Wall clock time and date at job start Mon Mar 30 2020 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 O 1.20761 * 119.99723 * 2 1 4 4 C 1.50698 * 119.99781 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.46742 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47301 * 300.00062 * 5 4 2 7 7 C 1.52997 * 109.46927 * 60.00048 * 5 4 2 8 8 N 1.46501 * 109.46989 * 180.02562 * 5 4 2 9 9 C 1.38861 * 119.99970 * 184.12647 * 8 5 4 10 10 C 1.39585 * 119.83816 * 354.86603 * 9 8 5 11 11 C 1.36330 * 120.15496 * 179.97438 * 10 9 8 12 12 C 1.40898 * 119.83608 * 0.02562 * 11 10 9 13 13 C 1.41144 * 120.15380 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99510 * 148.74721 * 13 12 11 15 15 C 1.39857 * 120.00184 * 328.75369 * 13 12 11 16 16 N 1.30903 * 120.00105 * 338.50047 * 15 13 12 17 17 Si 1.86798 * 120.00262 * 158.49821 * 15 13 12 18 18 H 1.48503 * 109.47085 * 60.00093 * 17 15 13 19 19 H 1.48499 * 109.47472 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47021 * 300.00228 * 17 15 13 21 21 C 1.40863 * 119.69241 * 0.02562 * 12 11 10 22 22 C 1.50705 * 120.08295 * 179.97438 * 21 12 11 23 23 C 1.36360 * 119.83615 * 359.71667 * 21 12 11 24 24 H 1.08995 * 109.46890 * 239.99943 * 1 2 3 25 25 H 1.08999 * 109.46791 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46951 * 119.99911 * 1 2 3 27 27 H 1.08991 * 109.46967 * 60.00494 * 4 2 1 28 28 H 1.08999 * 109.47405 * 300.00181 * 4 2 1 29 29 H 1.08993 * 109.47251 * 198.57959 * 6 5 4 30 30 H 1.08999 * 109.46650 * 78.57034 * 6 5 4 31 31 H 1.08999 * 109.46858 * 318.57696 * 6 5 4 32 32 H 1.08998 * 109.47765 * 291.92113 * 7 5 4 33 33 H 1.09001 * 109.47162 * 51.92804 * 7 5 4 34 34 H 1.09002 * 109.46753 * 171.92300 * 7 5 4 35 35 H 0.97005 * 119.99863 * 4.12351 * 8 5 4 36 36 H 1.07993 * 119.92166 * 359.97438 * 10 9 8 37 37 H 1.07998 * 120.07798 * 180.02562 * 11 10 9 38 38 H 0.97004 * 120.00777 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47058 * 90.00271 * 22 21 12 40 40 H 1.09005 * 109.46886 * 209.99980 * 22 21 12 41 41 H 1.09001 * 109.47065 * 329.99996 * 22 21 12 42 42 H 1.08002 * 119.92195 * 180.29493 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.1350 -0.2234 -1.2482 7 6 4.1339 -0.2229 1.2503 8 7 4.4973 -2.2942 0.0011 9 6 5.8832 -2.2958 0.0880 10 6 6.5818 -1.0875 0.0671 11 6 7.9424 -1.0815 0.1526 12 6 8.6433 -2.2988 0.2617 13 6 10.0520 -2.3005 0.3501 14 1 10.5569 -3.0737 0.9101 15 6 10.7938 -1.3008 -0.2873 16 7 10.2697 -0.6304 -1.2820 17 14 12.5326 -0.9221 0.2807 18 1 13.3745 -2.1374 0.1416 19 1 13.0987 0.1695 -0.5518 20 1 12.5071 -0.4978 1.7036 21 6 7.9317 -3.5144 0.2811 22 6 8.6725 -4.8216 0.3970 23 6 6.5705 -3.5050 0.2001 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 1.9973 -1.8770 -0.8891 28 1 1.9972 -1.8763 0.8908 29 1 5.2071 -0.3035 -1.4269 30 1 3.8683 0.8230 -1.1002 31 1 3.5929 -0.6185 -2.1073 32 1 3.7035 0.7761 1.1808 33 1 3.7426 -0.7264 2.1344 34 1 5.2186 -0.1467 1.3258 35 1 4.0142 -3.1332 -0.0597 36 1 6.0432 -0.1552 -0.0170 37 1 8.4816 -0.1458 0.1367 38 1 10.7843 0.0628 -1.7244 39 1 8.7865 -5.0826 1.4491 40 1 8.1104 -5.6042 -0.1127 41 1 9.6565 -4.7235 -0.0617 42 1 6.0233 -4.4359 0.2197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171499309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:25 Heat of formation + Delta-G solvation = -11.038217 kcal Electronic energy + Delta-G solvation = -21496.445817 eV Core-core repulsion = 18441.493396 eV Total energy + Delta-G solvation = -3054.952422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15258 -38.36661 -36.33228 -33.42924 -31.93252 -30.86358 -30.80787 -28.22695 -27.49181 -26.81493 -25.77455 -24.10684 -21.10789 -20.50708 -19.50690 -18.62423 -17.08428 -16.24807 -16.06064 -15.50617 -14.98041 -14.62559 -14.29647 -14.00272 -13.84388 -13.20400 -13.05789 -12.77999 -12.48508 -12.46642 -12.35774 -11.99124 -11.85119 -11.57579 -11.43630 -11.24614 -11.08419 -11.01745 -10.85343 -10.80404 -10.61847 -10.34947 -10.26487 -9.61467 -9.44293 -9.03535 -8.99891 -8.43260 -7.25994 -6.61350 -6.25045 -3.97588 1.88528 2.97605 3.09095 3.18396 3.21756 3.39987 3.78854 4.11232 4.54207 4.75852 4.79500 4.90146 5.00080 5.19021 5.26962 5.44323 5.65013 5.74312 5.77898 5.82592 6.16399 6.23848 6.28084 6.35156 6.37129 6.39197 6.50280 6.72751 6.74784 6.80200 6.81236 7.01407 7.08813 7.28310 7.42358 7.49302 7.64296 7.78101 7.85727 8.20532 8.36265 8.55207 8.74704 8.85203 9.11893 9.21627 10.44461 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.004268 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.133675 B = 6558.179896 C = 7227.985254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.355 3.645 3 O -0.443 6.443 4 C -0.173 4.173 5 C 0.202 3.798 6 C -0.179 4.179 7 C -0.185 4.185 8 N -0.755 5.755 9 C 0.105 3.895 10 C -0.176 4.176 11 C -0.122 4.122 12 C 0.084 3.916 13 C -0.474 4.474 14 H 0.074 0.926 15 C 0.081 3.919 16 N -0.805 5.805 17 Si 0.895 3.105 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.267 1.267 21 C -0.156 4.156 22 C -0.084 4.084 23 C -0.159 4.159 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.381 0.619 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.276 0.724 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.341 -0.729 1.622 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.230 3.770 3 O -0.316 6.316 4 C -0.211 4.211 5 C 0.114 3.886 6 C -0.237 4.237 7 C -0.243 4.243 8 N -0.390 5.390 9 C 0.008 3.992 10 C -0.197 4.197 11 C -0.142 4.142 12 C 0.081 3.919 13 C -0.505 4.505 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.432 5.432 17 Si 0.720 3.280 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.158 4.158 22 C -0.141 4.141 23 C -0.181 4.181 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.213 0.787 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.960 0.198 1.447 15.031 hybrid contribution 0.505 -0.263 0.080 0.575 sum -14.455 -0.066 1.528 14.536 Atomic orbital electron populations 1.22315 0.94630 1.04783 1.04336 1.24391 0.91597 0.90287 0.70752 1.90368 1.71360 1.35207 1.34650 1.22375 0.96433 0.97790 1.04501 1.19628 0.87950 0.85599 0.95407 1.22654 1.04051 1.00512 0.96523 1.22731 1.04851 1.00331 0.96338 1.44024 1.03380 1.04903 1.86672 1.17219 0.81962 0.93748 1.06301 1.20511 0.94809 0.95282 1.09141 1.20747 0.92019 0.98054 1.03412 1.17305 0.93157 0.89842 0.91580 1.19229 0.91431 1.10022 1.29828 0.90829 1.25732 0.99707 0.94925 0.93142 1.69871 1.38706 1.19165 1.15495 0.86596 0.82910 0.78625 0.79835 1.19344 1.20708 1.19136 1.19325 0.92375 0.94549 1.09540 1.20407 1.00117 0.94255 0.99343 1.19673 0.93952 0.94213 1.10299 0.89173 0.90120 0.89178 0.88400 0.88373 0.90032 0.91105 0.93987 0.90926 0.93800 0.89707 0.78658 0.87358 0.87797 0.91355 0.94139 0.94615 0.91872 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 10.26 36.01 0.37 -0.98 16 2 C 0.36 3.76 6.71 -29.03 -0.19 3.56 16 3 O -0.44 -6.30 12.33 6.00 0.07 -6.23 16 4 C -0.17 -1.85 4.73 -27.88 -0.13 -1.98 16 5 C 0.20 3.06 0.80 -131.82 -0.11 2.95 16 6 C -0.18 -2.96 7.61 37.16 0.28 -2.68 16 7 C -0.18 -3.01 7.76 37.16 0.29 -2.72 16 8 N -0.76 -12.86 5.22 -45.86 -0.24 -13.10 16 9 C 0.10 2.25 6.19 -83.69 -0.52 1.73 16 10 C -0.18 -4.10 6.32 -39.77 -0.25 -4.35 16 11 C -0.12 -3.21 8.63 -39.26 -0.34 -3.55 16 12 C 0.08 2.26 5.47 -106.80 -0.58 1.67 16 13 C -0.47 -12.82 7.91 -37.87 -0.30 -13.12 16 14 H 0.07 1.93 7.14 -52.49 -0.37 1.55 16 15 C 0.08 2.10 4.99 -17.34 -0.09 2.02 16 16 N -0.81 -21.75 11.67 55.54 0.65 -21.11 16 17 Si 0.90 19.50 29.61 -169.99 -5.03 14.47 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 C -0.16 -3.81 5.90 -104.30 -0.62 -4.42 16 22 C -0.08 -1.80 9.41 36.01 0.34 -1.46 16 23 C -0.16 -3.56 9.46 -39.77 -0.38 -3.94 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.88 8.13 -51.93 -0.42 0.46 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.59 5.05 -51.93 -0.26 1.33 16 30 H 0.07 1.17 6.00 -51.93 -0.31 0.86 16 31 H 0.04 0.63 8.00 -51.93 -0.42 0.22 16 32 H 0.07 1.17 5.64 -51.93 -0.29 0.87 16 33 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.08 1.61 4.59 -51.93 -0.24 1.37 16 35 H 0.38 5.65 8.48 -40.82 -0.35 5.30 16 36 H 0.11 2.35 3.80 -52.49 -0.20 2.16 16 37 H 0.10 2.83 6.80 -52.49 -0.36 2.48 16 38 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 41 H 0.06 1.39 6.87 -51.93 -0.36 1.04 16 42 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -29.74 326.06 -7.95 -37.69 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.09 Total: 10.62 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -2.22 Total: -27.26 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.41 Total: -34.20 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: 0.07 Total: -6.23 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.74 -7.95 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171499309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.653 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds