Wall clock time and date at job start Mon Mar 30 2020 02:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36361 * 120.08309 * 2 1 4 4 C 1.39545 * 120.15955 * 180.02562 * 3 2 1 5 5 N 1.38862 * 119.84104 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99851 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.61833 * 35.22394 * 6 5 4 8 8 C 1.53180 * 109.54195 * 274.99532 * 6 5 4 9 9 C 1.53090 * 109.21796 * 297.14733 * 8 6 5 10 10 O 1.42899 * 109.41475 * 302.36261 * 9 8 6 11 11 C 1.42903 * 114.10064 * 61.15552 * 10 9 8 12 12 C 1.53083 * 109.41582 * 298.84215 * 11 10 9 13 13 H 1.09001 * 109.52488 * 297.70433 * 12 11 10 14 14 C 1.53000 * 109.52194 * 177.57494 * 12 11 10 15 15 C 1.39590 * 120.31683 * 0.24554 * 4 3 2 16 16 C 1.36322 * 120.16148 * 359.49498 * 15 4 3 17 17 C 1.40869 * 120.08092 * 180.02562 * 2 1 3 18 18 C 1.41137 * 120.15386 * 359.96150 * 17 2 1 19 19 H 1.07997 * 120.00040 * 329.17890 * 18 17 2 20 20 C 1.39875 * 119.99893 * 149.18234 * 18 17 2 21 21 N 1.30903 * 119.99877 * 162.47340 * 20 18 17 22 22 Si 1.86796 * 119.99961 * 342.47589 * 20 18 17 23 23 H 1.48494 * 109.47532 * 95.37258 * 22 20 18 24 24 H 1.48503 * 109.46819 * 215.37471 * 22 20 18 25 25 H 1.48502 * 109.46988 * 335.36818 * 22 20 18 26 26 H 1.08999 * 109.46732 * 89.99892 * 1 2 3 27 27 H 1.08993 * 109.47234 * 210.00408 * 1 2 3 28 28 H 1.08996 * 109.47034 * 330.00183 * 1 2 3 29 29 H 1.08001 * 119.91667 * 359.97438 * 3 2 1 30 30 H 0.97002 * 119.99861 * 0.02562 * 5 4 3 31 31 H 1.09002 * 109.51820 * 177.21196 * 8 6 5 32 32 H 1.09002 * 109.52002 * 57.09213 * 8 6 5 33 33 H 1.08996 * 109.47801 * 62.34303 * 9 8 6 34 34 H 1.08998 * 109.47622 * 182.37578 * 9 8 6 35 35 H 1.09000 * 109.47766 * 58.82717 * 11 10 9 36 36 H 1.08998 * 109.48226 * 178.84508 * 11 10 9 37 37 H 1.08994 * 109.47357 * 60.00223 * 14 12 11 38 38 H 1.09000 * 109.47164 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.47299 * 300.00018 * 14 12 11 40 40 H 1.07995 * 119.91760 * 179.74317 * 15 4 3 41 41 H 1.07994 * 120.08103 * 180.27364 * 16 15 4 42 42 H 0.96993 * 120.00103 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1818 -0.0005 5 7 4.2753 2.3872 -0.0011 6 6 5.7403 2.3932 -0.0011 7 1 6.1097 1.5557 -0.5929 8 6 6.2532 2.2702 1.4371 9 6 5.7952 3.4896 2.2414 10 8 6.2744 4.6803 1.6133 11 6 5.7896 4.8740 0.2830 12 6 6.2474 3.7103 -0.6000 13 1 7.3363 3.6940 -0.6454 14 6 5.6793 3.8841 -2.0099 15 6 4.2922 -0.0223 -0.0062 16 6 3.6221 -1.2094 -0.0009 17 6 2.2131 -1.2190 -0.0005 18 6 1.5124 -2.4441 -0.0003 19 1 0.5474 -2.5142 0.4795 20 6 2.0679 -3.5676 -0.6213 21 7 1.6123 -4.7625 -0.3415 22 14 3.4600 -3.3629 -1.8499 23 1 4.7612 -3.5507 -1.1596 24 1 3.3212 -4.3745 -2.9282 25 1 3.4040 -2.0009 -2.4390 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6505 2.1152 -0.0004 30 1 3.7869 3.2253 -0.0007 31 1 7.3423 2.2249 1.4327 32 1 5.8527 1.3634 1.8903 33 1 4.7061 3.5118 2.2794 34 1 6.1932 3.4273 3.2542 35 1 4.7004 4.9143 0.2954 36 1 6.1834 5.8093 -0.1148 37 1 6.0370 4.8229 -2.4327 38 1 6.0054 3.0549 -2.6378 39 1 4.5903 3.8980 -1.9637 40 1 5.3721 -0.0133 -0.0108 41 1 4.1698 -2.1401 -0.0009 42 1 1.9972 -5.5415 -0.7724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170822371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:00 Heat of formation + Delta-G solvation = -35.968726 kcal Electronic energy + Delta-G solvation = -21817.854827 eV Core-core repulsion = 18761.821337 eV Total energy + Delta-G solvation = -3056.033490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99578 -38.14971 -35.70894 -33.67118 -32.76308 -31.53356 -31.15025 -28.82343 -26.87707 -26.26328 -24.69372 -23.93063 -22.24146 -21.37907 -20.28222 -18.46236 -17.41612 -16.87383 -16.13257 -15.72309 -15.51758 -14.99055 -14.58253 -14.22962 -13.96943 -13.69741 -13.14470 -12.89608 -12.71414 -12.44967 -12.39465 -12.25850 -12.03793 -11.79779 -11.66135 -11.43875 -11.17676 -11.13775 -10.96727 -10.72298 -10.58783 -10.29457 -10.18214 -9.81903 -9.50902 -9.32868 -9.16222 -8.65964 -7.60937 -6.75507 -6.59979 -4.15568 2.65434 2.79830 3.18806 3.28489 3.40316 3.82960 4.09763 4.10301 4.59909 4.62630 4.75394 4.86628 5.07044 5.14217 5.38657 5.41523 5.47329 5.48343 5.60864 5.73381 5.86039 5.89541 5.97030 6.00570 6.02171 6.09689 6.18867 6.21677 6.28710 6.44773 6.62728 6.66559 6.84753 6.95645 7.14137 7.15524 7.26361 7.46476 7.64716 7.90539 8.08463 8.30032 8.48311 8.55701 8.84491 8.99390 10.28692 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.005000 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.971881 B = 5599.107634 C = 5916.291192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.138 4.138 3 C -0.146 4.146 4 C 0.099 3.901 5 N -0.751 5.751 6 C 0.164 3.836 7 H 0.077 0.923 8 C -0.173 4.173 9 C 0.066 3.934 10 O -0.387 6.387 11 C 0.068 3.932 12 C -0.133 4.133 13 H 0.084 0.916 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.195 4.195 17 C 0.061 3.939 18 C -0.453 4.453 19 H 0.090 0.910 20 C 0.083 3.917 21 N -0.826 5.826 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.247 1.247 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.383 0.617 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 14.568 -0.542 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C -0.168 4.168 4 C 0.002 3.998 5 N -0.387 5.387 6 C 0.057 3.943 7 H 0.094 0.906 8 C -0.212 4.212 9 C -0.011 4.011 10 O -0.306 6.306 11 C -0.009 4.009 12 C -0.152 4.152 13 H 0.102 0.898 14 C -0.199 4.199 15 C -0.170 4.170 16 C -0.215 4.215 17 C 0.058 3.942 18 C -0.483 4.483 19 H 0.107 0.893 20 C -0.133 4.133 21 N -0.452 5.452 22 Si 0.733 3.267 23 H -0.201 1.201 24 H -0.222 1.222 25 H -0.170 1.170 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.217 0.783 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.995 14.322 -0.473 16.410 hybrid contribution 0.380 -0.139 -0.680 0.791 sum 8.375 14.183 -1.152 16.512 Atomic orbital electron populations 1.20460 0.93052 1.00572 1.00421 1.19352 0.94564 0.92331 1.07694 1.19790 0.91577 0.96673 1.08732 1.17245 0.90526 0.85135 1.06903 1.43972 1.02998 1.05076 1.86621 1.20665 0.82405 0.96658 0.94528 0.90552 1.22687 1.00968 0.99628 0.97932 1.22498 0.98812 0.83897 0.95889 1.87887 1.72234 1.42641 1.27803 1.22575 0.98149 0.97690 0.82520 1.22047 1.01325 0.95827 0.96010 0.89810 1.21689 1.01726 1.01377 0.95095 1.19960 0.97225 0.91725 1.08137 1.20627 0.94625 0.95912 1.10309 1.17497 0.91043 0.92813 0.92841 1.19276 1.05803 0.91550 1.31631 0.89262 1.26017 0.96462 0.94321 0.96455 1.69731 1.39666 0.99003 1.36835 0.86406 0.80659 0.79403 0.80223 1.20129 1.22229 1.17020 0.93190 0.91704 0.94335 0.89052 0.78267 0.91305 0.90070 0.92721 0.89408 0.93327 0.89204 0.92900 0.92263 0.91994 0.88927 0.88327 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.61 36.01 0.35 -1.42 16 2 C -0.14 -3.12 5.90 -104.30 -0.62 -3.73 16 3 C -0.15 -2.96 9.46 -39.77 -0.38 -3.33 16 4 C 0.10 1.92 6.65 -83.69 -0.56 1.36 16 5 N -0.75 -11.34 3.83 -51.78 -0.20 -11.54 16 6 C 0.16 2.19 1.99 -67.67 -0.13 2.06 16 7 H 0.08 1.12 6.46 -51.93 -0.34 0.79 16 8 C -0.17 -2.22 5.73 -26.59 -0.15 -2.37 16 9 C 0.07 0.80 6.68 37.20 0.25 1.05 16 10 O -0.39 -4.89 10.77 -35.23 -0.38 -5.27 16 11 C 0.07 0.72 5.95 37.20 0.22 0.94 16 12 C -0.13 -1.45 2.70 -90.41 -0.24 -1.69 16 13 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 14 C -0.14 -1.46 9.02 37.16 0.34 -1.13 16 15 C -0.15 -3.14 8.77 -39.77 -0.35 -3.49 16 16 C -0.19 -4.68 7.09 -39.26 -0.28 -4.96 16 17 C 0.06 1.55 5.08 -106.79 -0.54 1.01 16 18 C -0.45 -12.28 8.89 -37.87 -0.34 -12.62 16 19 H 0.09 2.53 6.54 -52.49 -0.34 2.18 16 20 C 0.08 2.23 5.41 -17.34 -0.09 2.14 16 21 N -0.83 -22.67 13.93 55.54 0.77 -21.90 16 22 Si 0.91 21.38 24.52 -169.99 -4.17 17.22 16 23 H -0.27 -6.33 6.72 56.52 0.38 -5.95 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.25 -5.97 6.85 56.52 0.39 -5.58 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.36 6.31 -51.93 -0.33 1.03 16 28 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.38 5.28 6.67 -40.82 -0.27 5.01 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.17 7.78 -51.93 -0.40 0.77 16 33 H 0.05 0.71 7.75 -51.93 -0.40 0.31 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.51 6.72 -51.93 -0.35 0.16 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.69 7.26 -51.93 -0.38 0.32 16 40 H 0.09 1.77 6.15 -52.49 -0.32 1.45 16 41 H 0.10 2.41 4.81 -52.49 -0.25 2.16 16 42 H 0.28 7.03 8.30 -40.82 -0.34 6.70 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -27.82 320.53 -8.03 -35.84 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.36 Total: 7.00 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -2.53 Total: -26.19 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.58 Total: -33.44 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.38 Total: -5.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.17 Total: 17.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.82 -8.03 -35.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170822371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.124 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds