Wall clock time and date at job start Mon Mar 30 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.36349 * 120.08005 * 2 1 4 4 C 1.39546 * 120.15922 * 180.25335 * 3 2 1 5 5 N 1.38860 * 119.84358 * 179.76172 * 4 3 2 6 6 C 1.46501 * 120.00149 * 179.72309 * 5 4 3 7 7 H 1.09000 * 109.54450 * 325.17553 * 6 5 4 8 8 C 1.53174 * 109.61431 * 85.40227 * 6 5 4 9 9 C 1.53096 * 109.16325 * 176.89392 * 8 6 5 10 10 O 1.42907 * 109.41041 * 302.38967 * 9 8 6 11 11 C 1.42904 * 114.15718 * 61.12694 * 10 9 8 12 12 C 1.53095 * 109.40952 * 298.93601 * 11 10 9 13 13 H 1.08992 * 109.52853 * 297.57561 * 12 11 10 14 14 C 1.52999 * 109.52294 * 177.44445 * 12 11 10 15 15 C 1.39579 * 120.31746 * 359.48258 * 4 3 2 16 16 C 1.36326 * 120.15989 * 0.25533 * 15 4 3 17 17 C 1.40865 * 120.07885 * 179.74163 * 2 1 3 18 18 C 1.41133 * 120.15923 * 359.97438 * 17 2 1 19 19 H 1.08003 * 120.00155 * 333.69237 * 18 17 2 20 20 C 1.39861 * 120.00342 * 153.69726 * 18 17 2 21 21 N 1.30905 * 120.00018 * 343.76557 * 20 18 17 22 22 Si 1.86800 * 120.00485 * 163.76278 * 20 18 17 23 23 H 1.48505 * 109.46876 * 89.99982 * 22 20 18 24 24 H 1.48498 * 109.47481 * 209.99946 * 22 20 18 25 25 H 1.48501 * 109.47007 * 330.00300 * 22 20 18 26 26 H 1.08995 * 109.46999 * 270.25916 * 1 2 3 27 27 H 1.08999 * 109.46927 * 30.26381 * 1 2 3 28 28 H 1.08998 * 109.46590 * 150.25769 * 1 2 3 29 29 H 1.07999 * 119.92322 * 359.97438 * 3 2 1 30 30 H 0.97000 * 119.99958 * 359.72972 * 5 4 3 31 31 H 1.09003 * 109.52096 * 296.79490 * 8 6 5 32 32 H 1.08998 * 109.52789 * 56.98608 * 8 6 5 33 33 H 1.08997 * 109.47993 * 62.36595 * 9 8 6 34 34 H 1.08996 * 109.48446 * 182.40683 * 9 8 6 35 35 H 1.09000 * 109.53824 * 178.92549 * 11 10 9 36 36 H 1.08999 * 109.43157 * 58.88596 * 11 10 9 37 37 H 1.09007 * 109.47435 * 300.13158 * 14 12 11 38 38 H 1.09002 * 109.47191 * 180.12839 * 14 12 11 39 39 H 1.08998 * 109.46987 * 60.13098 * 14 12 11 40 40 H 1.08002 * 119.92687 * 180.27978 * 15 4 3 41 41 H 1.08004 * 120.08239 * 179.97438 * 16 15 4 42 42 H 0.96994 * 120.00499 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1818 -0.0053 5 7 4.2753 2.3872 -0.0103 6 6 5.7403 2.3933 -0.0098 7 1 6.1082 1.5541 0.5806 8 6 6.2555 2.2735 -1.4473 9 6 7.7840 2.3589 -1.4421 10 8 8.1889 3.5896 -0.8389 11 6 7.7759 3.7380 0.5210 12 6 6.2470 3.7064 0.5948 13 1 5.8378 4.5471 0.0347 14 6 5.8035 3.8012 2.0560 15 6 4.2922 -0.0221 0.0002 16 6 3.6221 -1.2093 0.0056 17 6 2.2131 -1.2189 0.0055 18 6 1.5125 -2.4441 0.0116 19 1 0.5168 -2.4947 0.4267 20 6 2.1077 -3.5927 -0.5199 21 7 3.1556 -3.4870 -1.2973 22 14 1.4075 -5.2778 -0.1205 23 1 0.3838 -5.6411 -1.1331 24 1 2.4992 -6.2843 -0.1372 25 1 0.7826 -5.2476 1.2263 26 1 -0.3633 0.0046 1.0276 27 1 -0.3633 0.8876 -0.5179 28 1 -0.3632 -0.8923 -0.5098 29 1 1.6506 2.1152 -0.0004 30 1 3.7868 3.2252 -0.0140 31 1 5.9456 1.3163 -1.8667 32 1 5.8474 3.0853 -2.0494 33 1 8.1928 1.5237 -0.8734 34 1 8.1540 2.3172 -2.4665 35 1 8.1389 4.6891 0.9105 36 1 8.1854 2.9215 1.1156 37 1 6.2132 2.9601 2.6154 38 1 4.7150 3.7763 2.1077 39 1 6.1664 4.7347 2.4860 40 1 5.3722 -0.0132 0.0006 41 1 4.1699 -2.1401 0.0094 42 1 3.5687 -4.2836 -1.6656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170822373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:03 Heat of formation + Delta-G solvation = -55.440079 kcal Electronic energy + Delta-G solvation = -21495.992517 eV Core-core repulsion = 18439.114686 eV Total energy + Delta-G solvation = -3056.877831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86234 -39.60217 -37.11328 -35.29078 -34.08664 -32.79005 -32.33662 -30.13447 -28.05340 -27.51560 -26.20194 -24.83685 -23.29081 -22.77800 -21.44976 -20.58409 -18.99466 -17.75961 -17.26723 -17.06161 -16.75251 -16.15992 -15.73388 -15.51432 -15.29393 -14.97310 -14.47819 -14.33719 -14.16922 -13.90325 -13.55049 -13.30352 -13.04924 -12.93404 -12.86304 -12.78639 -12.72967 -12.68259 -12.26046 -12.17944 -11.96286 -11.68605 -11.41379 -11.22331 -11.10869 -10.99981 -10.54415 -10.15842 -9.17841 -8.50178 -8.10843 -5.95776 1.11974 1.20904 1.40422 1.52056 1.60194 2.28438 2.78592 2.88266 2.98223 3.66290 3.80470 3.87725 3.93708 4.11557 4.25217 4.41090 4.46932 4.49457 4.50753 4.65002 4.68122 4.77154 4.78004 4.90101 4.95089 4.97178 5.05820 5.08755 5.13424 5.16831 5.26419 5.33894 5.34672 5.40215 5.53175 5.77524 5.93963 5.98884 6.21741 6.25541 6.46498 6.71006 6.91311 7.14104 7.18372 7.34908 8.52696 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.004416 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.879509 B = 6338.423754 C = 7007.077262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.166 4.166 3 C -0.171 4.171 4 C 0.121 3.879 5 N -0.741 5.741 6 C 0.165 3.835 7 H 0.057 0.943 8 C -0.167 4.167 9 C 0.066 3.934 10 O -0.396 6.396 11 C 0.066 3.934 12 C -0.123 4.123 13 H 0.083 0.917 14 C -0.138 4.138 15 C -0.180 4.180 16 C -0.141 4.141 17 C 0.036 3.964 18 C -0.495 4.495 19 H 0.072 0.928 20 C 0.031 3.969 21 N -0.846 5.846 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.272 1.272 25 H -0.261 1.261 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.114 0.886 30 H 0.395 0.605 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 11.802 3.131 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.168 4.168 3 C -0.193 4.193 4 C 0.022 3.978 5 N -0.375 5.375 6 C 0.059 3.941 7 H 0.075 0.925 8 C -0.207 4.207 9 C -0.011 4.011 10 O -0.314 6.314 11 C -0.010 4.010 12 C -0.142 4.142 13 H 0.101 0.899 14 C -0.195 4.195 15 C -0.202 4.202 16 C -0.161 4.161 17 C 0.033 3.967 18 C -0.526 4.526 19 H 0.090 0.910 20 C -0.180 4.180 21 N -0.475 5.475 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.185 1.185 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.229 0.771 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.354 11.736 2.907 14.151 hybrid contribution -0.631 -1.144 -0.050 1.307 sum 6.724 10.592 2.857 12.867 Atomic orbital electron populations 1.20399 0.91724 1.01031 1.00588 1.19770 0.95969 0.92672 1.08387 1.19956 0.92024 0.96964 1.10338 1.17406 0.90708 0.86067 1.03658 1.43920 1.03888 1.04182 1.85461 1.20760 0.81102 0.97702 0.94565 0.92461 1.22677 0.97110 1.02204 0.98712 1.22593 0.92719 0.86368 0.99429 1.87883 1.77198 1.39189 1.27168 1.22786 0.92117 1.03441 0.82695 1.21982 0.97280 0.96949 0.98017 0.89881 1.21669 1.01510 1.02334 0.94020 1.20171 0.97665 0.91946 1.10454 1.20843 0.94866 0.96217 1.04208 1.17681 0.92147 0.92824 0.94038 1.19549 1.02365 0.93720 1.36970 0.91005 1.26568 0.94737 1.04311 0.92409 1.69924 1.20810 1.32045 1.24737 0.85382 0.78630 0.77041 0.79680 1.19083 1.19706 1.18488 0.92689 0.92029 0.93276 0.86850 0.77096 0.92610 0.91377 0.92794 0.87620 0.86452 0.92636 0.93174 0.92904 0.90434 0.88367 0.88770 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.32 9.39 71.24 0.67 -2.65 16 2 C -0.17 -8.03 5.90 -19.66 -0.12 -8.15 16 3 C -0.17 -7.37 9.46 22.14 0.21 -7.16 16 4 C 0.12 5.06 6.65 38.67 0.26 5.32 16 5 N -0.74 -23.84 4.62 -317.97 -1.47 -25.31 16 6 C 0.17 4.61 1.63 45.11 0.07 4.68 16 7 H 0.06 1.80 6.44 -2.39 -0.02 1.79 16 8 C -0.17 -4.65 5.67 30.68 0.17 -4.47 16 9 C 0.07 1.54 6.85 72.01 0.49 2.03 16 10 O -0.40 -9.28 10.76 -148.98 -1.60 -10.89 16 11 C 0.07 1.27 6.13 72.01 0.44 1.71 16 12 C -0.12 -2.59 2.48 -10.70 -0.03 -2.62 16 13 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 14 C -0.14 -2.68 9.07 71.98 0.65 -2.02 16 15 C -0.18 -8.44 8.81 22.15 0.20 -8.24 16 16 C -0.14 -7.63 8.62 22.48 0.19 -7.43 16 17 C 0.04 1.97 5.56 -21.27 -0.12 1.85 16 18 C -0.49 -27.29 8.09 23.37 0.19 -27.10 16 19 H 0.07 3.82 6.89 -2.91 -0.02 3.80 16 20 C 0.03 1.62 5.15 85.22 0.44 2.06 16 21 N -0.85 -46.52 10.97 21.81 0.24 -46.28 16 22 Si 0.97 40.24 29.59 68.60 2.03 42.27 16 23 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 28 H 0.05 2.13 6.78 -2.39 -0.02 2.11 16 29 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 30 H 0.39 11.15 8.57 -92.71 -0.79 10.36 16 31 H 0.06 1.83 7.71 -2.39 -0.02 1.81 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.05 1.16 7.68 -2.39 -0.02 1.14 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 4.24 6.04 -2.91 -0.02 4.23 16 41 H 0.09 5.41 6.23 -2.91 -0.02 5.39 16 42 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 Total: -1.00 -61.45 330.79 3.14 -58.31 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.22 Total: 34.08 kcal Atomic # 6 Polarization: -55.92 SS G_CDS: 3.73 Total: -52.19 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.23 Total: -71.59 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -1.60 Total: -10.89 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -61.45 3.14 -58.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170822373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.874 kcal (2) G-P(sol) polarization free energy of solvation -61.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds