Wall clock time and date at job start Mon Mar 30 2020 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47062 * 89.99995 * 3 2 1 5 5 H 1.48507 * 109.46954 * 330.00285 * 3 2 1 6 6 H 1.48496 * 109.47396 * 210.00348 * 3 2 1 7 7 C 1.38811 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00124 * 202.91193 * 7 2 1 9 9 N 1.36940 * 120.00387 * 22.92244 * 7 2 1 10 10 C 1.46503 * 119.99632 * 34.01179 * 9 7 2 11 11 C 1.50705 * 109.46904 * 90.00652 * 10 9 7 12 12 C 1.38231 * 119.99838 * 269.72415 * 11 10 9 13 13 C 1.38242 * 119.99756 * 179.76513 * 12 11 10 14 14 C 1.38238 * 119.99697 * 0.50977 * 13 12 11 15 15 C 1.38232 * 120.00399 * 359.74102 * 14 13 12 16 16 C 1.38238 * 119.99754 * 89.99906 * 11 10 9 17 17 C 1.46498 * 120.00109 * 214.02094 * 9 7 2 18 18 H 1.09002 * 109.53839 * 180.28969 * 17 9 7 19 19 C 1.54205 * 109.54062 * 60.12450 * 17 9 7 20 20 C 1.46278 * 111.98601 * 162.60453 * 19 17 9 21 21 C 1.54119 * 112.20455 * 61.41854 * 20 19 17 22 22 O 1.40326 * 108.70270 * 280.43688 * 21 20 19 23 23 C 1.43987 * 116.57583 * 95.03861 * 22 21 20 24 24 C 1.50622 * 109.53696 * 300.53686 * 17 9 7 25 25 H 0.96997 * 120.00127 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46781 * 210.00229 * 10 9 7 27 27 H 1.08997 * 109.47356 * 330.00894 * 10 9 7 28 28 H 1.07999 * 120.00573 * 359.97438 * 12 11 10 29 29 H 1.07999 * 119.99797 * 180.23074 * 13 12 11 30 30 H 1.07996 * 119.99663 * 179.72774 * 14 13 12 31 31 H 1.08000 * 120.00275 * 179.97438 * 15 14 13 32 32 H 1.08003 * 120.00377 * 359.97438 * 16 11 10 33 33 H 1.09001 * 108.97483 * 283.25483 * 19 17 9 34 34 H 1.09000 * 108.97565 * 41.95607 * 19 17 9 35 35 H 1.09006 * 108.93215 * 182.11253 * 20 19 17 36 36 H 1.08999 * 108.94085 * 300.71016 * 20 19 17 37 37 H 1.08993 * 109.59486 * 40.19840 * 21 20 19 38 38 H 1.08995 * 109.60031 * 160.51534 * 21 20 19 39 39 H 1.08999 * 108.69791 * 78.91713 * 23 22 21 40 40 H 1.09006 * 108.69007 * 196.87886 * 23 22 21 41 41 H 1.09003 * 108.88572 * 330.97423 * 24 17 9 42 42 H 1.09005 * 108.88308 * 89.42921 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4476 2.6526 -0.7000 6 1 3.5477 1.4401 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0262 -1.2390 0.3647 9 7 1.4066 -2.3415 -0.4608 10 6 0.4483 -2.2665 -1.5664 11 6 1.1781 -2.4250 -2.8754 12 6 1.6652 -1.3118 -3.5344 13 6 2.3389 -1.4577 -4.7327 14 6 2.5163 -2.7159 -5.2771 15 6 2.0247 -3.8287 -4.6207 16 6 1.3555 -3.6833 -3.4198 17 6 1.7190 -3.6353 0.1513 18 1 1.1513 -4.4210 -0.3473 19 6 1.3478 -3.6011 1.6476 20 6 1.2467 -4.9444 2.2176 21 6 2.5804 -5.7126 2.1384 22 8 2.7320 -6.2182 0.8382 23 6 3.5012 -5.4176 -0.0786 24 6 3.1931 -3.9136 0.0163 25 1 -0.4850 0.8400 0.0004 26 1 -0.2890 -3.0625 -1.4628 27 1 -0.0551 -1.2999 -1.5460 28 1 1.5224 -0.3284 -3.1115 29 1 2.7227 -0.5883 -5.2457 30 1 3.0388 -2.8295 -6.2154 31 1 2.1630 -4.8117 -5.0462 32 1 0.9715 -4.5527 -2.9069 33 1 2.1110 -3.0425 2.1894 34 1 0.3901 -3.0937 1.7636 35 1 0.9466 -4.8636 3.2624 36 1 0.4841 -5.5027 1.6745 37 1 3.4052 -5.0376 2.3667 38 1 2.5720 -6.5346 2.8541 39 1 4.5605 -5.5709 0.1274 40 1 3.2935 -5.7533 -1.0947 41 1 3.5646 -3.4201 -0.8819 42 1 3.7107 -3.5014 0.8825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170831833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:39 Heat of formation + Delta-G solvation = -18.233623 kcal Electronic energy + Delta-G solvation = -22436.720786 eV Core-core repulsion = 19381.456348 eV Total energy + Delta-G solvation = -3055.264438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53579 -39.79729 -37.54720 -34.97021 -33.57760 -32.97486 -31.59027 -31.08109 -27.45527 -27.34998 -26.45303 -23.98876 -23.23557 -21.78381 -21.63414 -21.16388 -18.39443 -17.58164 -17.50813 -17.15100 -16.53766 -16.06930 -15.86638 -15.75949 -15.49931 -15.01984 -14.62530 -14.49702 -14.13042 -13.93263 -13.75406 -13.43780 -13.19263 -12.90596 -12.82101 -12.61324 -12.43600 -12.23297 -12.16043 -11.83160 -11.67004 -11.54765 -11.47583 -11.35223 -11.14060 -10.50404 -10.30168 -9.65408 -9.41634 -8.56906 -7.80643 -5.35932 0.66028 0.68571 1.40030 1.44834 1.52264 2.49757 2.95952 3.05105 3.28180 3.69879 3.94440 4.03700 4.15250 4.17819 4.24608 4.29918 4.35972 4.43755 4.45858 4.58248 4.66596 4.68517 4.71363 4.83001 4.85491 4.95528 5.00561 5.17131 5.21684 5.30483 5.33180 5.34160 5.36896 5.60329 5.60785 5.65348 5.73209 5.74584 5.82371 6.08423 6.31908 6.49410 6.52451 7.17956 7.89442 8.40908 9.15881 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.008985 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.726792 B = 3115.399872 C = 4754.641422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.032 4.032 3 Si 0.937 3.063 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.051 0.949 9 N -0.581 5.581 10 C 0.174 3.826 11 C -0.087 4.087 12 C -0.125 4.125 13 C -0.130 4.130 14 C -0.135 4.135 15 C -0.121 4.121 16 C -0.128 4.128 17 C 0.183 3.817 18 H 0.052 0.948 19 C -0.113 4.113 20 C -0.139 4.139 21 C 0.070 3.930 22 O -0.398 6.398 23 C 0.074 3.926 24 C -0.146 4.146 25 H 0.249 0.751 26 H 0.028 0.972 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -10.130 -4.003 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.229 4.229 3 Si 0.766 3.234 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.069 0.931 9 N -0.300 5.300 10 C 0.048 3.952 11 C -0.090 4.090 12 C -0.144 4.144 13 C -0.148 4.148 14 C -0.153 4.153 15 C -0.139 4.139 16 C -0.146 4.146 17 C 0.077 3.923 18 H 0.070 0.930 19 C -0.152 4.152 20 C -0.177 4.177 21 C -0.007 4.007 22 O -0.317 6.317 23 C -0.002 4.002 24 C -0.185 4.185 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.148 0.852 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.135 0.865 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.317 -10.152 -4.019 12.145 hybrid contribution 0.174 1.930 0.398 1.979 sum 5.491 -8.222 -3.621 10.529 Atomic orbital electron populations 1.70082 1.06487 1.25637 1.53591 1.25508 0.95367 1.00591 1.01429 0.85746 0.78672 0.81399 0.77534 1.21378 1.21850 1.20107 1.18963 0.94300 0.86867 1.36773 0.93109 1.44033 1.50065 1.02498 1.33403 1.19904 0.90306 1.01634 0.83316 1.20963 0.98178 0.93523 0.96325 1.21016 0.99577 0.97950 0.95902 1.21328 0.99196 0.98712 0.95545 1.21323 1.01076 0.91975 1.00936 1.21376 0.97889 0.99695 0.94913 1.21133 1.00597 0.96130 0.96776 1.20137 0.93562 0.86849 0.91768 0.92975 1.20839 1.00191 0.96635 0.97541 1.21072 0.99459 0.95785 1.01412 1.22411 0.95635 0.98288 0.84338 1.87378 1.74700 1.47467 1.22195 1.22899 0.94662 0.89219 0.93446 1.22252 0.98400 0.96255 1.01630 0.94131 0.95364 0.90644 0.89310 0.85190 0.83598 0.83705 0.86471 0.94171 0.95116 0.90536 0.92176 0.93129 0.87701 0.92007 0.89225 0.92199 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.28 11.31 21.65 0.24 -52.03 16 2 C -0.03 -1.74 4.95 84.86 0.42 -1.32 16 3 Si 0.94 44.35 29.61 68.60 2.03 46.38 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.24 -12.58 8.56 84.03 0.72 -11.86 16 8 H 0.05 2.73 7.57 -2.91 -0.02 2.71 16 9 N -0.58 -27.85 2.27 -684.36 -1.56 -29.41 16 10 C 0.17 8.26 5.39 85.63 0.46 8.72 16 11 C -0.09 -3.61 5.46 -19.86 -0.11 -3.72 16 12 C -0.13 -5.14 9.70 22.27 0.22 -4.92 16 13 C -0.13 -4.27 10.05 22.27 0.22 -4.04 16 14 C -0.14 -3.75 10.05 22.27 0.22 -3.53 16 15 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 16 C -0.13 -4.40 9.70 22.27 0.22 -4.19 16 17 C 0.18 7.43 2.33 44.63 0.10 7.54 16 18 H 0.05 2.11 7.49 -2.39 -0.02 2.09 16 19 C -0.11 -4.45 4.39 28.93 0.13 -4.32 16 20 C -0.14 -4.25 5.47 28.90 0.16 -4.09 16 21 C 0.07 1.86 6.38 72.36 0.46 2.32 16 22 O -0.40 -11.76 10.17 -143.48 -1.46 -13.22 16 23 C 0.07 2.12 6.67 72.26 0.48 2.60 16 24 C -0.15 -5.20 4.18 30.10 0.13 -5.07 16 25 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 26 H 0.03 1.30 7.87 -2.39 -0.02 1.28 16 27 H 0.08 4.12 5.26 -2.39 -0.01 4.11 16 28 H 0.09 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 31 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 33 H 0.04 1.65 7.59 -2.39 -0.02 1.63 16 34 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 37 H 0.05 1.34 6.98 -2.39 -0.02 1.32 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 2.40 8.14 -2.38 -0.02 2.39 16 41 H 0.06 2.36 7.97 -2.39 -0.02 2.34 16 42 H 0.05 1.76 6.84 -2.38 -0.02 1.75 16 Total: -1.00 -60.49 333.01 4.29 -56.20 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.97 Total: 21.17 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.05 Total: -29.09 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -1.31 Total: -81.44 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.46 Total: -13.22 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.49 4.29 -56.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170831833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.963 kcal (2) G-P(sol) polarization free energy of solvation -60.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds