Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36363 * 120.07914 * 2 1 4 4 C 1.39548 * 120.15775 * 180.27156 * 3 2 1 5 5 N 1.38861 * 119.83994 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00048 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.54183 * 34.82327 * 6 5 4 8 8 C 1.53176 * 109.54171 * 274.55554 * 6 5 4 9 9 C 1.53095 * 109.16299 * 183.15071 * 8 6 5 10 10 O 1.42908 * 109.40970 * 57.61080 * 9 8 6 11 11 C 1.42897 * 114.09874 * 298.84003 * 10 9 8 12 12 C 1.53092 * 109.41597 * 61.16072 * 11 10 9 13 13 H 1.08998 * 109.57647 * 62.32988 * 12 11 10 14 14 C 1.52999 * 109.52337 * 182.48645 * 12 11 10 15 15 C 1.39580 * 120.31907 * 0.02562 * 4 3 2 16 16 C 1.36321 * 120.16140 * 359.97438 * 15 4 3 17 17 C 1.40863 * 120.08379 * 180.26740 * 2 1 3 18 18 C 1.41133 * 120.15523 * 359.75395 * 17 2 1 19 19 H 1.07998 * 119.99969 * 334.16783 * 18 17 2 20 20 C 1.39874 * 120.00349 * 154.17259 * 18 17 2 21 21 N 1.30901 * 119.99356 * 342.89014 * 20 18 17 22 22 Si 1.86790 * 120.00170 * 162.89294 * 20 18 17 23 23 H 1.48504 * 109.47514 * 94.63377 * 22 20 18 24 24 H 1.48502 * 109.47137 * 214.63306 * 22 20 18 25 25 H 1.48496 * 109.47615 * 334.63456 * 22 20 18 26 26 H 1.09001 * 109.47787 * 269.72976 * 1 2 3 27 27 H 1.09007 * 109.47299 * 29.73003 * 1 2 3 28 28 H 1.09006 * 109.46914 * 149.72641 * 1 2 3 29 29 H 1.07997 * 119.92108 * 0.24644 * 3 2 1 30 30 H 0.96998 * 119.99615 * 0.02562 * 5 4 3 31 31 H 1.09004 * 109.52354 * 303.05969 * 8 6 5 32 32 H 1.08999 * 109.52320 * 63.24649 * 8 6 5 33 33 H 1.08993 * 109.48155 * 297.63182 * 9 8 6 34 34 H 1.08993 * 109.48776 * 177.59446 * 9 8 6 35 35 H 1.08999 * 109.48013 * 301.17650 * 11 10 9 36 36 H 1.08996 * 109.49252 * 181.15222 * 11 10 9 37 37 H 1.08997 * 109.47529 * 179.68767 * 14 12 11 38 38 H 1.09002 * 109.47171 * 299.68316 * 14 12 11 39 39 H 1.08999 * 109.47572 * 59.68741 * 14 12 11 40 40 H 1.08007 * 119.92046 * 179.97438 * 15 4 3 41 41 H 1.08005 * 120.08306 * 179.97438 * 16 15 4 42 42 H 0.97005 * 119.99395 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1904 1.1800 0.0000 4 6 3.5858 1.1819 -0.0057 5 7 4.2751 2.3874 -0.0062 6 6 5.7401 2.3935 -0.0128 7 1 6.1056 1.5530 -0.6028 8 6 6.2594 2.2779 1.4236 9 6 7.7879 2.3643 1.4139 10 8 8.1902 3.5936 0.8064 11 6 7.7733 3.7365 -0.5529 12 6 6.2443 3.7052 -0.6223 13 1 5.8360 4.5472 -0.0633 14 6 5.7967 3.7958 -2.0825 15 6 4.2921 -0.0220 -0.0120 16 6 3.6221 -1.2092 -0.0121 17 6 2.2130 -1.2189 -0.0057 18 6 1.5125 -2.4441 -0.0062 19 1 0.5152 -2.4960 0.4050 20 6 2.1098 -3.5911 -0.5390 21 7 3.1503 -3.4818 -1.3258 22 14 1.4228 -5.2788 -0.1279 23 1 0.4751 -5.6999 -1.1909 24 1 2.5355 -6.2583 -0.0405 25 1 0.7116 -5.2200 1.1743 26 1 -0.3635 -0.0048 1.0276 27 1 -0.3634 0.8924 -0.5097 28 1 -0.3633 -0.8876 -0.5181 29 1 1.6504 2.1153 0.0040 30 1 3.7866 3.2253 -0.0022 31 1 5.8524 3.0911 2.0247 32 1 5.9513 1.3217 1.8465 33 1 8.1956 1.5278 0.8464 34 1 8.1608 2.3255 2.4373 35 1 8.1809 2.9180 -1.1462 36 1 8.1357 4.6862 -0.9466 37 1 4.7082 3.7679 -2.1313 38 1 6.1559 4.7295 -2.5154 39 1 6.2071 2.9547 -2.6412 40 1 5.3721 -0.0130 -0.0168 41 1 4.1698 -2.1400 -0.0174 42 1 3.5643 -4.2773 -1.6956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170822370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = -55.466496 kcal Electronic energy + Delta-G solvation = -21492.477884 eV Core-core repulsion = 18435.598907 eV Total energy + Delta-G solvation = -3056.878976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86260 -39.60131 -37.11335 -35.29577 -34.09053 -32.78808 -32.33433 -30.13587 -28.05508 -27.52084 -26.20130 -24.83567 -23.29018 -22.77852 -21.45041 -20.58336 -18.99817 -17.75835 -17.26640 -17.06364 -16.74913 -16.16213 -15.73631 -15.51400 -15.29318 -14.97228 -14.46123 -14.34010 -14.18320 -13.92921 -13.53466 -13.30860 -13.05796 -12.91639 -12.89748 -12.76716 -12.73087 -12.64809 -12.29676 -12.19435 -11.97732 -11.64794 -11.42599 -11.22254 -11.10406 -10.98188 -10.55630 -10.16709 -9.17796 -8.51172 -8.11003 -5.95491 1.11766 1.20707 1.40367 1.52367 1.60127 2.28212 2.79104 2.87634 2.98518 3.66141 3.80472 3.87797 3.93536 4.12058 4.25643 4.41226 4.47202 4.49326 4.50619 4.65359 4.67402 4.77187 4.77988 4.89661 4.94752 4.97245 5.05807 5.08481 5.13302 5.16613 5.26132 5.33511 5.34499 5.40019 5.53150 5.77469 5.93802 5.98910 6.21615 6.25535 6.46436 6.70931 6.91330 7.13848 7.18438 7.35063 8.51831 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.004371 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.874493 B = 6404.185179 C = 6940.158841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.167 4.167 3 C -0.170 4.170 4 C 0.120 3.880 5 N -0.741 5.741 6 C 0.164 3.836 7 H 0.055 0.945 8 C -0.166 4.166 9 C 0.065 3.935 10 O -0.395 6.395 11 C 0.067 3.933 12 C -0.123 4.123 13 H 0.084 0.916 14 C -0.139 4.139 15 C -0.180 4.180 16 C -0.142 4.142 17 C 0.036 3.964 18 C -0.495 4.495 19 H 0.072 0.928 20 C 0.031 3.969 21 N -0.845 5.845 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.272 1.272 25 H -0.261 1.261 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.113 0.887 30 H 0.394 0.606 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.942 11.764 1.209 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.169 4.169 3 C -0.192 4.192 4 C 0.021 3.979 5 N -0.375 5.375 6 C 0.058 3.942 7 H 0.073 0.927 8 C -0.205 4.205 9 C -0.012 4.012 10 O -0.314 6.314 11 C -0.010 4.010 12 C -0.142 4.142 13 H 0.103 0.897 14 C -0.196 4.196 15 C -0.202 4.202 16 C -0.163 4.163 17 C 0.033 3.967 18 C -0.526 4.526 19 H 0.090 0.910 20 C -0.180 4.180 21 N -0.474 5.474 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.185 1.185 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.366 11.699 1.151 13.873 hybrid contribution -0.621 -1.144 -0.089 1.305 sum 6.744 10.555 1.062 12.570 Atomic orbital electron populations 1.20397 0.91730 1.01035 1.00566 1.19756 0.95955 0.92661 1.08499 1.19959 0.92027 0.96954 1.10291 1.17403 0.90703 0.86068 1.03737 1.43918 1.03883 1.04177 1.85484 1.20767 0.81110 0.97574 0.94778 0.92734 1.22669 0.96989 1.02433 0.98449 1.22614 0.92841 0.86357 0.99417 1.87888 1.77171 1.39299 1.27025 1.22767 0.92070 1.03396 0.82777 1.21980 0.97292 0.97091 0.97852 0.89718 1.21673 1.01445 1.02264 0.94239 1.20168 0.97660 0.91947 1.10410 1.20837 0.94840 0.96229 1.04345 1.17680 0.92143 0.92824 0.94010 1.19556 1.02227 0.93796 1.37028 0.91004 1.26572 0.94682 1.04355 0.92377 1.69934 1.20997 1.32146 1.24313 0.85374 0.78661 0.77097 0.79633 1.19129 1.19663 1.18462 0.92751 0.92000 0.93272 0.86858 0.77100 0.91191 0.92238 0.92907 0.87420 0.92781 0.86497 0.92999 0.90395 0.93401 0.88372 0.88792 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.32 9.39 71.23 0.67 -2.65 16 2 C -0.17 -8.07 5.90 -19.66 -0.12 -8.19 16 3 C -0.17 -7.35 9.46 22.15 0.21 -7.14 16 4 C 0.12 5.03 6.65 38.67 0.26 5.29 16 5 N -0.74 -23.85 4.61 -317.98 -1.47 -25.32 16 6 C 0.16 4.58 1.63 45.11 0.07 4.66 16 7 H 0.05 1.76 6.44 -2.39 -0.02 1.74 16 8 C -0.17 -4.42 5.66 30.68 0.17 -4.25 16 9 C 0.06 1.46 6.84 72.01 0.49 1.96 16 10 O -0.40 -9.16 10.77 -148.98 -1.60 -10.76 16 11 C 0.07 1.30 6.13 72.01 0.44 1.74 16 12 C -0.12 -2.63 2.48 -10.70 -0.03 -2.66 16 13 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 14 C -0.14 -2.84 9.07 71.98 0.65 -2.19 16 15 C -0.18 -8.42 8.81 22.15 0.20 -8.22 16 16 C -0.14 -7.69 8.63 22.48 0.19 -7.50 16 17 C 0.04 1.99 5.56 -21.27 -0.12 1.87 16 18 C -0.49 -27.30 8.10 23.38 0.19 -27.11 16 19 H 0.07 3.83 6.88 -2.91 -0.02 3.81 16 20 C 0.03 1.65 5.14 85.23 0.44 2.09 16 21 N -0.85 -46.40 10.99 21.82 0.24 -46.17 16 22 Si 0.97 40.21 29.59 68.60 2.03 42.24 16 23 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 2.18 8.08 -2.38 -0.02 2.16 16 28 H 0.05 2.13 6.78 -2.38 -0.02 2.11 16 29 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.39 11.16 8.57 -92.71 -0.79 10.36 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.06 1.83 7.72 -2.39 -0.02 1.81 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.20 7.68 -2.39 -0.02 1.18 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 4.24 6.04 -2.91 -0.02 4.23 16 41 H 0.09 5.39 6.22 -2.91 -0.02 5.38 16 42 H 0.28 14.05 8.30 -92.70 -0.77 13.28 16 Total: -1.00 -61.39 330.80 3.14 -58.25 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.21 Total: 34.05 kcal Atomic # 6 Polarization: -56.02 SS G_CDS: 3.73 Total: -52.29 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -1.23 Total: -71.49 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.60 Total: -10.76 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -61.39 3.14 -58.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170822370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.787 kcal (2) G-P(sol) polarization free energy of solvation -61.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds