Wall clock time and date at job start Mon Mar 30 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20757 * 119.99770 * 2 1 4 4 C 1.50699 * 119.99969 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.46683 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46993 * 299.99236 * 5 4 2 7 7 C 1.52994 * 109.47347 * 59.99781 * 5 4 2 8 8 N 1.46507 * 109.46725 * 179.97438 * 5 4 2 9 9 C 1.38863 * 119.99544 * 178.07534 * 8 5 4 10 10 C 1.39577 * 119.84438 * 2.13648 * 9 8 5 11 11 C 1.36325 * 120.16199 * 179.97438 * 10 9 8 12 12 C 1.40901 * 119.83323 * 0.02562 * 11 10 9 13 13 C 1.41142 * 120.15441 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99708 * 142.88929 * 13 12 11 15 15 C 1.39864 * 119.99971 * 322.89673 * 13 12 11 16 16 N 1.30900 * 120.00095 * 339.39156 * 15 13 12 17 17 Si 1.86803 * 119.99790 * 159.39661 * 15 13 12 18 18 H 1.48495 * 109.47134 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.46984 * 119.99872 * 17 15 13 20 20 H 1.48493 * 109.47223 * 239.99611 * 17 15 13 21 21 C 1.40858 * 119.69208 * 359.97438 * 12 11 10 22 22 C 1.36361 * 119.83438 * 359.71766 * 21 12 11 23 23 C 1.50703 * 119.92035 * 180.29685 * 22 21 12 24 24 H 1.08999 * 109.46897 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46663 * 299.98995 * 1 2 3 26 26 H 1.08991 * 109.47511 * 59.99599 * 1 2 3 27 27 H 1.08996 * 109.47123 * 59.99884 * 4 2 1 28 28 H 1.09001 * 109.46930 * 299.99306 * 4 2 1 29 29 H 1.09002 * 109.46718 * 192.08074 * 6 5 4 30 30 H 1.08994 * 109.47453 * 312.08526 * 6 5 4 31 31 H 1.09007 * 109.46708 * 72.08728 * 6 5 4 32 32 H 1.08997 * 109.47249 * 291.10317 * 7 5 4 33 33 H 1.08998 * 109.47451 * 51.10809 * 7 5 4 34 34 H 1.09008 * 109.47099 * 171.10413 * 7 5 4 35 35 H 0.96997 * 120.00008 * 358.07625 * 8 5 4 36 36 H 1.08007 * 119.92415 * 359.97379 * 10 9 8 37 37 H 1.08000 * 120.08412 * 180.02562 * 11 10 9 38 38 H 0.97004 * 120.00191 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.08739 * 180.02562 * 21 12 11 40 40 H 1.09003 * 109.47314 * 270.24131 * 23 22 21 41 41 H 1.09000 * 109.46967 * 30.24089 * 23 22 21 42 42 H 1.09001 * 109.47349 * 150.24290 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 6 3.7648 -1.0254 -0.0011 6 6 4.1339 -0.2229 -1.2505 7 6 4.1349 -0.2234 1.2481 8 7 4.4973 -2.2942 -0.0011 9 6 5.8854 -2.2944 -0.0419 10 6 6.5806 -1.0841 -0.0378 11 6 7.9432 -1.0768 -0.0771 12 6 8.6497 -2.2951 -0.1226 13 6 10.0605 -2.2954 -0.1641 14 1 10.6162 -3.0527 0.3689 15 6 10.7389 -1.3149 -0.8953 16 7 10.1192 -0.6605 -1.8447 17 14 12.5293 -0.9393 -0.5172 18 1 12.9941 -1.8101 0.5921 19 1 13.3542 -1.1934 -1.7256 20 1 12.6626 0.4845 -0.1174 21 6 7.9415 -3.5126 -0.1265 22 6 6.5786 -3.5048 -0.0805 23 6 5.8192 -4.8065 -0.0777 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.9972 -1.8763 -0.8908 28 1 1.9973 -1.8770 0.8892 29 1 5.2178 -0.2070 -1.3649 30 1 3.6827 -0.6875 -2.1271 31 1 3.7642 0.7975 -1.1491 32 1 3.7166 0.7803 1.1726 33 1 3.7319 -0.7194 2.1310 34 1 5.2199 -0.1595 1.3307 35 1 4.0128 -3.1340 0.0275 36 1 6.0377 -0.1510 -0.0033 37 1 8.4799 -0.1396 -0.0735 38 1 10.5895 0.0198 -2.3516 39 1 8.4765 -4.4502 -0.1608 40 1 5.6052 -5.1045 -1.1042 41 1 6.4198 -5.5766 0.4064 42 1 4.8832 -4.6800 0.4664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171498533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:09 Heat of formation + Delta-G solvation = -8.269533 kcal Electronic energy + Delta-G solvation = -21586.883060 eV Core-core repulsion = 18532.050698 eV Total energy + Delta-G solvation = -3054.832362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19369 -38.49562 -36.15713 -33.67173 -31.65995 -31.50011 -30.40264 -28.59956 -27.23342 -26.82389 -25.80752 -24.28776 -21.04857 -20.43735 -19.59847 -18.94785 -16.75853 -16.28783 -16.19812 -15.49716 -14.92975 -14.74927 -14.40912 -14.08734 -13.92185 -13.12701 -13.05079 -13.02353 -12.60655 -12.49042 -12.17404 -12.03518 -11.81857 -11.67123 -11.50832 -11.43931 -11.26482 -11.06031 -10.89544 -10.82386 -10.65353 -10.29485 -10.25388 -9.61054 -9.53014 -9.06699 -8.98369 -8.49073 -7.29725 -6.56223 -6.19075 -3.99849 1.87004 2.98011 3.04370 3.21872 3.27519 3.35676 3.76833 4.15281 4.51893 4.73192 4.81054 4.90479 4.97903 5.20870 5.27180 5.43615 5.63883 5.70309 5.72881 5.81316 5.91744 6.07092 6.18690 6.21757 6.30546 6.35829 6.36935 6.38698 6.55374 6.72689 6.80635 6.92866 6.99478 7.28228 7.44443 7.48821 7.58706 7.71083 7.85231 8.22047 8.32382 8.52499 8.72876 8.84650 9.13419 9.21008 10.50725 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027211 B = 0.004382 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.740175 B = 6388.235497 C = 7106.757554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.356 3.644 3 O -0.444 6.444 4 C -0.174 4.174 5 C 0.201 3.799 6 C -0.184 4.184 7 C -0.184 4.184 8 N -0.753 5.753 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.120 4.120 12 C 0.084 3.916 13 C -0.485 4.485 14 H 0.072 0.928 15 C 0.081 3.919 16 N -0.812 5.812 17 Si 0.894 3.106 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.275 1.275 21 C -0.172 4.172 22 C -0.139 4.139 23 C -0.093 4.093 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.382 0.618 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.274 0.726 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.490 -0.815 2.708 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.231 3.769 3 O -0.317 6.317 4 C -0.211 4.211 5 C 0.113 3.887 6 C -0.242 4.242 7 C -0.242 4.242 8 N -0.389 5.389 9 C 0.017 3.983 10 C -0.197 4.197 11 C -0.140 4.140 12 C 0.082 3.918 13 C -0.517 4.517 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.440 5.440 17 Si 0.719 3.281 18 H -0.187 1.187 19 H -0.205 1.205 20 H -0.201 1.201 21 C -0.192 4.192 22 C -0.143 4.143 23 C -0.150 4.150 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.216 0.784 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.141 0.092 2.526 16.337 hybrid contribution 0.624 -0.233 -0.020 0.666 sum -15.517 -0.142 2.506 15.719 Atomic orbital electron populations 1.22256 0.94659 1.04430 1.04620 1.24394 0.91564 0.90280 0.70621 1.90358 1.71205 1.35296 1.34888 1.22406 0.96437 0.97837 1.04464 1.19649 0.88000 0.85600 0.95450 1.22700 1.04813 1.00368 0.96324 1.22717 1.04449 1.00504 0.96487 1.44122 1.03170 1.04948 1.86675 1.17054 0.81900 0.93137 1.06222 1.20543 0.94802 0.95259 1.09101 1.20749 0.92203 0.98047 1.03010 1.17415 0.93361 0.90292 0.90759 1.19233 0.91437 1.11947 1.29045 0.91012 1.25673 0.99598 0.94795 0.93261 1.69873 1.38528 1.20361 1.15231 0.86511 0.83465 0.78936 0.79161 1.18734 1.20458 1.20088 1.20563 0.91889 0.97401 1.09363 1.18691 0.94001 0.91882 1.09759 1.20472 0.98574 0.95834 1.00115 0.90195 0.89181 0.89166 0.88291 0.88369 0.89624 0.93821 0.90962 0.90891 0.93807 0.90034 0.78361 0.87065 0.88251 0.91575 0.89002 0.93255 0.92949 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.32 10.33 36.01 0.37 -0.95 16 2 C 0.36 3.73 6.71 -29.03 -0.19 3.53 16 3 O -0.44 -6.24 12.25 6.00 0.07 -6.17 16 4 C -0.17 -1.83 4.69 -27.88 -0.13 -1.96 16 5 C 0.20 3.01 0.80 -131.82 -0.11 2.90 16 6 C -0.18 -3.06 7.73 37.16 0.29 -2.77 16 7 C -0.18 -2.92 7.82 37.15 0.29 -2.63 16 8 N -0.75 -12.66 5.14 -45.86 -0.24 -12.89 16 9 C 0.11 2.43 6.22 -83.69 -0.52 1.91 16 10 C -0.18 -4.06 6.36 -39.77 -0.25 -4.31 16 11 C -0.12 -3.15 8.65 -39.26 -0.34 -3.49 16 12 C 0.08 2.30 5.39 -106.80 -0.58 1.72 16 13 C -0.48 -13.44 8.95 -37.87 -0.34 -13.78 16 14 H 0.07 1.94 7.92 -52.49 -0.42 1.53 16 15 C 0.08 2.17 4.99 -17.34 -0.09 2.08 16 16 N -0.81 -22.37 12.05 55.54 0.67 -21.70 16 17 Si 0.89 19.83 29.61 -169.99 -5.03 14.79 16 18 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 C -0.17 -4.27 9.37 -39.27 -0.37 -4.64 16 22 C -0.14 -3.05 5.86 -104.81 -0.61 -3.66 16 23 C -0.09 -1.59 9.57 36.01 0.34 -1.25 16 24 H 0.08 0.36 8.00 -51.93 -0.42 -0.05 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.68 4.68 -51.93 -0.24 1.44 16 30 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.07 1.18 5.81 -51.92 -0.30 0.88 16 32 H 0.07 1.15 5.70 -51.93 -0.30 0.85 16 33 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.08 1.50 4.77 -51.92 -0.25 1.25 16 35 H 0.38 5.63 6.41 -40.82 -0.26 5.36 16 36 H 0.11 2.39 3.68 -52.48 -0.19 2.20 16 37 H 0.10 2.70 7.21 -52.49 -0.38 2.33 16 38 H 0.27 6.93 8.30 -40.82 -0.34 6.60 16 39 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.04 0.65 6.51 -51.93 -0.34 0.32 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -30.27 325.84 -7.87 -38.14 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.02 Total: 10.23 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -2.23 Total: -27.31 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.43 Total: -34.59 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: 0.07 Total: -6.17 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.27 -7.87 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171498533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.870 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds