Wall clock time and date at job start Mon Mar 30 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20757 * 119.99770 * 2 1 4 4 C 1.50699 * 119.99969 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.46683 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46993 * 299.99236 * 5 4 2 7 7 C 1.52994 * 109.47347 * 59.99781 * 5 4 2 8 8 N 1.46507 * 109.46725 * 179.97438 * 5 4 2 9 9 C 1.38863 * 119.99544 * 178.07534 * 8 5 4 10 10 C 1.39577 * 119.84438 * 2.13648 * 9 8 5 11 11 C 1.36325 * 120.16199 * 179.97438 * 10 9 8 12 12 C 1.40901 * 119.83323 * 0.02562 * 11 10 9 13 13 C 1.41142 * 120.15441 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99708 * 142.88929 * 13 12 11 15 15 C 1.39864 * 119.99971 * 322.89673 * 13 12 11 16 16 N 1.30900 * 120.00095 * 339.39156 * 15 13 12 17 17 Si 1.86803 * 119.99790 * 159.39661 * 15 13 12 18 18 H 1.48495 * 109.47134 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.46984 * 119.99872 * 17 15 13 20 20 H 1.48493 * 109.47223 * 239.99611 * 17 15 13 21 21 C 1.40858 * 119.69208 * 359.97438 * 12 11 10 22 22 C 1.36361 * 119.83438 * 359.71766 * 21 12 11 23 23 C 1.50703 * 119.92035 * 180.29685 * 22 21 12 24 24 H 1.08999 * 109.46897 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46663 * 299.98995 * 1 2 3 26 26 H 1.08991 * 109.47511 * 59.99599 * 1 2 3 27 27 H 1.08996 * 109.47123 * 59.99884 * 4 2 1 28 28 H 1.09001 * 109.46930 * 299.99306 * 4 2 1 29 29 H 1.09002 * 109.46718 * 192.08074 * 6 5 4 30 30 H 1.08994 * 109.47453 * 312.08526 * 6 5 4 31 31 H 1.09007 * 109.46708 * 72.08728 * 6 5 4 32 32 H 1.08997 * 109.47249 * 291.10317 * 7 5 4 33 33 H 1.08998 * 109.47451 * 51.10809 * 7 5 4 34 34 H 1.09008 * 109.47099 * 171.10413 * 7 5 4 35 35 H 0.96997 * 120.00008 * 358.07625 * 8 5 4 36 36 H 1.08007 * 119.92415 * 359.97379 * 10 9 8 37 37 H 1.08000 * 120.08412 * 180.02562 * 11 10 9 38 38 H 0.97004 * 120.00191 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.08739 * 180.02562 * 21 12 11 40 40 H 1.09003 * 109.47314 * 270.24131 * 23 22 21 41 41 H 1.09000 * 109.46967 * 30.24089 * 23 22 21 42 42 H 1.09001 * 109.47349 * 150.24290 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 6 3.7648 -1.0254 -0.0011 6 6 4.1339 -0.2229 -1.2505 7 6 4.1349 -0.2234 1.2481 8 7 4.4973 -2.2942 -0.0011 9 6 5.8854 -2.2944 -0.0419 10 6 6.5806 -1.0841 -0.0378 11 6 7.9432 -1.0768 -0.0771 12 6 8.6497 -2.2951 -0.1226 13 6 10.0605 -2.2954 -0.1641 14 1 10.6162 -3.0527 0.3689 15 6 10.7389 -1.3149 -0.8953 16 7 10.1192 -0.6605 -1.8447 17 14 12.5293 -0.9393 -0.5172 18 1 12.9941 -1.8101 0.5921 19 1 13.3542 -1.1934 -1.7256 20 1 12.6626 0.4845 -0.1174 21 6 7.9415 -3.5126 -0.1265 22 6 6.5786 -3.5048 -0.0805 23 6 5.8192 -4.8065 -0.0777 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.9972 -1.8763 -0.8908 28 1 1.9973 -1.8770 0.8892 29 1 5.2178 -0.2070 -1.3649 30 1 3.6827 -0.6875 -2.1271 31 1 3.7642 0.7975 -1.1491 32 1 3.7166 0.7803 1.1726 33 1 3.7319 -0.7194 2.1310 34 1 5.2199 -0.1595 1.3307 35 1 4.0128 -3.1340 0.0275 36 1 6.0377 -0.1510 -0.0033 37 1 8.4799 -0.1396 -0.0735 38 1 10.5895 0.0198 -2.3516 39 1 8.4765 -4.4502 -0.1608 40 1 5.6052 -5.1045 -1.1042 41 1 6.4198 -5.5766 0.4064 42 1 4.8832 -4.6800 0.4664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171498533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:09 Heat of formation + Delta-G solvation = -25.671773 kcal Electronic energy + Delta-G solvation = -21587.637678 eV Core-core repulsion = 18532.050698 eV Total energy + Delta-G solvation = -3055.586980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29070 -39.99442 -37.65923 -35.48847 -33.44082 -32.70315 -31.49145 -30.34173 -28.22591 -28.15799 -27.51075 -26.07706 -22.72830 -22.03292 -20.98497 -20.08409 -18.70369 -17.86330 -17.29582 -16.76259 -16.32651 -15.95478 -15.83437 -15.50763 -15.09767 -14.70700 -14.57240 -14.43947 -13.87646 -13.70528 -13.49623 -13.36687 -13.26206 -13.00272 -12.98455 -12.83123 -12.64322 -12.59021 -12.43475 -12.32944 -12.12128 -11.90491 -11.76638 -11.39642 -10.96515 -10.90910 -10.32783 -10.26606 -9.16750 -8.54023 -7.96901 -6.03140 1.10194 1.13141 1.15430 1.37974 1.52405 1.54407 2.28726 2.68789 2.85503 3.47270 3.71948 3.75824 4.05661 4.19026 4.34301 4.38079 4.44037 4.63080 4.67518 4.72164 4.80025 4.82460 4.82887 4.86126 4.95211 5.02440 5.05661 5.08372 5.14928 5.15382 5.29857 5.36556 5.43406 5.43664 5.55395 5.71900 5.89828 5.98667 6.23098 6.42325 6.67047 6.73711 6.90229 7.11555 7.18962 7.38629 8.54635 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027211 B = 0.004382 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.740175 B = 6388.235497 C = 7106.757554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.358 3.642 3 O -0.490 6.490 4 C -0.169 4.169 5 C 0.196 3.804 6 C -0.179 4.179 7 C -0.179 4.179 8 N -0.738 5.738 9 C 0.132 3.868 10 C -0.180 4.180 11 C -0.144 4.144 12 C 0.045 3.955 13 C -0.522 4.522 14 H 0.065 0.935 15 C 0.037 3.963 16 N -0.852 5.852 17 Si 0.968 3.032 18 H -0.260 1.260 19 H -0.269 1.269 20 H -0.270 1.270 21 C -0.185 4.185 22 C -0.146 4.146 23 C -0.088 4.088 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.399 0.601 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.279 0.721 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.585 -2.292 3.122 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.236 3.764 3 O -0.367 6.367 4 C -0.206 4.206 5 C 0.109 3.891 6 C -0.237 4.237 7 C -0.237 4.237 8 N -0.373 5.373 9 C 0.033 3.967 10 C -0.202 4.202 11 C -0.164 4.164 12 C 0.042 3.958 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.174 4.174 16 N -0.481 5.481 17 Si 0.790 3.210 18 H -0.184 1.184 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.205 4.205 22 C -0.150 4.150 23 C -0.144 4.144 24 H 0.127 0.873 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.236 0.764 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.294 -1.418 2.946 19.569 hybrid contribution 1.363 0.203 -0.136 1.385 sum -17.930 -1.215 2.809 18.190 Atomic orbital electron populations 1.22247 0.91141 1.06574 1.05216 1.24928 0.93414 0.89340 0.68727 1.90365 1.72385 1.36637 1.37286 1.22445 0.92300 0.98840 1.07065 1.19801 0.91112 0.84275 0.93933 1.22621 1.02167 1.01136 0.97821 1.22636 1.02192 1.01156 0.97712 1.44117 1.01304 1.06725 1.85201 1.17145 0.84144 0.92183 1.03279 1.20691 0.93817 0.96901 1.08745 1.20621 0.93524 0.96845 1.05383 1.17704 0.93830 0.91503 0.92740 1.19450 0.92286 1.13274 1.30394 0.91728 1.26481 1.04158 0.94224 0.92512 1.69941 1.40559 1.21282 1.16308 0.85390 0.77744 0.78741 0.79133 1.18383 1.19396 1.19469 1.20761 0.93532 0.96618 1.09601 1.19175 0.93360 0.94464 1.08029 1.20501 0.99266 0.93047 1.01629 0.87347 0.88406 0.88562 0.85838 0.85492 0.93389 0.92745 0.90992 0.90905 0.92274 0.93285 0.76370 0.86071 0.90951 0.91154 0.88846 0.91843 0.92091 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 10.33 71.24 0.74 -0.97 16 2 C 0.36 6.28 6.71 29.10 0.20 6.47 16 3 O -0.49 -13.02 12.25 -1.44 -0.02 -13.04 16 4 C -0.17 -2.81 4.69 29.85 0.14 -2.67 16 5 C 0.20 5.41 0.80 3.60 0.00 5.41 16 6 C -0.18 -5.83 7.73 71.98 0.56 -5.28 16 7 C -0.18 -5.49 7.82 71.98 0.56 -4.93 16 8 N -0.74 -22.62 5.14 -298.99 -1.54 -24.16 16 9 C 0.13 5.52 6.22 38.67 0.24 5.76 16 10 C -0.18 -8.61 6.36 22.15 0.14 -8.47 16 11 C -0.14 -8.02 8.65 22.48 0.19 -7.83 16 12 C 0.04 2.57 5.39 -21.27 -0.11 2.46 16 13 C -0.52 -30.60 8.95 23.38 0.21 -30.39 16 14 H 0.06 3.70 7.92 -2.91 -0.02 3.68 16 15 C 0.04 2.06 4.99 85.23 0.43 2.49 16 16 N -0.85 -49.43 12.05 21.82 0.26 -49.17 16 17 Si 0.97 42.38 29.61 68.60 2.03 44.41 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C -0.19 -9.41 9.37 22.47 0.21 -9.20 16 22 C -0.15 -6.24 5.86 -19.99 -0.12 -6.36 16 23 C -0.09 -2.70 9.57 71.24 0.68 -2.02 16 24 H 0.11 0.36 8.00 -2.39 -0.02 0.34 16 25 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.92 4.68 -2.39 -0.01 1.91 16 30 H 0.05 1.61 8.09 -2.39 -0.02 1.59 16 31 H 0.07 2.36 5.81 -2.38 -0.01 2.34 16 32 H 0.07 2.26 5.70 -2.39 -0.01 2.25 16 33 H 0.06 1.60 8.12 -2.39 -0.02 1.58 16 34 H 0.05 1.82 4.77 -2.38 -0.01 1.81 16 35 H 0.40 9.80 6.41 -92.71 -0.59 9.21 16 36 H 0.12 5.46 3.68 -2.91 -0.01 5.45 16 37 H 0.07 4.30 7.21 -2.91 -0.02 4.28 16 38 H 0.28 14.80 8.30 -92.71 -0.77 14.03 16 39 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.79 8.08 -2.39 -0.02 1.78 16 42 H 0.07 1.83 6.51 -2.39 -0.02 1.82 16 Total: -1.00 -71.45 325.84 5.24 -66.20 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.44 Total: 31.27 kcal Atomic # 6 Polarization: -59.59 SS G_CDS: 4.06 Total: -55.52 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.27 Total: -73.32 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.02 Total: -13.04 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -71.45 5.24 -66.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171498533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.530 kcal (2) G-P(sol) polarization free energy of solvation -71.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds