Wall clock time and date at job start Mon Mar 30 2020 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99701 * 2 1 4 4 H 1.48500 * 109.46657 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47226 * 300.00105 * 3 2 1 6 6 H 1.48503 * 109.46992 * 60.00448 * 3 2 1 7 7 C 1.38808 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00001 * 158.01718 * 7 2 1 9 9 N 1.36936 * 120.00246 * 338.02075 * 7 2 1 10 10 C 1.46496 * 119.99830 * 324.37231 * 9 7 2 11 11 C 1.50701 * 109.47269 * 264.04288 * 10 9 7 12 12 C 1.38235 * 120.00232 * 84.51319 * 11 10 9 13 13 C 1.38235 * 119.99812 * 179.97438 * 12 11 10 14 14 C 1.38238 * 120.00291 * 359.97438 * 13 12 11 15 15 C 1.38243 * 119.99660 * 0.27283 * 14 13 12 16 16 C 1.38236 * 119.99987 * 359.51309 * 15 14 13 17 17 C 1.46498 * 120.00278 * 144.37804 * 9 7 2 18 18 H 1.09001 * 108.94595 * 181.23042 * 17 9 7 19 19 C 1.46288 * 108.96009 * 299.99802 * 17 9 7 20 20 C 1.54201 * 112.07421 * 181.56013 * 19 17 9 21 21 C 1.50418 * 108.76955 * 282.18921 * 20 19 17 22 22 O 1.44181 * 112.77525 * 92.58000 * 21 20 19 23 23 C 1.44196 * 116.92637 * 318.47249 * 22 21 20 24 24 C 1.50413 * 112.78047 * 318.47986 * 23 22 21 25 25 H 0.97001 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47230 * 144.03717 * 10 9 7 27 27 H 1.09003 * 109.47048 * 24.03534 * 10 9 7 28 28 H 1.07993 * 119.99908 * 359.97438 * 12 11 10 29 29 H 1.07996 * 119.99737 * 179.97438 * 13 12 11 30 30 H 1.07998 * 120.00337 * 180.02562 * 14 13 12 31 31 H 1.07997 * 119.99456 * 179.72263 * 15 14 13 32 32 H 1.07999 * 119.99589 * 180.27239 * 16 15 14 33 33 H 1.08993 * 108.95820 * 302.22784 * 19 17 9 34 34 H 1.08997 * 108.96206 * 60.89136 * 19 17 9 35 35 H 1.09002 * 109.58824 * 41.96807 * 20 19 17 36 36 H 1.08995 * 109.59107 * 162.40204 * 20 19 17 37 37 H 1.09004 * 108.81953 * 213.42648 * 21 20 19 38 38 H 1.08997 * 108.81793 * 331.72635 * 21 20 19 39 39 H 1.09000 * 108.81963 * 79.32840 * 23 22 21 40 40 H 1.08993 * 108.82303 * 197.62742 * 23 22 21 41 41 H 1.09002 * 109.58694 * 332.78844 * 24 23 22 42 42 H 1.08993 * 109.58631 * 212.35870 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0314 -1.2360 -0.3507 9 7 1.4002 -2.3451 0.4428 10 6 0.4529 -2.2843 1.5585 11 6 1.1665 -2.6211 2.8424 12 6 1.8513 -1.6374 3.5311 13 6 2.5055 -1.9463 4.7091 14 6 2.4743 -3.2387 5.1987 15 6 1.7937 -4.2235 4.5072 16 6 1.1358 -3.9137 3.3316 17 6 1.6951 -3.6289 -0.1986 18 1 1.0997 -4.4076 0.2781 19 6 1.3288 -3.5489 -1.6126 20 6 1.5747 -4.8801 -2.3511 21 6 3.0454 -5.0092 -2.6392 22 8 3.7556 -5.7238 -1.6078 23 6 3.4002 -5.4244 -0.2428 24 6 3.1899 -3.9542 -0.0048 25 1 -0.4850 0.8401 0.0004 26 1 -0.3518 -3.0003 1.3914 27 1 0.0365 -1.2793 1.6273 28 1 1.8753 -0.6277 3.1489 29 1 3.0409 -1.1780 5.2469 30 1 2.9850 -3.4800 6.1192 31 1 1.7731 -5.2341 4.8874 32 1 0.6005 -4.6821 2.7938 33 1 0.2729 -3.2904 -1.6908 34 1 1.9197 -2.7659 -2.0878 35 1 1.2509 -5.7110 -1.7242 36 1 1.0170 -4.8870 -3.2874 37 1 3.1736 -5.5367 -3.5844 38 1 3.4739 -4.0116 -2.7347 39 1 2.4815 -5.9558 0.0061 40 1 4.1962 -5.7765 0.4132 41 1 3.7840 -3.3803 -0.7160 42 1 3.4899 -3.7021 1.0123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170831831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:35 Heat of formation + Delta-G solvation = -17.250626 kcal Electronic energy + Delta-G solvation = -22411.817805 eV Core-core repulsion = 19356.595993 eV Total energy + Delta-G solvation = -3055.221812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61095 -39.77599 -37.51967 -34.87348 -33.47119 -32.92291 -31.60033 -31.16242 -27.83405 -27.38032 -26.23956 -24.03322 -23.24409 -21.81061 -21.34944 -21.28130 -18.47915 -17.77771 -17.43201 -17.13903 -16.50608 -16.01735 -15.87409 -15.76564 -15.34783 -15.14471 -14.61296 -14.20729 -14.12642 -13.93625 -13.73999 -13.43155 -13.28356 -13.05933 -12.85741 -12.61826 -12.47804 -12.28163 -12.15967 -11.88059 -11.65949 -11.61528 -11.48771 -11.39525 -11.11995 -10.50647 -10.37498 -9.65856 -9.42240 -8.56801 -7.84729 -5.38739 0.65541 0.67887 1.38906 1.44541 1.52143 2.48244 2.91518 3.02755 3.26547 3.62656 3.91254 4.06279 4.09902 4.14816 4.23992 4.26995 4.33527 4.39936 4.44333 4.64956 4.67047 4.71115 4.73008 4.83689 4.85751 4.95299 5.00427 5.02497 5.19550 5.27979 5.30047 5.32462 5.33604 5.55259 5.60603 5.65508 5.73051 5.74638 5.81086 6.06208 6.31453 6.35361 6.49759 7.16729 7.86818 8.39297 9.13711 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.009128 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.798158 B = 3066.815578 C = 4756.116473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.030 4.030 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.239 4.239 8 H 0.048 0.952 9 N -0.584 5.584 10 C 0.183 3.817 11 C -0.091 4.091 12 C -0.125 4.125 13 C -0.129 4.129 14 C -0.136 4.136 15 C -0.120 4.120 16 C -0.129 4.129 17 C 0.177 3.823 18 H 0.053 0.947 19 C -0.113 4.113 20 C -0.140 4.140 21 C 0.065 3.935 22 O -0.411 6.411 23 C 0.074 3.926 24 C -0.143 4.143 25 H 0.250 0.750 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.121 0.879 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -10.605 4.022 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.228 4.228 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.370 4.370 8 H 0.066 0.934 9 N -0.303 5.303 10 C 0.057 3.943 11 C -0.093 4.093 12 C -0.144 4.144 13 C -0.147 4.147 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.148 4.148 17 C 0.072 3.928 18 H 0.071 0.929 19 C -0.151 4.151 20 C -0.179 4.179 21 C -0.011 4.011 22 O -0.332 6.332 23 C -0.003 4.003 24 C -0.183 4.183 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.148 0.852 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.687 -10.587 3.938 11.882 hybrid contribution -0.048 1.905 -0.134 1.911 sum 3.639 -8.681 3.804 10.153 Atomic orbital electron populations 1.70116 1.06432 1.25674 1.53492 1.25565 0.95437 1.00665 1.01087 0.85669 0.79073 0.81651 0.76889 1.19763 1.22000 1.21639 1.18961 0.93761 0.86705 1.37565 0.93442 1.44049 1.50805 1.02929 1.32513 1.19788 0.89907 1.01193 0.83428 1.21006 0.97896 0.94042 0.96375 1.21003 0.98820 0.98730 0.95877 1.21323 0.99609 0.97931 0.95881 1.21334 1.00519 0.92579 1.00934 1.21385 0.97315 1.00236 0.94887 1.21161 1.00969 0.95363 0.97262 1.19555 0.93375 0.87565 0.92344 0.92884 1.20911 1.00288 0.96766 0.97182 1.21858 0.96965 0.97266 1.01778 1.22346 0.91383 0.96590 0.90737 1.88152 1.64040 1.65968 1.15015 1.22239 1.01137 0.94401 0.82480 1.22154 0.98516 0.96330 1.01292 0.94089 0.95396 0.91190 0.89279 0.85235 0.83675 0.83664 0.86113 0.94420 0.93841 0.90564 0.89217 0.87652 0.94596 0.92574 0.88833 0.93314 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.81 11.46 21.65 0.25 -51.56 16 2 C -0.03 -1.63 4.90 84.86 0.42 -1.22 16 3 Si 0.94 44.28 29.61 68.60 2.03 46.31 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 7 C -0.24 -12.56 8.11 84.03 0.68 -11.87 16 8 H 0.05 2.58 7.43 -2.91 -0.02 2.56 16 9 N -0.58 -27.47 2.30 -691.66 -1.59 -29.06 16 10 C 0.18 8.45 5.29 85.63 0.45 8.91 16 11 C -0.09 -3.63 5.45 -19.86 -0.11 -3.74 16 12 C -0.13 -5.01 9.72 22.27 0.22 -4.79 16 13 C -0.13 -4.15 10.05 22.27 0.22 -3.92 16 14 C -0.14 -3.66 10.05 22.27 0.22 -3.44 16 15 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 16 C -0.13 -4.25 9.68 22.27 0.22 -4.03 16 17 C 0.18 6.98 2.17 43.33 0.09 7.08 16 18 H 0.05 1.98 7.24 -2.39 -0.02 1.97 16 19 C -0.11 -4.31 4.53 28.93 0.13 -4.18 16 20 C -0.14 -4.02 5.61 30.17 0.17 -3.85 16 21 C 0.07 1.85 6.26 71.15 0.45 2.29 16 22 O -0.41 -12.70 10.88 -148.98 -1.62 -14.32 16 23 C 0.07 2.19 6.26 71.15 0.45 2.63 16 24 C -0.14 -5.18 4.56 30.17 0.14 -5.05 16 25 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 26 H 0.03 1.25 7.93 -2.39 -0.02 1.23 16 27 H 0.07 3.76 5.45 -2.39 -0.01 3.75 16 28 H 0.09 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 31 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.04 1.87 6.91 -2.39 -0.02 1.86 16 35 H 0.08 2.06 7.15 -2.39 -0.02 2.05 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.04 1.13 6.68 -2.39 -0.02 1.12 16 39 H 0.06 1.55 6.67 -2.39 -0.02 1.53 16 40 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.05 1.93 6.88 -2.39 -0.02 1.91 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -60.12 329.91 4.02 -56.10 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.98 Total: 20.76 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 3.97 Total: -28.24 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -1.34 Total: -80.62 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.62 Total: -14.32 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -60.12 4.02 -56.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170831831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.851 kcal (2) G-P(sol) polarization free energy of solvation -60.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds