Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36363 * 120.07914 * 2 1 4 4 C 1.39548 * 120.15775 * 180.27156 * 3 2 1 5 5 N 1.38861 * 119.83994 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00048 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.54183 * 34.82327 * 6 5 4 8 8 C 1.53176 * 109.54171 * 274.55554 * 6 5 4 9 9 C 1.53095 * 109.16299 * 183.15071 * 8 6 5 10 10 O 1.42908 * 109.40970 * 57.61080 * 9 8 6 11 11 C 1.42897 * 114.09874 * 298.84003 * 10 9 8 12 12 C 1.53092 * 109.41597 * 61.16072 * 11 10 9 13 13 H 1.08998 * 109.57647 * 62.32988 * 12 11 10 14 14 C 1.52999 * 109.52337 * 182.48645 * 12 11 10 15 15 C 1.39580 * 120.31907 * 0.02562 * 4 3 2 16 16 C 1.36321 * 120.16140 * 359.97438 * 15 4 3 17 17 C 1.40863 * 120.08379 * 180.26740 * 2 1 3 18 18 C 1.41133 * 120.15523 * 359.75395 * 17 2 1 19 19 H 1.07998 * 119.99969 * 334.16783 * 18 17 2 20 20 C 1.39874 * 120.00349 * 154.17259 * 18 17 2 21 21 N 1.30901 * 119.99356 * 342.89014 * 20 18 17 22 22 Si 1.86790 * 120.00170 * 162.89294 * 20 18 17 23 23 H 1.48504 * 109.47514 * 94.63377 * 22 20 18 24 24 H 1.48502 * 109.47137 * 214.63306 * 22 20 18 25 25 H 1.48496 * 109.47615 * 334.63456 * 22 20 18 26 26 H 1.09001 * 109.47787 * 269.72976 * 1 2 3 27 27 H 1.09007 * 109.47299 * 29.73003 * 1 2 3 28 28 H 1.09006 * 109.46914 * 149.72641 * 1 2 3 29 29 H 1.07997 * 119.92108 * 0.24644 * 3 2 1 30 30 H 0.96998 * 119.99615 * 0.02562 * 5 4 3 31 31 H 1.09004 * 109.52354 * 303.05969 * 8 6 5 32 32 H 1.08999 * 109.52320 * 63.24649 * 8 6 5 33 33 H 1.08993 * 109.48155 * 297.63182 * 9 8 6 34 34 H 1.08993 * 109.48776 * 177.59446 * 9 8 6 35 35 H 1.08999 * 109.48013 * 301.17650 * 11 10 9 36 36 H 1.08996 * 109.49252 * 181.15222 * 11 10 9 37 37 H 1.08997 * 109.47529 * 179.68767 * 14 12 11 38 38 H 1.09002 * 109.47171 * 299.68316 * 14 12 11 39 39 H 1.08999 * 109.47572 * 59.68741 * 14 12 11 40 40 H 1.08007 * 119.92046 * 179.97438 * 15 4 3 41 41 H 1.08005 * 120.08306 * 179.97438 * 16 15 4 42 42 H 0.97005 * 119.99395 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1904 1.1800 0.0000 4 6 3.5858 1.1819 -0.0057 5 7 4.2751 2.3874 -0.0062 6 6 5.7401 2.3935 -0.0128 7 1 6.1056 1.5530 -0.6028 8 6 6.2594 2.2779 1.4236 9 6 7.7879 2.3643 1.4139 10 8 8.1902 3.5936 0.8064 11 6 7.7733 3.7365 -0.5529 12 6 6.2443 3.7052 -0.6223 13 1 5.8360 4.5472 -0.0633 14 6 5.7967 3.7958 -2.0825 15 6 4.2921 -0.0220 -0.0120 16 6 3.6221 -1.2092 -0.0121 17 6 2.2130 -1.2189 -0.0057 18 6 1.5125 -2.4441 -0.0062 19 1 0.5152 -2.4960 0.4050 20 6 2.1098 -3.5911 -0.5390 21 7 3.1503 -3.4818 -1.3258 22 14 1.4228 -5.2788 -0.1279 23 1 0.4751 -5.6999 -1.1909 24 1 2.5355 -6.2583 -0.0405 25 1 0.7116 -5.2200 1.1743 26 1 -0.3635 -0.0048 1.0276 27 1 -0.3634 0.8924 -0.5097 28 1 -0.3633 -0.8876 -0.5181 29 1 1.6504 2.1153 0.0040 30 1 3.7866 3.2253 -0.0022 31 1 5.8524 3.0911 2.0247 32 1 5.9513 1.3217 1.8465 33 1 8.1956 1.5278 0.8464 34 1 8.1608 2.3255 2.4373 35 1 8.1809 2.9180 -1.1462 36 1 8.1357 4.6862 -0.9466 37 1 4.7082 3.7679 -2.1313 38 1 6.1559 4.7295 -2.5154 39 1 6.2071 2.9547 -2.6412 40 1 5.3721 -0.0130 -0.0168 41 1 4.1698 -2.1400 -0.0174 42 1 3.5643 -4.2773 -1.6956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170822370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = -40.672686 kcal Electronic energy + Delta-G solvation = -21491.836376 eV Core-core repulsion = 18435.598907 eV Total energy + Delta-G solvation = -3056.237469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.70796 -37.94442 -35.72939 -33.67029 -32.69163 -31.42435 -30.66279 -28.43320 -26.78347 -26.11085 -24.56193 -23.45245 -22.20370 -21.03678 -20.13810 -19.00779 -17.10046 -16.36223 -16.15888 -15.82351 -15.03637 -14.84175 -14.63346 -14.14301 -13.78795 -13.50742 -12.95895 -12.92639 -12.57562 -12.47991 -12.10792 -11.98477 -11.70964 -11.56919 -11.46517 -11.14603 -11.07405 -11.03031 -10.91559 -10.84984 -10.59294 -10.32891 -10.17203 -9.63803 -9.51104 -9.22461 -9.16266 -8.46354 -7.32959 -6.63411 -6.36018 -4.02372 2.90293 3.06674 3.14473 3.19425 3.35326 3.84406 4.05217 4.23212 4.70286 4.74668 4.86432 4.94396 5.19372 5.26476 5.43459 5.49771 5.56932 5.67719 5.70554 5.75804 5.86612 5.97777 6.07373 6.18316 6.24845 6.27221 6.29231 6.45106 6.47814 6.71625 6.74346 6.92822 7.03959 7.16584 7.23179 7.36684 7.62501 7.75664 7.82783 8.15454 8.32339 8.50028 8.70716 8.80389 9.06957 9.16528 10.37782 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.004371 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.874493 B = 6404.185179 C = 6940.158841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.158 4.158 4 C 0.098 3.902 5 N -0.753 5.753 6 C 0.169 3.831 7 H 0.073 0.927 8 C -0.172 4.172 9 C 0.062 3.938 10 O -0.387 6.387 11 C 0.069 3.931 12 C -0.133 4.133 13 H 0.077 0.923 14 C -0.142 4.142 15 C -0.168 4.168 16 C -0.121 4.121 17 C 0.078 3.922 18 C -0.463 4.463 19 H 0.074 0.926 20 C 0.075 3.925 21 N -0.808 5.808 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.263 1.263 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.383 0.617 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.638 9.862 1.072 11.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.161 4.161 3 C -0.180 4.180 4 C 0.001 3.999 5 N -0.386 5.386 6 C 0.062 3.938 7 H 0.091 0.909 8 C -0.211 4.211 9 C -0.015 4.015 10 O -0.305 6.305 11 C -0.008 4.008 12 C -0.152 4.152 13 H 0.096 0.904 14 C -0.199 4.199 15 C -0.190 4.190 16 C -0.141 4.141 17 C 0.075 3.925 18 C -0.494 4.494 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.436 5.436 22 Si 0.725 3.275 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.187 1.187 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.215 0.785 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.046 9.750 1.012 12.072 hybrid contribution -0.596 -0.765 -0.044 0.971 sum 6.450 8.984 0.968 11.102 Atomic orbital electron populations 1.20412 0.93726 1.00450 0.99589 1.19295 0.94133 0.92749 1.09875 1.19648 0.91529 0.96383 1.10424 1.17308 0.90543 0.85098 1.06919 1.43884 1.02760 1.05207 1.86762 1.20603 0.82671 0.96362 0.94185 0.90900 1.22766 0.95423 1.03560 0.99373 1.22604 0.94396 0.86242 0.98291 1.87889 1.77165 1.39270 1.26197 1.22609 0.92969 1.01869 0.83365 1.22049 0.96548 0.98909 0.97726 0.90434 1.21697 1.02360 1.01217 0.94634 1.20078 0.96966 0.92026 1.09949 1.20904 0.94620 0.96039 1.02562 1.17341 0.91603 0.91600 0.91970 1.19358 1.01868 0.92617 1.35570 0.90755 1.25793 0.94387 1.00891 0.92945 1.69858 1.19525 1.31055 1.23153 0.86444 0.79278 0.81869 0.79917 1.19879 1.20334 1.18672 0.94060 0.94553 0.91958 0.89696 0.78451 0.91346 0.90196 0.93154 0.89043 0.93060 0.88995 0.91686 0.92970 0.92527 0.89546 0.86550 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.39 36.00 0.34 -1.44 16 2 C -0.16 -3.83 5.90 -104.31 -0.62 -4.44 16 3 C -0.16 -3.50 9.46 -39.77 -0.38 -3.88 16 4 C 0.10 2.09 6.65 -83.69 -0.56 1.53 16 5 N -0.75 -12.73 4.61 -51.86 -0.24 -12.97 16 6 C 0.17 2.48 1.63 -67.75 -0.11 2.37 16 7 H 0.07 1.20 6.44 -51.93 -0.33 0.86 16 8 C -0.17 -2.40 5.66 -26.59 -0.15 -2.55 16 9 C 0.06 0.75 6.84 37.21 0.25 1.01 16 10 O -0.39 -5.00 10.77 -35.23 -0.38 -5.38 16 11 C 0.07 0.77 6.13 37.20 0.23 1.00 16 12 C -0.13 -1.60 2.48 -90.48 -0.22 -1.82 16 13 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.14 -1.63 9.07 37.16 0.34 -1.29 16 15 C -0.17 -3.87 8.81 -39.77 -0.35 -4.22 16 16 C -0.12 -3.14 8.63 -39.26 -0.34 -3.48 16 17 C 0.08 2.06 5.56 -106.80 -0.59 1.47 16 18 C -0.46 -12.32 8.10 -37.87 -0.31 -12.63 16 19 H 0.07 1.91 6.88 -52.49 -0.36 1.55 16 20 C 0.07 1.91 5.14 -17.34 -0.09 1.82 16 21 N -0.81 -21.31 10.99 55.54 0.61 -20.70 16 22 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.67 8.08 -51.92 -0.42 0.25 16 28 H 0.06 1.34 6.78 -51.93 -0.35 0.99 16 29 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.38 5.92 8.57 -40.82 -0.35 5.57 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.24 7.72 -51.93 -0.40 0.84 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.82 6.04 -52.48 -0.32 1.51 16 41 H 0.12 3.14 6.22 -52.48 -0.33 2.81 16 42 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -27.72 330.80 -9.23 -36.95 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.62 Total: 9.59 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.56 Total: -26.55 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.37 Total: -33.67 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.38 Total: -5.38 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.72 -9.23 -36.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170822370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.725 kcal (2) G-P(sol) polarization free energy of solvation -27.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds