Wall clock time and date at job start Mon Mar 30 2020 02:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36361 * 120.08309 * 2 1 4 4 C 1.39545 * 120.15955 * 180.02562 * 3 2 1 5 5 N 1.38862 * 119.84104 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99851 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.61833 * 35.22394 * 6 5 4 8 8 C 1.53180 * 109.54195 * 274.99532 * 6 5 4 9 9 C 1.53090 * 109.21796 * 297.14733 * 8 6 5 10 10 O 1.42899 * 109.41475 * 302.36261 * 9 8 6 11 11 C 1.42903 * 114.10064 * 61.15552 * 10 9 8 12 12 C 1.53083 * 109.41582 * 298.84215 * 11 10 9 13 13 H 1.09001 * 109.52488 * 297.70433 * 12 11 10 14 14 C 1.53000 * 109.52194 * 177.57494 * 12 11 10 15 15 C 1.39590 * 120.31683 * 0.24554 * 4 3 2 16 16 C 1.36322 * 120.16148 * 359.49498 * 15 4 3 17 17 C 1.40869 * 120.08092 * 180.02562 * 2 1 3 18 18 C 1.41137 * 120.15386 * 359.96150 * 17 2 1 19 19 H 1.07997 * 120.00040 * 329.17890 * 18 17 2 20 20 C 1.39875 * 119.99893 * 149.18234 * 18 17 2 21 21 N 1.30903 * 119.99877 * 162.47340 * 20 18 17 22 22 Si 1.86796 * 119.99961 * 342.47589 * 20 18 17 23 23 H 1.48494 * 109.47532 * 95.37258 * 22 20 18 24 24 H 1.48503 * 109.46819 * 215.37471 * 22 20 18 25 25 H 1.48502 * 109.46988 * 335.36818 * 22 20 18 26 26 H 1.08999 * 109.46732 * 89.99892 * 1 2 3 27 27 H 1.08993 * 109.47234 * 210.00408 * 1 2 3 28 28 H 1.08996 * 109.47034 * 330.00183 * 1 2 3 29 29 H 1.08001 * 119.91667 * 359.97438 * 3 2 1 30 30 H 0.97002 * 119.99861 * 0.02562 * 5 4 3 31 31 H 1.09002 * 109.51820 * 177.21196 * 8 6 5 32 32 H 1.09002 * 109.52002 * 57.09213 * 8 6 5 33 33 H 1.08996 * 109.47801 * 62.34303 * 9 8 6 34 34 H 1.08998 * 109.47622 * 182.37578 * 9 8 6 35 35 H 1.09000 * 109.47766 * 58.82717 * 11 10 9 36 36 H 1.08998 * 109.48226 * 178.84508 * 11 10 9 37 37 H 1.08994 * 109.47357 * 60.00223 * 14 12 11 38 38 H 1.09000 * 109.47164 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.47299 * 300.00018 * 14 12 11 40 40 H 1.07995 * 119.91760 * 179.74317 * 15 4 3 41 41 H 1.07994 * 120.08103 * 180.27364 * 16 15 4 42 42 H 0.96993 * 120.00103 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1818 -0.0005 5 7 4.2753 2.3872 -0.0011 6 6 5.7403 2.3932 -0.0011 7 1 6.1097 1.5557 -0.5929 8 6 6.2532 2.2702 1.4371 9 6 5.7952 3.4896 2.2414 10 8 6.2744 4.6803 1.6133 11 6 5.7896 4.8740 0.2830 12 6 6.2474 3.7103 -0.6000 13 1 7.3363 3.6940 -0.6454 14 6 5.6793 3.8841 -2.0099 15 6 4.2922 -0.0223 -0.0062 16 6 3.6221 -1.2094 -0.0009 17 6 2.2131 -1.2190 -0.0005 18 6 1.5124 -2.4441 -0.0003 19 1 0.5474 -2.5142 0.4795 20 6 2.0679 -3.5676 -0.6213 21 7 1.6123 -4.7625 -0.3415 22 14 3.4600 -3.3629 -1.8499 23 1 4.7612 -3.5507 -1.1596 24 1 3.3212 -4.3745 -2.9282 25 1 3.4040 -2.0009 -2.4390 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6505 2.1152 -0.0004 30 1 3.7869 3.2253 -0.0007 31 1 7.3423 2.2249 1.4327 32 1 5.8527 1.3634 1.8903 33 1 4.7061 3.5118 2.2794 34 1 6.1932 3.4273 3.2542 35 1 4.7004 4.9143 0.2954 36 1 6.1834 5.8093 -0.1148 37 1 6.0370 4.8229 -2.4327 38 1 6.0054 3.0549 -2.6378 39 1 4.5903 3.8980 -1.9637 40 1 5.3721 -0.0133 -0.0108 41 1 4.1698 -2.1401 -0.0009 42 1 1.9972 -5.5415 -0.7724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170822371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:59 Heat of formation + Delta-G solvation = -52.064182 kcal Electronic energy + Delta-G solvation = -21818.552778 eV Core-core repulsion = 18761.821337 eV Total energy + Delta-G solvation = -3056.731441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10459 -39.73611 -36.98221 -35.28006 -34.15183 -32.93508 -32.65852 -30.43500 -28.15992 -27.48777 -25.89777 -25.54899 -23.36579 -22.98708 -21.68606 -19.79137 -19.27171 -18.26206 -17.09821 -16.97029 -16.77465 -16.61771 -15.76174 -15.58985 -15.40849 -15.09742 -14.58986 -14.48611 -14.21844 -13.98434 -13.85176 -13.37655 -13.20285 -13.05619 -12.94928 -12.85832 -12.73062 -12.59091 -12.49321 -12.02257 -11.97514 -11.68522 -11.59729 -11.27872 -11.20724 -10.95989 -10.48803 -10.24491 -9.33793 -8.72339 -8.24898 -6.11264 0.88407 0.99658 1.27927 1.41963 1.50590 2.18734 2.74545 2.77829 2.96513 3.58756 3.67759 3.87153 3.90580 4.05548 4.25274 4.29157 4.34342 4.44920 4.50708 4.63198 4.66640 4.76505 4.78808 4.83265 4.92590 4.97001 4.98963 5.03080 5.09683 5.15010 5.16486 5.20444 5.23541 5.36714 5.42418 5.53704 5.73678 5.87754 6.06076 6.24985 6.31170 6.49860 6.70944 6.94590 7.02886 7.20501 8.37761 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.005000 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.971881 B = 5599.107634 C = 5916.291192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.139 4.139 3 C -0.156 4.156 4 C 0.135 3.865 5 N -0.736 5.736 6 C 0.157 3.843 7 H 0.066 0.934 8 C -0.169 4.169 9 C 0.068 3.932 10 O -0.396 6.396 11 C 0.064 3.936 12 C -0.123 4.123 13 H 0.094 0.906 14 C -0.139 4.139 15 C -0.165 4.165 16 C -0.200 4.200 17 C 0.024 3.976 18 C -0.479 4.479 19 H 0.058 0.942 20 C 0.042 3.958 21 N -0.874 5.874 22 Si 0.959 3.041 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.256 1.256 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.395 0.605 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.556 18.270 -1.124 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C -0.178 4.178 4 C 0.035 3.965 5 N -0.371 5.371 6 C 0.051 3.949 7 H 0.084 0.916 8 C -0.209 4.209 9 C -0.009 4.009 10 O -0.315 6.315 11 C -0.013 4.013 12 C -0.142 4.142 13 H 0.112 0.888 14 C -0.197 4.197 15 C -0.188 4.188 16 C -0.220 4.220 17 C 0.021 3.979 18 C -0.510 4.510 19 H 0.076 0.924 20 C -0.168 4.168 21 N -0.503 5.503 22 Si 0.784 3.216 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.180 1.180 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.142 0.858 30 H 0.231 0.769 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.812 18.076 -1.052 20.594 hybrid contribution -0.096 -0.939 -0.431 1.038 sum 9.716 17.137 -1.484 19.755 Atomic orbital electron populations 1.20463 0.91648 1.01117 1.01065 1.19745 0.95998 0.92336 1.06017 1.20090 0.92079 0.97143 1.08461 1.17398 0.90618 0.86158 1.02299 1.44025 1.04067 1.04087 1.84883 1.20859 0.80895 0.98061 0.95075 0.91602 1.22630 1.01759 0.99178 0.97288 1.22477 0.98333 0.83593 0.96457 1.87893 1.72420 1.42471 1.28731 1.22744 0.98474 0.98410 0.81626 1.21986 1.01846 0.94237 0.96163 0.88792 1.21670 1.01148 1.02255 0.94581 1.20134 0.98389 0.91372 1.08865 1.20686 0.94307 0.96718 1.10318 1.17638 0.91815 0.93104 0.95351 1.19260 1.05263 0.93249 1.33274 0.92408 1.26611 0.98501 0.93984 0.97682 1.69778 1.41952 0.99632 1.38972 0.85584 0.78692 0.78747 0.78564 1.19342 1.21263 1.17960 0.92431 0.93772 0.91120 0.85762 0.76859 0.89985 0.91885 0.93519 0.88302 0.93055 0.87033 0.90706 0.93152 0.92773 0.86914 0.89428 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.40 9.61 71.24 0.68 -2.72 16 2 C -0.14 -6.20 5.90 -19.66 -0.12 -6.32 16 3 C -0.16 -5.88 9.46 22.15 0.21 -5.67 16 4 C 0.14 4.86 6.65 38.67 0.26 5.12 16 5 N -0.74 -19.59 3.83 -317.74 -1.22 -20.81 16 6 C 0.16 3.67 1.99 45.16 0.09 3.76 16 7 H 0.07 1.73 6.46 -2.39 -0.02 1.71 16 8 C -0.17 -3.85 5.73 30.68 0.18 -3.67 16 9 C 0.07 1.45 6.68 72.01 0.48 1.93 16 10 O -0.40 -8.51 10.77 -148.98 -1.60 -10.12 16 11 C 0.06 1.09 5.95 72.01 0.43 1.51 16 12 C -0.12 -2.18 2.70 -10.66 -0.03 -2.21 16 13 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 14 C -0.14 -2.33 9.02 71.98 0.65 -1.68 16 15 C -0.17 -6.71 8.77 22.15 0.19 -6.52 16 16 C -0.20 -9.64 7.09 22.48 0.16 -9.49 16 17 C 0.02 1.24 5.08 -21.27 -0.11 1.13 16 18 C -0.48 -27.39 8.89 23.38 0.21 -27.18 16 19 H 0.06 3.53 6.54 -2.91 -0.02 3.51 16 20 C 0.04 2.38 5.41 85.23 0.46 2.84 16 21 N -0.87 -50.53 13.93 21.82 0.30 -50.23 16 22 Si 0.96 45.35 24.52 68.60 1.68 47.03 16 23 H -0.27 -12.13 6.72 99.48 0.67 -11.46 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.26 -12.27 6.85 99.48 0.68 -11.58 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.04 1.91 6.31 -2.39 -0.02 1.90 16 28 H 0.07 2.28 8.08 -2.39 -0.02 2.27 16 29 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.40 9.17 6.67 -92.71 -0.62 8.55 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.68 7.78 -2.39 -0.02 1.66 16 33 H 0.05 1.07 7.75 -2.39 -0.02 1.05 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 0.85 6.72 -2.39 -0.02 0.83 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.99 7.26 -2.39 -0.02 0.98 16 40 H 0.11 4.08 6.15 -2.91 -0.02 4.06 16 41 H 0.09 4.34 4.81 -2.91 -0.01 4.33 16 42 H 0.28 15.02 8.30 -92.71 -0.77 14.25 16 Total: -1.00 -62.26 320.53 3.25 -59.01 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.34 Total: 24.27 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 3.74 Total: -49.16 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -0.91 Total: -71.03 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -1.60 Total: -10.12 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.68 Total: 47.03 kcal Total: -62.26 3.25 -59.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170822371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.949 kcal (2) G-P(sol) polarization free energy of solvation -62.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds