -0.2677 12 6 6.2494 3.7021 0.6008 13 1 7.3386 3.6854 0.6421 14 6 5.6853 3.8595 2.0143 15 6 4.2921 -0.0221 -0.0122 16 6 3.6220 -1.2093 -0.0133 17 6 2.2130 -1.2189 -0.0059 18 6 1.5124 -2.4441 -0.0066 19 1 0.5151 -2.4960 0.4045 20 6 2.1097 -3.5911 -0.5394 21 7 3.1503 -3.4818 -1.3260 22 14 1.4226 -5.2788 -0.1286 23 1 0.4750 -5.6996 -1.1917 24 1 2.5352 -6.2584 -0.0411 25 1 0.7111 -5.2201 1.1735 26 1 -0.3634 -0.0050 1.0276 27 1 -0.3633 0.8925 -0.5095 28 1 -0.3634 -0.8875 -0.5182 29 1 1.6504 2.1152 0.0046 30 1 3.7867 3.2253 -0.0012 31 1 7.3367 2.2391 -1.4521 32 1 5.8444 1.3829 -1.9129 33 1 4.6974 3.5353 -2.2748 34 1 6.1807 3.4617 -3.2561 35 1 4.6991 4.9160 -0.2755 36 1 6.1838 5.8063 0.1391 37 1 6.0095 3.0209 2.6304 38 1 6.0482 4.7912 2.4487 39 1 4.5964 3.8790 1.9708 40 1 5.3720 -0.0132 -0.0162 41 1 4.1697 -2.1401 -0.0178 42 1 3.5644 -4.2772 -1.6959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170822368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:52 Heat of formation + Delta-G solvation = -51.917581 kcal Electronic energy + Delta-G solvation = -21706.872012 eV Core-core repulsion = 18650.146928 eV Total energy + Delta-G solvation = -3056.725084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.05065 -39.53222 -36.93270 -35.28797 -34.05959 -32.76333 -32.30201 -30.03102 -28.05375 -27.45202 -26.00776 -25.61965 -23.27883 -22.65150 -21.68990 -19.78117 -18.97957 -18.08553 -17.06662 -16.89716 -16.67458 -16.61223 -15.60423 -15.58244 -15.32518 -14.97149 -14.47925 -14.24977 -14.11514 -13.81449 -13.49919 -13.26677 -13.09597 -12.95005 -12.87715 -12.76356 -12.72988 -12.54662 -12.51909 -12.18271 -11.97939 -11.62383 -11.38132 -11.25088 -11.08061 -10.99360 -10.44444 -10.11323 -9.16528 -8.50662 -8.10321 -5.94619 1.12709 1.21692 1.40382 1.52350 1.60499 2.28385 2.85103 2.89090 2.96171 3.69490 3.82164 3.88832 3.93949 4.06182 4.26613 4.42626 4.46937 4.51148 4.52313 4.67392 4.77421 4.77971 4.84876 4.94192 4.96317 4.98040 5.06077 5.08078 5.14042 5.17414 5.23467 5.33954 5.34970 5.41156 5.54045 5.78537 5.94620 5.99671 6.23662 6.26374 6.47313 6.71540 6.92206 7.14600 7.18081 7.34872 8.52325 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027986 B = 0.004412 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.246590 B = 6344.613161 C = 6664.807547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.166 4.166 3 C -0.170 4.170 4 C 0.123 3.877 5 N -0.738 5.738 6 C 0.161 3.839 7 H 0.061 0.939 8 C -0.169 4.169 9 C 0.070 3.930 10 O -0.395 6.395 11 C 0.064 3.936 12 C -0.123 4.123 13 H 0.094 0.906 14 C -0.137 4.137 15 C -0.179 4.179 16 C -0.142 4.142 17 C 0.036 3.964 18 C -0.494 4.494 19 H 0.071 0.929 20 C 0.031 3.969 21 N -0.845 5.845 22 Si 0.970 3.030 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.261 1.261 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.112 0.888 30 H 0.392 0.608 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 12.842 2.485 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.168 4.168 3 C -0.192 4.192 4 C 0.024 3.976 5 N -0.373 5.373 6 C 0.055 3.945 7 H 0.079 0.921 8 C -0.208 4.208 9 C -0.007 4.007 10 O -0.314 6.314 11 C -0.012 4.012 12 C -0.142 4.142 13 H 0.112 0.888 14 C -0.195 4.195 15 C -0.201 4.201 16 C -0.162 4.162 17 C 0.033 3.967 18 C -0.526 4.526 19 H 0.090 0.910 20 C -0.180 4.180 21 N -0.474 5.474 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.197 1.197 25 H -0.185 1.185 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.227 0.773 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.627 12.772 2.262 14.139 hybrid contribution -0.485 -1.257 0.019 1.347 sum 5.141 11.516 2.281 12.816 Atomic orbital electron populations 1.20396 0.91806 1.00990 1.00553 1.19736 0.95890 0.92657 1.08489 1.19938 0.92049 0.96873 1.10372 1.17368 0.90615 0.86036 1.03612 1.43952 1.03852 1.04028 1.85486 1.20753 0.81129 0.97937 0.94680 0.92063 1.22616 1.01617 0.98909 0.97668 1.22448 0.98155 0.83724 0.96368 1.87881 1.72515 1.42758 1.28216 1.22754 0.98450 0.98455 0.81580 1.21971 1.01798 0.94224 0.96250 0.88775 1.21654 1.01080 1.02271 0.94454 1.20174 0.97711 0.91917 1.10305 1.20829 0.94817 0.96244 1.04318 1.17680 0.92155 0.92817 0.94064 1.19550 1.02206 0.93815 1.37023 0.91048 1.26561 0.94697 1.04318 0.92416 1.69934 1.20999 1.32104 1.24348 0.85384 0.78646 0.77172 0.79620 1.19168 1.19706 1.18462 0.92747 0.92036 0.93336 0.86959 0.77281 0.90037 0.92585 0.93769 0.88277 0.93222 0.86776 0.93174 0.90540 0.92913 0.88301 0.88903 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.30 9.39 71.24 0.67 -2.63 16 2 C -0.17 -7.95 5.90 -19.66 -0.12 -8.07 16 3 C -0.17 -7.24 9.46 22.15 0.21 -7.03 16 4 C 0.12 5.05 6.65 38.67 0.26 5.30 16 5 N -0.74 -22.97 3.81 -317.99 -1.21 -24.18 16 6 C 0.16 4.42 1.97 45.11 0.09 4.50 16 7 H 0.06 1.89 6.44 -2.39 -0.02 1.88 16 8 C -0.17 -4.59 5.75 30.68 0.18 -4.41 16 9 C 0.07 1.75 6.68 72.01 0.48 2.23 16 10 O -0.39 -9.57 10.77 -148.98 -1.60 -11.18 16 11 C 0.06 1.26 5.95 72.01 0.43 1.69 16 12 C -0.12 -2.54 2.71 -10.70 -0.03 -2.57 16 13 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 14 C -0.14 -2.63 9.01 71.98 0.65 -1.98 16 15 C -0.18 -8.29 8.80 22.15 0.19 -8.09 16 16 C -0.14 -7.63 8.62 22.48 0.19 -7.43 16 17 C 0.04 1.94 5.56 -21.27 -0.12 1.83 16 18 C -0.49 -27.23 8.10 23.37 0.19 -27.05 16 19 H 0.07 3.80 6.88 -2.91 -0.02 3.78 16 20 C 0.03 1.65 5.14 85.22 0.44 2.09 16 21 N -0.85 -46.41 10.99 21.82 0.24 -46.17 16 22 Si 0.97 40.25 29.59 68.60 2.03 42.28 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 28 H 0.05 2.09 6.78 -2.38 -0.02 2.08 16 29 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.39 10.83 6.68 -92.71 -0.62 10.21 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.82 7.83 -2.39 -0.02 1.81 16 33 H 0.04 1.19 7.75 -2.39 -0.02 1.17 16 34 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.05 0.97 6.71 -2.39 -0.02 0.96 16 36 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.05 1.11 7.27 -2.39 -0.02 1.09 16 40 H 0.10 4.23 6.17 -2.91 -0.02 4.22 16 41 H 0.09 5.33 6.22 -2.91 -0.02 5.31 16 42 H 0.28 14.05 8.30 -92.70 -0.77 13.28 16 Total: -1.00 -60.67 326.33 3.56 -57.10 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.40 Total: 33.79 kcal Atomic # 6 Polarization: -55.35 SS G_CDS: 3.71 Total: -51.64 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -0.97 Total: -70.35 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.60 Total: -11.18 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -60.67 3.56 -57.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170822368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.187 kcal (2) G-P(sol) polarization free energy of solvation -60.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds