Wall clock time and date at job start Mon Mar 30 2020 02:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 O 1.20761 * 119.99723 * 2 1 4 4 C 1.50698 * 119.99781 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.46742 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47301 * 300.00062 * 5 4 2 7 7 C 1.52997 * 109.46927 * 60.00048 * 5 4 2 8 8 N 1.46501 * 109.46989 * 180.02562 * 5 4 2 9 9 C 1.38861 * 119.99970 * 184.12647 * 8 5 4 10 10 C 1.39585 * 119.83816 * 354.86603 * 9 8 5 11 11 C 1.36330 * 120.15496 * 179.97438 * 10 9 8 12 12 C 1.40898 * 119.83608 * 0.02562 * 11 10 9 13 13 C 1.41144 * 120.15380 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99510 * 148.74721 * 13 12 11 15 15 C 1.39857 * 120.00184 * 328.75369 * 13 12 11 16 16 N 1.30903 * 120.00105 * 338.50047 * 15 13 12 17 17 Si 1.86798 * 120.00262 * 158.49821 * 15 13 12 18 18 H 1.48503 * 109.47085 * 60.00093 * 17 15 13 19 19 H 1.48499 * 109.47472 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47021 * 300.00228 * 17 15 13 21 21 C 1.40863 * 119.69241 * 0.02562 * 12 11 10 22 22 C 1.50705 * 120.08295 * 179.97438 * 21 12 11 23 23 C 1.36360 * 119.83615 * 359.71667 * 21 12 11 24 24 H 1.08995 * 109.46890 * 239.99943 * 1 2 3 25 25 H 1.08999 * 109.46791 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46951 * 119.99911 * 1 2 3 27 27 H 1.08991 * 109.46967 * 60.00494 * 4 2 1 28 28 H 1.08999 * 109.47405 * 300.00181 * 4 2 1 29 29 H 1.08993 * 109.47251 * 198.57959 * 6 5 4 30 30 H 1.08999 * 109.46650 * 78.57034 * 6 5 4 31 31 H 1.08999 * 109.46858 * 318.57696 * 6 5 4 32 32 H 1.08998 * 109.47765 * 291.92113 * 7 5 4 33 33 H 1.09001 * 109.47162 * 51.92804 * 7 5 4 34 34 H 1.09002 * 109.46753 * 171.92300 * 7 5 4 35 35 H 0.97005 * 119.99863 * 4.12351 * 8 5 4 36 36 H 1.07993 * 119.92166 * 359.97438 * 10 9 8 37 37 H 1.07998 * 120.07798 * 180.02562 * 11 10 9 38 38 H 0.97004 * 120.00777 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47058 * 90.00271 * 22 21 12 40 40 H 1.09005 * 109.46886 * 209.99980 * 22 21 12 41 41 H 1.09001 * 109.47065 * 329.99996 * 22 21 12 42 42 H 1.08002 * 119.92195 * 180.29493 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.1350 -0.2234 -1.2482 7 6 4.1339 -0.2229 1.2503 8 7 4.4973 -2.2942 0.0011 9 6 5.8832 -2.2958 0.0880 10 6 6.5818 -1.0875 0.0671 11 6 7.9424 -1.0815 0.1526 12 6 8.6433 -2.2988 0.2617 13 6 10.0520 -2.3005 0.3501 14 1 10.5569 -3.0737 0.9101 15 6 10.7938 -1.3008 -0.2873 16 7 10.2697 -0.6304 -1.2820 17 14 12.5326 -0.9221 0.2807 18 1 13.3745 -2.1374 0.1416 19 1 13.0987 0.1695 -0.5518 20 1 12.5071 -0.4978 1.7036 21 6 7.9317 -3.5144 0.2811 22 6 8.6725 -4.8216 0.3970 23 6 6.5705 -3.5050 0.2001 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 1.9973 -1.8770 -0.8891 28 1 1.9972 -1.8763 0.8908 29 1 5.2071 -0.3035 -1.4269 30 1 3.8683 0.8230 -1.1002 31 1 3.5929 -0.6185 -2.1073 32 1 3.7035 0.7761 1.1808 33 1 3.7426 -0.7264 2.1344 34 1 5.2186 -0.1467 1.3258 35 1 4.0142 -3.1332 -0.0597 36 1 6.0432 -0.1552 -0.0170 37 1 8.4816 -0.1458 0.1367 38 1 10.7843 0.0628 -1.7244 39 1 8.7865 -5.0826 1.4491 40 1 8.1104 -5.6042 -0.1127 41 1 9.6565 -4.7235 -0.0617 42 1 6.0233 -4.4359 0.2197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171499309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:24 Heat of formation + Delta-G solvation = -27.928928 kcal Electronic energy + Delta-G solvation = -21497.178253 eV Core-core repulsion = 18441.493396 eV Total energy + Delta-G solvation = -3055.684858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23677 -39.91057 -37.83727 -35.25022 -33.45782 -32.58324 -31.71930 -30.01357 -28.48229 -28.16335 -27.49431 -25.89008 -22.83327 -22.06144 -20.69268 -19.95627 -19.00277 -17.77225 -17.15223 -16.74746 -16.33990 -15.91143 -15.70331 -15.54039 -15.01929 -14.73600 -14.57319 -14.32134 -14.14511 -13.64540 -13.56941 -13.27489 -13.08477 -13.00179 -12.85698 -12.76810 -12.68872 -12.56859 -12.49706 -12.27689 -12.15151 -11.90577 -11.71832 -11.34370 -10.92666 -10.90784 -10.34176 -10.18805 -9.11970 -8.54027 -8.02609 -5.95031 1.10957 1.14877 1.21175 1.39316 1.49321 1.60525 2.28721 2.70637 2.87748 3.47965 3.71988 3.81639 4.06006 4.18863 4.31927 4.49286 4.52077 4.65850 4.68164 4.76152 4.79159 4.81912 4.82144 4.89060 5.00224 5.05502 5.07182 5.08407 5.21501 5.31721 5.35507 5.36719 5.41812 5.43233 5.55833 5.76958 5.97292 5.98736 6.27464 6.47578 6.68647 6.74775 6.93830 7.15119 7.23385 7.41905 8.53477 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.004268 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.133675 B = 6558.179896 C = 7227.985254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.356 3.644 3 O -0.490 6.490 4 C -0.168 4.168 5 C 0.197 3.803 6 C -0.174 4.174 7 C -0.180 4.180 8 N -0.741 5.741 9 C 0.125 3.875 10 C -0.184 4.184 11 C -0.146 4.146 12 C 0.043 3.957 13 C -0.505 4.505 14 H 0.071 0.929 15 C 0.036 3.964 16 N -0.845 5.845 17 Si 0.965 3.035 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.266 1.266 21 C -0.165 4.165 22 C -0.080 4.080 23 C -0.169 4.169 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.399 0.601 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.279 0.721 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.078 -2.523 1.982 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.234 3.766 3 O -0.366 6.366 4 C -0.205 4.205 5 C 0.110 3.890 6 C -0.232 4.232 7 C -0.238 4.238 8 N -0.376 5.376 9 C 0.026 3.974 10 C -0.205 4.205 11 C -0.166 4.166 12 C 0.040 3.960 13 C -0.536 4.536 14 H 0.089 0.911 15 C -0.175 4.175 16 N -0.474 5.474 17 Si 0.788 3.212 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.190 1.190 21 C -0.167 4.167 22 C -0.136 4.136 23 C -0.191 4.191 24 H 0.132 0.868 25 H 0.094 0.906 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.234 0.766 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.752 -1.629 1.809 17.918 hybrid contribution 1.125 0.264 -0.032 1.156 sum -16.627 -1.364 1.777 16.777 Atomic orbital electron populations 1.22302 0.91090 1.05268 1.06561 1.24932 0.93464 0.89348 0.68854 1.90377 1.72543 1.36564 1.37142 1.22399 0.92296 0.98752 1.07089 1.19774 0.91075 0.84281 0.93878 1.22568 1.01671 1.00955 0.98010 1.22650 1.02504 1.01036 0.97605 1.44029 1.01636 1.06690 1.85198 1.17324 0.84135 0.92804 1.03169 1.20614 0.93917 0.96746 1.09270 1.20664 0.93273 0.97137 1.05569 1.17629 0.93738 0.90980 0.93650 1.19430 0.92097 1.11176 1.30925 0.91081 1.26516 1.03783 0.94489 0.92756 1.69949 1.40512 1.20130 1.16799 0.85517 0.77905 0.78702 0.79118 1.18391 1.19957 1.19039 1.19793 0.93672 0.94998 1.08222 1.20387 0.99282 0.93484 1.00469 1.20009 0.93505 0.95755 1.09840 0.86755 0.90643 0.86794 0.85754 0.85742 0.93695 0.91493 0.92410 0.90895 0.92593 0.93051 0.76612 0.86642 0.90543 0.91141 0.92698 0.91871 0.93498 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 10.26 71.24 0.73 -1.06 16 2 C 0.36 6.43 6.71 29.10 0.20 6.62 16 3 O -0.49 -13.33 12.33 -1.45 -0.02 -13.35 16 4 C -0.17 -2.87 4.73 29.85 0.14 -2.73 16 5 C 0.20 5.55 0.80 3.60 0.00 5.56 16 6 C -0.17 -5.64 7.61 71.98 0.55 -5.09 16 7 C -0.18 -5.75 7.76 71.98 0.56 -5.19 16 8 N -0.74 -23.24 5.22 -298.99 -1.56 -24.80 16 9 C 0.13 5.27 6.19 38.67 0.24 5.51 16 10 C -0.18 -8.85 6.32 22.15 0.14 -8.71 16 11 C -0.15 -8.13 8.63 22.48 0.19 -7.94 16 12 C 0.04 2.39 5.47 -21.27 -0.12 2.28 16 13 C -0.50 -28.52 7.91 23.38 0.18 -28.33 16 14 H 0.07 3.88 7.14 -2.91 -0.02 3.86 16 15 C 0.04 1.97 4.99 85.22 0.43 2.40 16 16 N -0.85 -48.12 11.67 21.81 0.25 -47.87 16 17 Si 0.97 41.47 29.61 68.60 2.03 43.51 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 C -0.16 -8.06 5.90 -19.66 -0.12 -8.18 16 22 C -0.08 -3.31 9.41 71.24 0.67 -2.64 16 23 C -0.17 -7.28 9.46 22.15 0.21 -7.07 16 24 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 26 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.12 1.56 8.13 -2.39 -0.02 1.54 16 28 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.78 5.05 -2.39 -0.01 1.77 16 30 H 0.07 2.23 6.00 -2.39 -0.01 2.22 16 31 H 0.06 1.64 8.00 -2.39 -0.02 1.62 16 32 H 0.07 2.34 5.64 -2.39 -0.01 2.33 16 33 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 34 H 0.05 1.98 4.59 -2.39 -0.01 1.97 16 35 H 0.40 10.05 8.48 -92.70 -0.79 9.27 16 36 H 0.12 5.29 3.80 -2.91 -0.01 5.28 16 37 H 0.08 4.54 6.80 -2.91 -0.02 4.52 16 38 H 0.28 14.64 8.30 -92.71 -0.77 13.87 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.23 8.08 -2.38 -0.02 2.21 16 41 H 0.05 2.08 6.87 -2.39 -0.02 2.06 16 42 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -69.31 326.06 4.96 -64.35 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.25 Total: 32.72 kcal Atomic # 6 Polarization: -58.57 SS G_CDS: 4.01 Total: -54.56 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -1.31 Total: -72.67 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.02 Total: -13.35 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.51 kcal Total: -69.31 4.96 -64.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171499309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.422 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds