Wall clock time and date at job start Mon Mar 30 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.36349 * 120.08005 * 2 1 4 4 C 1.39546 * 120.15922 * 180.25335 * 3 2 1 5 5 N 1.38860 * 119.84358 * 179.76172 * 4 3 2 6 6 C 1.46501 * 120.00149 * 179.72309 * 5 4 3 7 7 H 1.09000 * 109.54450 * 325.17553 * 6 5 4 8 8 C 1.53174 * 109.61431 * 85.40227 * 6 5 4 9 9 C 1.53096 * 109.16325 * 176.89392 * 8 6 5 10 10 O 1.42907 * 109.41041 * 302.38967 * 9 8 6 11 11 C 1.42904 * 114.15718 * 61.12694 * 10 9 8 12 12 C 1.53095 * 109.40952 * 298.93601 * 11 10 9 13 13 H 1.08992 * 109.52853 * 297.57561 * 12 11 10 14 14 C 1.52999 * 109.52294 * 177.44445 * 12 11 10 15 15 C 1.39579 * 120.31746 * 359.48258 * 4 3 2 16 16 C 1.36326 * 120.15989 * 0.25533 * 15 4 3 17 17 C 1.40865 * 120.07885 * 179.74163 * 2 1 3 18 18 C 1.41133 * 120.15923 * 359.97438 * 17 2 1 19 19 H 1.08003 * 120.00155 * 333.69237 * 18 17 2 20 20 C 1.39861 * 120.00342 * 153.69726 * 18 17 2 21 21 N 1.30905 * 120.00018 * 343.76557 * 20 18 17 22 22 Si 1.86800 * 120.00485 * 163.76278 * 20 18 17 23 23 H 1.48505 * 109.46876 * 89.99982 * 22 20 18 24 24 H 1.48498 * 109.47481 * 209.99946 * 22 20 18 25 25 H 1.48501 * 109.47007 * 330.00300 * 22 20 18 26 26 H 1.08995 * 109.46999 * 270.25916 * 1 2 3 27 27 H 1.08999 * 109.46927 * 30.26381 * 1 2 3 28 28 H 1.08998 * 109.46590 * 150.25769 * 1 2 3 29 29 H 1.07999 * 119.92322 * 359.97438 * 3 2 1 30 30 H 0.97000 * 119.99958 * 359.72972 * 5 4 3 31 31 H 1.09003 * 109.52096 * 296.79490 * 8 6 5 32 32 H 1.08998 * 109.52789 * 56.98608 * 8 6 5 33 33 H 1.08997 * 109.47993 * 62.36595 * 9 8 6 34 34 H 1.08996 * 109.48446 * 182.40683 * 9 8 6 35 35 H 1.09000 * 109.53824 * 178.92549 * 11 10 9 36 36 H 1.08999 * 109.43157 * 58.88596 * 11 10 9 37 37 H 1.09007 * 109.47435 * 300.13158 * 14 12 11 38 38 H 1.09002 * 109.47191 * 180.12839 * 14 12 11 39 39 H 1.08998 * 109.46987 * 60.13098 * 14 12 11 40 40 H 1.08002 * 119.92687 * 180.27978 * 15 4 3 41 41 H 1.08004 * 120.08239 * 179.97438 * 16 15 4 42 42 H 0.96994 * 120.00499 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1818 -0.0053 5 7 4.2753 2.3872 -0.0103 6 6 5.7403 2.3933 -0.0098 7 1 6.1082 1.5541 0.5806 8 6 6.2555 2.2735 -1.4473 9 6 7.7840 2.3589 -1.4421 10 8 8.1889 3.5896 -0.8389 11 6 7.7759 3.7380 0.5210 12 6 6.2470 3.7064 0.5948 13 1 5.8378 4.5471 0.0347 14 6 5.8035 3.8012 2.0560 15 6 4.2922 -0.0221 0.0002 16 6 3.6221 -1.2093 0.0056 17 6 2.2131 -1.2189 0.0055 18 6 1.5125 -2.4441 0.0116 19 1 0.5168 -2.4947 0.4267 20 6 2.1077 -3.5927 -0.5199 21 7 3.1556 -3.4870 -1.2973 22 14 1.4075 -5.2778 -0.1205 23 1 0.3838 -5.6411 -1.1331 24 1 2.4992 -6.2843 -0.1372 25 1 0.7826 -5.2476 1.2263 26 1 -0.3633 0.0046 1.0276 27 1 -0.3633 0.8876 -0.5179 28 1 -0.3632 -0.8923 -0.5098 29 1 1.6506 2.1152 -0.0004 30 1 3.7868 3.2252 -0.0140 31 1 5.9456 1.3163 -1.8667 32 1 5.8474 3.0853 -2.0494 33 1 8.1928 1.5237 -0.8734 34 1 8.1540 2.3172 -2.4665 35 1 8.1389 4.6891 0.9105 36 1 8.1854 2.9215 1.1156 37 1 6.2132 2.9601 2.6154 38 1 4.7150 3.7763 2.1077 39 1 6.1664 4.7347 2.4860 40 1 5.3722 -0.0132 0.0006 41 1 4.1699 -2.1401 0.0094 42 1 3.5687 -4.2836 -1.6656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170822373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:03 Heat of formation + Delta-G solvation = -40.642337 kcal Electronic energy + Delta-G solvation = -21495.350839 eV Core-core repulsion = 18439.114686 eV Total energy + Delta-G solvation = -3056.236153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.70182 -37.94440 -35.72701 -33.66874 -32.69022 -31.41513 -30.66148 -28.42956 -26.78970 -26.11187 -24.56138 -23.45058 -22.19699 -21.03375 -20.13759 -19.00924 -17.09670 -16.36133 -16.15055 -15.82010 -15.04280 -14.82966 -14.62314 -14.14679 -13.78612 -13.50399 -12.97299 -12.93165 -12.52452 -12.50884 -12.11126 -11.99590 -11.69455 -11.54585 -11.48214 -11.16499 -11.10613 -11.02427 -10.94685 -10.76698 -10.57914 -10.35784 -10.15757 -9.63089 -9.52384 -9.21820 -9.17213 -8.44922 -7.33064 -6.62372 -6.35684 -4.02561 2.90809 3.06692 3.14520 3.19173 3.35348 3.84935 4.05543 4.23086 4.69920 4.75324 4.85819 4.95230 5.19690 5.27458 5.43433 5.50330 5.56052 5.67843 5.70426 5.75760 5.85391 5.99113 6.07383 6.17908 6.24969 6.26899 6.29925 6.45000 6.48789 6.71484 6.74277 6.92807 7.03909 7.17723 7.23309 7.36875 7.62537 7.75709 7.82871 8.15469 8.32338 8.50050 8.70671 8.80377 9.07276 9.16554 10.38826 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.004416 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.879509 B = 6338.423754 C = 7007.077262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.158 4.158 4 C 0.099 3.901 5 N -0.753 5.753 6 C 0.170 3.830 7 H 0.072 0.928 8 C -0.173 4.173 9 C 0.062 3.938 10 O -0.387 6.387 11 C 0.070 3.930 12 C -0.133 4.133 13 H 0.077 0.923 14 C -0.141 4.141 15 C -0.169 4.169 16 C -0.120 4.120 17 C 0.078 3.922 18 C -0.463 4.463 19 H 0.074 0.926 20 C 0.075 3.925 21 N -0.810 5.810 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.263 1.263 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.383 0.617 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 9.891 2.581 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.002 3.998 5 N -0.386 5.386 6 C 0.063 3.937 7 H 0.090 0.910 8 C -0.212 4.212 9 C -0.015 4.015 10 O -0.305 6.305 11 C -0.008 4.008 12 C -0.153 4.153 13 H 0.096 0.904 14 C -0.199 4.199 15 C -0.191 4.191 16 C -0.140 4.140 17 C 0.075 3.925 18 C -0.494 4.494 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.437 5.437 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.187 1.187 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.216 0.784 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.038 9.777 2.354 12.274 hybrid contribution -0.607 -0.763 0.110 0.981 sum 6.432 9.013 2.463 11.344 Atomic orbital electron populations 1.20414 0.93726 1.00492 0.99562 1.19309 0.94142 0.92763 1.09766 1.19644 0.91529 0.96392 1.10479 1.17311 0.90545 0.85098 1.06831 1.43887 1.02765 1.05210 1.86755 1.20593 0.82661 0.96258 0.94236 0.90969 1.22770 0.95413 1.03705 0.99327 1.22606 0.94385 0.86123 0.98371 1.87884 1.77200 1.39271 1.26193 1.22605 0.92972 1.01808 0.83396 1.22054 0.96583 0.98939 0.97693 0.90422 1.21695 1.02331 1.01182 0.94652 1.20081 0.96971 0.92025 1.10000 1.20912 0.94643 0.96029 1.02427 1.17342 0.91607 0.91598 0.91990 1.19347 1.01999 0.92550 1.35530 0.90784 1.25786 0.94416 1.00848 0.92978 1.69844 1.19333 1.30981 1.23570 0.86450 0.79266 0.81787 0.79959 1.19799 1.20396 1.18732 0.94058 0.94547 0.91944 0.89692 0.78447 0.90059 0.91349 0.93165 0.88998 0.89003 0.93115 0.92580 0.91700 0.92974 0.89542 0.86520 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.39 36.01 0.34 -1.45 16 2 C -0.16 -3.81 5.90 -104.30 -0.62 -4.42 16 3 C -0.16 -3.51 9.46 -39.77 -0.38 -3.89 16 4 C 0.10 2.10 6.65 -83.69 -0.56 1.55 16 5 N -0.75 -12.73 4.62 -51.85 -0.24 -12.96 16 6 C 0.17 2.49 1.63 -67.74 -0.11 2.38 16 7 H 0.07 1.17 6.44 -51.93 -0.33 0.83 16 8 C -0.17 -2.48 5.67 -26.59 -0.15 -2.63 16 9 C 0.06 0.78 6.85 37.21 0.25 1.03 16 10 O -0.39 -5.05 10.76 -35.23 -0.38 -5.43 16 11 C 0.07 0.77 6.13 37.21 0.23 1.00 16 12 C -0.13 -1.59 2.48 -90.48 -0.22 -1.81 16 13 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.14 -1.57 9.07 37.16 0.34 -1.23 16 15 C -0.17 -3.88 8.81 -39.77 -0.35 -4.23 16 16 C -0.12 -3.11 8.62 -39.26 -0.34 -3.45 16 17 C 0.08 2.06 5.56 -106.80 -0.59 1.46 16 18 C -0.46 -12.32 8.09 -37.88 -0.31 -12.63 16 19 H 0.07 1.90 6.89 -52.48 -0.36 1.54 16 20 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16 21 N -0.81 -21.35 10.97 55.54 0.61 -20.74 16 22 Si 0.90 19.13 29.59 -169.99 -5.03 14.10 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.06 1.35 6.78 -51.93 -0.35 0.99 16 29 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.38 5.91 8.57 -40.82 -0.35 5.56 16 31 H 0.08 1.33 7.71 -51.93 -0.40 0.93 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.79 7.68 -51.93 -0.40 0.40 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 1.82 6.04 -52.49 -0.32 1.51 16 41 H 0.12 3.15 6.23 -52.48 -0.33 2.82 16 42 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -27.70 330.79 -9.23 -36.93 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.62 Total: 9.62 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -2.55 Total: -26.50 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.37 Total: -33.70 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.38 Total: -5.43 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.70 -9.23 -36.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170822373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.709 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds