Wall clock time and date at job start Mon Mar 30 2020 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47062 * 89.99995 * 3 2 1 5 5 H 1.48507 * 109.46954 * 330.00285 * 3 2 1 6 6 H 1.48496 * 109.47396 * 210.00348 * 3 2 1 7 7 C 1.38811 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00124 * 202.91193 * 7 2 1 9 9 N 1.36940 * 120.00387 * 22.92244 * 7 2 1 10 10 C 1.46503 * 119.99632 * 34.01179 * 9 7 2 11 11 C 1.50705 * 109.46904 * 90.00652 * 10 9 7 12 12 C 1.38231 * 119.99838 * 269.72415 * 11 10 9 13 13 C 1.38242 * 119.99756 * 179.76513 * 12 11 10 14 14 C 1.38238 * 119.99697 * 0.50977 * 13 12 11 15 15 C 1.38232 * 120.00399 * 359.74102 * 14 13 12 16 16 C 1.38238 * 119.99754 * 89.99906 * 11 10 9 17 17 C 1.46498 * 120.00109 * 214.02094 * 9 7 2 18 18 H 1.09002 * 109.53839 * 180.28969 * 17 9 7 19 19 C 1.54205 * 109.54062 * 60.12450 * 17 9 7 20 20 C 1.46278 * 111.98601 * 162.60453 * 19 17 9 21 21 C 1.54119 * 112.20455 * 61.41854 * 20 19 17 22 22 O 1.40326 * 108.70270 * 280.43688 * 21 20 19 23 23 C 1.43987 * 116.57583 * 95.03861 * 22 21 20 24 24 C 1.50622 * 109.53696 * 300.53686 * 17 9 7 25 25 H 0.96997 * 120.00127 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46781 * 210.00229 * 10 9 7 27 27 H 1.08997 * 109.47356 * 330.00894 * 10 9 7 28 28 H 1.07999 * 120.00573 * 359.97438 * 12 11 10 29 29 H 1.07999 * 119.99797 * 180.23074 * 13 12 11 30 30 H 1.07996 * 119.99663 * 179.72774 * 14 13 12 31 31 H 1.08000 * 120.00275 * 179.97438 * 15 14 13 32 32 H 1.08003 * 120.00377 * 359.97438 * 16 11 10 33 33 H 1.09001 * 108.97483 * 283.25483 * 19 17 9 34 34 H 1.09000 * 108.97565 * 41.95607 * 19 17 9 35 35 H 1.09006 * 108.93215 * 182.11253 * 20 19 17 36 36 H 1.08999 * 108.94085 * 300.71016 * 20 19 17 37 37 H 1.08993 * 109.59486 * 40.19840 * 21 20 19 38 38 H 1.08995 * 109.60031 * 160.51534 * 21 20 19 39 39 H 1.08999 * 108.69791 * 78.91713 * 23 22 21 40 40 H 1.09006 * 108.69007 * 196.87886 * 23 22 21 41 41 H 1.09003 * 108.88572 * 330.97423 * 24 17 9 42 42 H 1.09005 * 108.88308 * 89.42921 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4476 2.6526 -0.7000 6 1 3.5477 1.4401 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0262 -1.2390 0.3647 9 7 1.4066 -2.3415 -0.4608 10 6 0.4483 -2.2665 -1.5664 11 6 1.1781 -2.4250 -2.8754 12 6 1.6652 -1.3118 -3.5344 13 6 2.3389 -1.4577 -4.7327 14 6 2.5163 -2.7159 -5.2771 15 6 2.0247 -3.8287 -4.6207 16 6 1.3555 -3.6833 -3.4198 17 6 1.7190 -3.6353 0.1513 18 1 1.1513 -4.4210 -0.3473 19 6 1.3478 -3.6011 1.6476 20 6 1.2467 -4.9444 2.2176 21 6 2.5804 -5.7126 2.1384 22 8 2.7320 -6.2182 0.8382 23 6 3.5012 -5.4176 -0.0786 24 6 3.1931 -3.9136 0.0163 25 1 -0.4850 0.8400 0.0004 26 1 -0.2890 -3.0625 -1.4628 27 1 -0.0551 -1.2999 -1.5460 28 1 1.5224 -0.3284 -3.1115 29 1 2.7227 -0.5883 -5.2457 30 1 3.0388 -2.8295 -6.2154 31 1 2.1630 -4.8117 -5.0462 32 1 0.9715 -4.5527 -2.9069 33 1 2.1110 -3.0425 2.1894 34 1 0.3901 -3.0937 1.7636 35 1 0.9466 -4.8636 3.2624 36 1 0.4841 -5.5027 1.6745 37 1 3.4052 -5.0376 2.3667 38 1 2.5720 -6.5346 2.8541 39 1 4.5605 -5.5709 0.1274 40 1 3.2935 -5.7533 -1.0947 41 1 3.5646 -3.4201 -0.8819 42 1 3.7107 -3.5014 0.8825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170831833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:39 Heat of formation + Delta-G solvation = -5.825617 kcal Electronic energy + Delta-G solvation = -22436.182735 eV Core-core repulsion = 19381.456348 eV Total energy + Delta-G solvation = -3054.726386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.10993 -38.41312 -35.94915 -33.40273 -31.97429 -31.40054 -30.20060 -29.46773 -26.00761 -25.59296 -24.97049 -22.37588 -21.83393 -20.30826 -20.25387 -19.50158 -16.68301 -16.22411 -16.01763 -15.69110 -14.95800 -14.56560 -14.42831 -14.22199 -13.86680 -13.41961 -13.07944 -12.98433 -12.75823 -12.45932 -12.36487 -11.91281 -11.64347 -11.20039 -11.10364 -11.01910 -10.77728 -10.65706 -10.46700 -10.38756 -10.02749 -9.97898 -9.88453 -9.81818 -9.56267 -9.03458 -8.52002 -8.26726 -7.96845 -6.65508 -5.83237 -3.35302 2.05254 2.08865 3.31371 3.40420 3.44016 4.17185 4.39947 4.52423 5.19119 5.26733 5.36209 5.47125 5.47629 5.49646 5.52315 5.58040 5.65084 5.77453 5.86097 5.93862 6.02088 6.12484 6.19228 6.23216 6.28058 6.45002 6.51189 6.54919 6.69516 6.73671 6.80422 6.80947 6.86012 7.09551 7.15800 7.18876 7.28141 7.44889 7.67123 7.73089 7.76557 7.80225 8.46820 9.13712 9.78285 10.34320 11.16923 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.008985 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.726792 B = 3115.399872 C = 4754.641422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.011 3.989 3 Si 0.887 3.113 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.060 0.940 9 N -0.570 5.570 10 C 0.169 3.831 11 C -0.068 4.068 12 C -0.099 4.099 13 C -0.128 4.128 14 C -0.145 4.145 15 C -0.130 4.130 16 C -0.123 4.123 17 C 0.185 3.815 18 H 0.053 0.947 19 C -0.125 4.125 20 C -0.142 4.142 21 C 0.069 3.931 22 O -0.390 6.390 23 C 0.068 3.932 24 C -0.159 4.159 25 H 0.255 0.745 26 H 0.032 0.968 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -7.911 -2.750 9.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.189 4.189 3 Si 0.716 3.284 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.077 0.923 9 N -0.288 5.288 10 C 0.043 3.957 11 C -0.071 4.071 12 C -0.118 4.118 13 C -0.146 4.146 14 C -0.163 4.163 15 C -0.148 4.148 16 C -0.142 4.142 17 C 0.078 3.922 18 H 0.072 0.928 19 C -0.164 4.164 20 C -0.181 4.181 21 C -0.008 4.008 22 O -0.309 6.309 23 C -0.009 4.009 24 C -0.198 4.198 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.418 -7.915 -2.760 9.053 hybrid contribution 0.771 1.295 0.068 1.509 sum 4.190 -6.620 -2.693 8.284 Atomic orbital electron populations 1.69961 1.05422 1.25672 1.51663 1.25002 0.94876 0.98379 1.00660 0.86548 0.79752 0.84179 0.77905 1.21362 1.21435 1.20356 1.18909 0.94776 0.85868 1.37880 0.92272 1.43877 1.50324 1.01992 1.32622 1.20148 0.90167 1.03712 0.81672 1.21247 0.96934 0.92024 0.96866 1.21107 0.97400 0.99250 0.94067 1.21081 1.00069 0.96763 0.96719 1.20872 1.02385 0.93064 1.00013 1.20973 0.99797 0.97771 0.96234 1.21039 1.00208 0.97186 0.95743 1.20012 0.92140 0.88341 0.91735 0.92833 1.20956 1.02864 0.94786 0.97777 1.21123 0.98212 0.98045 1.00687 1.22312 0.96885 0.97325 0.84323 1.87379 1.74479 1.47498 1.21584 1.22932 0.93468 0.91668 0.92799 1.22447 1.00488 0.93951 1.02927 0.93527 0.94959 0.87330 0.86429 0.87311 0.87477 0.87395 0.87216 0.92868 0.91384 0.92380 0.91906 0.93292 0.90850 0.94272 0.90161 0.90399 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.00 11.31 55.49 0.63 -23.38 16 2 C 0.01 0.27 4.95 -17.43 -0.09 0.19 16 3 Si 0.89 20.81 29.61 -169.99 -5.03 15.78 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.24 -6.21 8.56 -15.06 -0.13 -6.33 16 8 H 0.06 1.54 7.57 -52.49 -0.40 1.14 16 9 N -0.57 -13.13 2.27 -167.66 -0.38 -13.51 16 10 C 0.17 3.80 5.39 -5.19 -0.03 3.78 16 11 C -0.07 -1.37 5.46 -104.62 -0.57 -1.95 16 12 C -0.10 -1.99 9.70 -39.58 -0.38 -2.38 16 13 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 14 C -0.14 -2.30 10.05 -39.58 -0.40 -2.70 16 15 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 16 C -0.12 -2.21 9.70 -39.58 -0.38 -2.59 16 17 C 0.18 3.69 2.33 -68.49 -0.16 3.53 16 18 H 0.05 1.08 7.49 -51.93 -0.39 0.69 16 19 C -0.12 -2.41 4.39 -29.30 -0.13 -2.53 16 20 C -0.14 -2.25 5.47 -29.34 -0.16 -2.41 16 21 C 0.07 1.00 6.38 37.74 0.24 1.25 16 22 O -0.39 -6.32 10.17 -33.69 -0.34 -6.66 16 23 C 0.07 1.05 6.67 37.58 0.25 1.31 16 24 C -0.16 -2.87 4.18 -27.50 -0.12 -2.99 16 25 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.03 0.70 7.87 -51.93 -0.41 0.29 16 27 H 0.11 2.76 5.26 -51.93 -0.27 2.49 16 28 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.05 1.07 7.59 -51.93 -0.39 0.68 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.02 8.13 -51.93 -0.42 0.59 16 37 H 0.05 0.71 6.98 -51.93 -0.36 0.35 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.54 7.97 -51.93 -0.41 1.13 16 42 H 0.05 1.02 6.84 -51.93 -0.35 0.66 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -26.82 333.01 -9.74 -36.56 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.78 Total: 5.12 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.85 Total: -18.92 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.25 Total: -36.88 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.34 Total: -6.66 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.82 -9.74 -36.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170831833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.730 kcal (2) G-P(sol) polarization free energy of solvation -26.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds