Wall clock time and date at job start Mon Mar 30 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99701 * 2 1 4 4 H 1.48500 * 109.46657 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47226 * 300.00105 * 3 2 1 6 6 H 1.48503 * 109.46992 * 60.00448 * 3 2 1 7 7 C 1.38808 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00001 * 158.01718 * 7 2 1 9 9 N 1.36936 * 120.00246 * 338.02075 * 7 2 1 10 10 C 1.46496 * 119.99830 * 324.37231 * 9 7 2 11 11 C 1.50701 * 109.47269 * 264.04288 * 10 9 7 12 12 C 1.38235 * 120.00232 * 84.51319 * 11 10 9 13 13 C 1.38235 * 119.99812 * 179.97438 * 12 11 10 14 14 C 1.38238 * 120.00291 * 359.97438 * 13 12 11 15 15 C 1.38243 * 119.99660 * 0.27283 * 14 13 12 16 16 C 1.38236 * 119.99987 * 359.51309 * 15 14 13 17 17 C 1.46498 * 120.00278 * 144.37804 * 9 7 2 18 18 H 1.09001 * 108.94595 * 181.23042 * 17 9 7 19 19 C 1.46288 * 108.96009 * 299.99802 * 17 9 7 20 20 C 1.54201 * 112.07421 * 181.56013 * 19 17 9 21 21 C 1.50418 * 108.76955 * 282.18921 * 20 19 17 22 22 O 1.44181 * 112.77525 * 92.58000 * 21 20 19 23 23 C 1.44196 * 116.92637 * 318.47249 * 22 21 20 24 24 C 1.50413 * 112.78047 * 318.47986 * 23 22 21 25 25 H 0.97001 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47230 * 144.03717 * 10 9 7 27 27 H 1.09003 * 109.47048 * 24.03534 * 10 9 7 28 28 H 1.07993 * 119.99908 * 359.97438 * 12 11 10 29 29 H 1.07996 * 119.99737 * 179.97438 * 13 12 11 30 30 H 1.07998 * 120.00337 * 180.02562 * 14 13 12 31 31 H 1.07997 * 119.99456 * 179.72263 * 15 14 13 32 32 H 1.07999 * 119.99589 * 180.27239 * 16 15 14 33 33 H 1.08993 * 108.95820 * 302.22784 * 19 17 9 34 34 H 1.08997 * 108.96206 * 60.89136 * 19 17 9 35 35 H 1.09002 * 109.58824 * 41.96807 * 20 19 17 36 36 H 1.08995 * 109.59107 * 162.40204 * 20 19 17 37 37 H 1.09004 * 108.81953 * 213.42648 * 21 20 19 38 38 H 1.08997 * 108.81793 * 331.72635 * 21 20 19 39 39 H 1.09000 * 108.81963 * 79.32840 * 23 22 21 40 40 H 1.08993 * 108.82303 * 197.62742 * 23 22 21 41 41 H 1.09002 * 109.58694 * 332.78844 * 24 23 22 42 42 H 1.08993 * 109.58631 * 212.35870 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0314 -1.2360 -0.3507 9 7 1.4002 -2.3451 0.4428 10 6 0.4529 -2.2843 1.5585 11 6 1.1665 -2.6211 2.8424 12 6 1.8513 -1.6374 3.5311 13 6 2.5055 -1.9463 4.7091 14 6 2.4743 -3.2387 5.1987 15 6 1.7937 -4.2235 4.5072 16 6 1.1358 -3.9137 3.3316 17 6 1.6951 -3.6289 -0.1986 18 1 1.0997 -4.4076 0.2781 19 6 1.3288 -3.5489 -1.6126 20 6 1.5747 -4.8801 -2.3511 21 6 3.0454 -5.0092 -2.6392 22 8 3.7556 -5.7238 -1.6078 23 6 3.4002 -5.4244 -0.2428 24 6 3.1899 -3.9542 -0.0048 25 1 -0.4850 0.8401 0.0004 26 1 -0.3518 -3.0003 1.3914 27 1 0.0365 -1.2793 1.6273 28 1 1.8753 -0.6277 3.1489 29 1 3.0409 -1.1780 5.2469 30 1 2.9850 -3.4800 6.1192 31 1 1.7731 -5.2341 4.8874 32 1 0.6005 -4.6821 2.7938 33 1 0.2729 -3.2904 -1.6908 34 1 1.9197 -2.7659 -2.0878 35 1 1.2509 -5.7110 -1.7242 36 1 1.0170 -4.8870 -3.2874 37 1 3.1736 -5.5367 -3.5844 38 1 3.4739 -4.0116 -2.7347 39 1 2.4815 -5.9558 0.0061 40 1 4.1962 -5.7765 0.4132 41 1 3.7840 -3.3803 -0.7160 42 1 3.4899 -3.7021 1.0123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170831831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:36 Heat of formation + Delta-G solvation = -4.688935 kcal Electronic energy + Delta-G solvation = -22411.273089 eV Core-core repulsion = 19356.595993 eV Total energy + Delta-G solvation = -3054.677096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.15683 -38.41541 -35.94820 -33.28551 -31.85946 -31.43147 -30.24863 -29.56420 -26.36528 -25.61654 -24.77344 -22.42680 -21.88418 -20.33642 -19.97379 -19.69024 -16.72069 -16.35807 -16.08884 -15.67128 -14.78136 -14.54771 -14.35956 -14.27793 -13.86126 -13.45740 -13.14209 -12.81817 -12.79507 -12.49170 -12.20822 -11.94454 -11.92293 -11.27920 -11.11955 -10.93013 -10.86273 -10.81254 -10.45734 -10.41102 -10.23274 -10.00953 -9.87004 -9.76785 -9.55669 -9.09114 -8.54640 -8.31178 -8.00867 -6.67803 -5.88614 -3.39958 2.00794 2.04531 3.29499 3.39892 3.42517 4.15500 4.35328 4.48973 5.16422 5.23343 5.29478 5.39954 5.44110 5.47043 5.49503 5.60961 5.64887 5.72462 5.88462 5.97783 6.07898 6.15126 6.18081 6.22087 6.28793 6.33425 6.38197 6.49183 6.53243 6.69205 6.75191 6.78122 6.84443 7.05385 7.11085 7.14511 7.27398 7.41889 7.58627 7.64348 7.71288 7.77133 8.43915 9.10171 9.73364 10.31112 11.13352 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.009128 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.798158 B = 3066.815578 C = 4756.116473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.012 3.988 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.248 4.248 8 H 0.060 0.940 9 N -0.572 5.572 10 C 0.176 3.824 11 C -0.071 4.071 12 C -0.099 4.099 13 C -0.127 4.127 14 C -0.145 4.145 15 C -0.129 4.129 16 C -0.125 4.125 17 C 0.179 3.821 18 H 0.044 0.956 19 C -0.121 4.121 20 C -0.154 4.154 21 C 0.067 3.933 22 O -0.404 6.404 23 C 0.069 3.931 24 C -0.160 4.160 25 H 0.255 0.745 26 H 0.030 0.970 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -7.986 2.820 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.188 4.188 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.378 4.378 8 H 0.078 0.922 9 N -0.291 5.291 10 C 0.050 3.950 11 C -0.074 4.074 12 C -0.118 4.118 13 C -0.146 4.146 14 C -0.163 4.163 15 C -0.147 4.147 16 C -0.144 4.144 17 C 0.073 3.927 18 H 0.062 0.938 19 C -0.159 4.159 20 C -0.192 4.192 21 C -0.009 4.009 22 O -0.324 6.324 23 C -0.007 4.007 24 C -0.199 4.199 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.472 -7.950 2.729 8.761 hybrid contribution 0.315 1.153 0.171 1.207 sum 2.787 -6.797 2.901 7.898 Atomic orbital electron populations 1.70013 1.05459 1.25695 1.51475 1.25082 0.94928 0.98529 1.00257 0.86448 0.79980 0.84325 0.77447 1.20056 1.21671 1.21362 1.18965 0.94388 0.85596 1.38803 0.92187 1.43887 1.51097 1.02460 1.31623 1.20039 0.89735 1.03286 0.81913 1.21298 0.96803 0.92478 0.96853 1.21098 0.96768 0.99932 0.94005 1.21087 1.00212 0.96251 0.97002 1.20886 1.01655 0.93675 1.00103 1.20974 0.99077 0.98404 0.96221 1.21030 1.00612 0.96471 0.96281 1.19396 0.92287 0.88821 0.92227 0.93799 1.21025 1.02610 0.95103 0.97192 1.21952 0.96381 0.99704 1.01179 1.22261 0.91957 0.96863 0.89860 1.88153 1.63555 1.65962 1.14763 1.22261 0.99765 0.96514 0.82177 1.22368 1.00249 0.94517 1.02777 0.93535 0.95156 0.87695 0.86319 0.87251 0.87428 0.87373 0.87278 0.91897 0.91155 0.91615 0.91345 0.90642 0.93048 0.93837 0.90623 0.91410 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.84 11.46 55.49 0.64 -23.20 16 2 C 0.01 0.32 4.90 -17.43 -0.09 0.23 16 3 Si 0.89 20.67 29.61 -169.99 -5.03 15.64 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.22 8.11 -15.06 -0.12 -6.34 16 8 H 0.06 1.56 7.43 -52.48 -0.39 1.17 16 9 N -0.57 -12.97 2.30 -169.97 -0.39 -13.36 16 10 C 0.18 3.90 5.29 -5.20 -0.03 3.87 16 11 C -0.07 -1.41 5.45 -104.62 -0.57 -1.98 16 12 C -0.10 -1.94 9.72 -39.58 -0.38 -2.33 16 13 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 14 C -0.14 -2.24 10.05 -39.58 -0.40 -2.64 16 15 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 16 C -0.13 -2.18 9.68 -39.58 -0.38 -2.56 16 17 C 0.18 3.50 2.17 -70.49 -0.15 3.35 16 18 H 0.04 0.83 7.24 -51.93 -0.38 0.46 16 19 C -0.12 -2.27 4.53 -29.30 -0.13 -2.41 16 20 C -0.15 -2.34 5.61 -27.39 -0.15 -2.49 16 21 C 0.07 1.01 6.26 35.87 0.22 1.24 16 22 O -0.40 -6.76 10.88 -35.23 -0.38 -7.14 16 23 C 0.07 1.11 6.26 35.87 0.22 1.33 16 24 C -0.16 -2.92 4.56 -27.39 -0.12 -3.04 16 25 H 0.25 6.69 8.31 -40.82 -0.34 6.36 16 26 H 0.03 0.65 7.93 -51.93 -0.41 0.24 16 27 H 0.11 2.64 5.45 -51.93 -0.28 2.36 16 28 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.46 6.91 -51.93 -0.36 1.10 16 35 H 0.07 0.98 7.15 -51.93 -0.37 0.61 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.83 6.68 -51.93 -0.35 0.48 16 39 H 0.04 0.67 6.67 -51.93 -0.35 0.32 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.33 6.88 -51.93 -0.36 0.97 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -26.65 329.91 -9.69 -36.34 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.60 Total: 5.46 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.88 Total: -18.72 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.25 Total: -36.56 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.38 Total: -7.14 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.65 -9.69 -36.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170831831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.647 kcal (2) G-P(sol) polarization free energy of solvation -26.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds