Wall clock time and date at job start Mon Mar 30 2020 02:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38401 * 119.82553 * 2 1 4 4 C 1.37886 * 120.17338 * 179.97438 * 3 2 1 5 5 C 1.39849 * 119.82462 * 359.97262 * 4 3 2 6 6 C 1.47171 * 120.17401 * 179.97438 * 5 4 3 7 7 O 1.21253 * 119.99612 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00049 * 180.28078 * 6 5 4 9 9 N 1.46895 * 109.46770 * 179.72718 * 8 6 5 10 10 C 1.46901 * 110.99587 * 179.97438 * 9 8 6 11 11 H 1.08995 * 109.47367 * 325.00106 * 10 9 8 12 12 C 1.53001 * 109.47301 * 84.99762 * 10 9 8 13 13 C 1.53002 * 109.47149 * 204.99675 * 10 9 8 14 14 C 1.52998 * 109.46993 * 65.00324 * 13 10 9 15 15 C 1.50703 * 109.47246 * 179.97438 * 14 13 10 16 16 H 1.07997 * 119.99706 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99751 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00408 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99656 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47121 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47154 * 120.00148 * 19 17 15 22 22 H 1.48506 * 109.47224 * 240.00351 * 19 17 15 23 23 C 1.39858 * 119.65799 * 0.25774 * 5 4 3 24 24 C 1.37886 * 119.82068 * 359.51145 * 23 5 4 25 25 H 1.09000 * 109.47117 * 89.99707 * 1 2 3 26 26 H 1.08996 * 109.47392 * 210.00088 * 1 2 3 27 27 H 1.09002 * 109.47389 * 330.00603 * 1 2 3 28 28 H 1.08000 * 119.91315 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.09068 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.46965 * 299.72573 * 8 6 5 31 31 H 1.09000 * 109.47154 * 59.72007 * 8 6 5 32 32 H 1.00901 * 111.00085 * 303.94554 * 9 8 6 33 33 H 1.08998 * 109.47497 * 300.00624 * 12 10 9 34 34 H 1.09008 * 109.46765 * 59.99802 * 12 10 9 35 35 H 1.08996 * 109.47517 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.47328 * 185.00064 * 13 10 9 37 37 H 1.08999 * 109.46984 * 304.99916 * 13 10 9 38 38 H 1.09001 * 109.46871 * 300.00019 * 14 13 10 39 39 H 1.08994 * 109.47144 * 59.99850 * 14 13 10 40 40 H 0.97004 * 119.99928 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.09249 * 179.73921 * 23 5 4 42 42 H 1.08005 * 119.91573 * 180.20908 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2091 0.0005 5 6 4.2771 0.0000 0.0017 6 6 5.7488 0.0000 0.0017 7 8 6.3550 1.0501 0.0012 8 6 6.5023 -1.3051 -0.0035 9 7 7.9465 -1.0366 -0.0090 10 6 8.7146 -2.2888 -0.0136 11 1 8.1895 -3.0394 0.5771 12 6 8.8683 -2.7877 -1.4518 13 6 10.0982 -2.0406 0.5907 14 6 9.9500 -1.6620 2.0657 15 6 11.3128 -1.4182 2.6611 16 1 12.1961 -1.5223 2.0485 17 6 11.4317 -1.0611 3.9874 18 7 10.3559 -0.9338 4.7332 19 14 13.1208 -0.7581 4.7253 20 1 14.1599 -0.9648 3.6846 21 1 13.1974 0.6363 5.2305 22 1 13.3480 -1.7043 5.8471 23 6 3.5742 -1.2091 -0.0032 24 6 2.1954 -1.2007 0.0011 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6511 2.1335 -0.0004 29 1 4.1100 2.1468 0.0001 30 1 6.2426 -1.8781 0.8867 31 1 6.2352 -1.8753 -0.8933 32 1 8.2026 -0.4521 -0.7906 33 1 7.8827 -2.9644 -1.8824 34 1 9.3935 -2.0370 -2.0426 35 1 9.4386 -3.7165 -1.4553 36 1 10.6992 -2.9460 0.5066 37 1 10.5884 -1.2280 0.0544 38 1 9.3490 -0.7566 2.1498 39 1 9.4598 -2.4746 2.6018 40 1 10.4397 -0.6829 5.6665 41 1 4.1099 -2.1468 -0.0067 42 1 1.6511 -2.1336 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:01 Heat of formation + Delta-G solvation = -30.465743 kcal Electronic energy + Delta-G solvation = -20286.763358 eV Core-core repulsion = 17230.968495 eV Total energy + Delta-G solvation = -3055.794862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12772 -38.51591 -36.81169 -33.33560 -33.07248 -31.65144 -31.05977 -29.17022 -28.09993 -25.77696 -24.83095 -22.83764 -22.26583 -21.26441 -20.06813 -19.51841 -17.04102 -16.14101 -15.99749 -15.46529 -15.36351 -14.96466 -14.69135 -14.32475 -14.08525 -13.97592 -13.72556 -13.45861 -13.08453 -12.66692 -12.52502 -12.31501 -12.23265 -12.03882 -11.84402 -11.71483 -11.37546 -11.22650 -11.12046 -10.82364 -10.38841 -10.27959 -9.59644 -9.52692 -9.21598 -9.16786 -8.91632 -8.83553 -8.18679 -7.88958 -5.83176 -3.84035 0.54774 1.16715 2.41224 3.40153 3.47172 3.51409 3.61257 3.86377 4.51751 4.53030 4.58786 4.65486 4.75044 4.93358 5.12648 5.22584 5.27676 5.31633 5.34910 5.39763 5.47190 5.52339 5.55842 5.59843 5.68556 5.75831 5.78619 6.05989 6.08684 6.22794 6.27313 6.27693 6.40963 6.67327 6.68328 6.92331 7.32306 7.44274 7.65772 7.81308 7.90016 8.13305 8.30112 8.63146 9.25247 9.78300 11.28029 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.003258 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.278406 B = 8591.719310 C = 9271.434140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.059 4.059 5 C -0.167 4.167 6 C 0.391 3.609 7 O -0.431 6.431 8 C 0.017 3.983 9 N -0.661 5.661 10 C 0.084 3.916 11 H 0.073 0.927 12 C -0.182 4.182 13 C -0.098 4.098 14 C 0.028 3.972 15 C -0.516 4.516 16 H 0.051 0.949 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.070 4.070 24 C -0.135 4.135 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.342 0.658 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.006 0.994 40 H 0.257 0.743 41 H 0.133 0.867 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.282 -1.463 -13.226 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.062 4.062 3 C -0.153 4.153 4 C -0.077 4.077 5 C -0.168 4.168 6 C 0.267 3.733 7 O -0.304 6.304 8 C -0.113 4.113 9 N -0.292 5.292 10 C -0.025 4.025 11 H 0.092 0.908 12 C -0.241 4.241 13 C -0.136 4.136 14 C -0.009 4.009 15 C -0.555 4.555 16 H 0.069 0.931 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.088 4.088 24 C -0.153 4.153 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.161 0.839 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.025 0.975 40 H 0.067 0.933 41 H 0.150 0.850 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.958 -0.776 -12.364 23.491 hybrid contribution 0.700 -0.229 -0.345 0.813 sum -19.258 -1.006 -12.709 23.096 Atomic orbital electron populations 1.20868 0.90976 1.03137 1.02551 1.20192 0.96301 0.93252 0.96448 1.21024 0.93967 0.97788 1.02478 1.21442 0.93994 0.98032 0.94215 1.20614 0.95250 0.94309 1.06662 1.22518 0.87734 0.91034 0.72038 1.90541 1.70876 1.34530 1.34410 1.22264 0.90759 0.95771 1.02504 1.60299 1.01254 1.17038 1.50590 1.21783 0.96959 0.89895 0.93862 0.90849 1.22558 1.00734 1.02017 0.98777 1.21629 0.92106 0.99686 1.00212 1.19012 0.96435 0.97328 0.88135 1.21382 0.93290 1.45721 0.95101 0.93051 1.25006 0.96204 0.95894 0.97426 1.69993 1.27696 1.48800 1.06969 0.86624 0.85029 0.77726 0.79109 1.19890 1.21139 1.21210 1.21474 0.94273 0.97448 0.95587 1.21014 0.94058 0.97740 1.02462 0.90841 0.91226 0.91266 0.85542 0.84816 0.87550 0.92550 0.83868 0.93792 0.92668 0.92052 0.93386 0.93358 0.94824 0.97527 0.93342 0.84955 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.00 36.01 0.36 -0.32 16 2 C -0.06 -0.53 5.89 -104.50 -0.62 -1.15 16 3 C -0.13 -1.28 9.68 -39.65 -0.38 -1.66 16 4 C -0.06 -0.69 9.60 -39.11 -0.38 -1.06 16 5 C -0.17 -2.06 5.87 -105.06 -0.62 -2.68 16 6 C 0.39 5.79 7.15 -30.68 -0.22 5.57 16 7 O -0.43 -7.92 16.20 5.58 0.09 -7.83 16 8 C 0.02 0.23 4.58 -4.98 -0.02 0.21 16 9 N -0.66 -11.34 5.33 -107.99 -0.58 -11.91 16 10 C 0.08 1.42 2.59 -67.71 -0.18 1.25 16 11 H 0.07 1.24 7.80 -51.93 -0.40 0.83 16 12 C -0.18 -2.42 9.16 37.16 0.34 -2.08 16 13 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 14 C 0.03 0.76 4.86 -27.88 -0.14 0.62 16 15 C -0.52 -15.34 9.11 -34.44 -0.31 -15.66 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.05 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -28.17 13.29 55.43 0.74 -27.44 16 19 Si 0.89 22.60 29.54 -169.99 -5.02 17.58 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C -0.07 -0.69 9.47 -39.10 -0.37 -1.06 16 24 C -0.13 -1.17 9.68 -39.65 -0.38 -1.55 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 27 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.13 1.59 7.65 -52.49 -0.40 1.19 16 30 H 0.11 1.44 8.01 -51.93 -0.42 1.02 16 31 H 0.06 0.62 7.37 -51.93 -0.38 0.23 16 32 H 0.34 5.67 8.17 -39.29 -0.32 5.35 16 33 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 34 H 0.05 0.72 8.13 -51.92 -0.42 0.30 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.03 1.00 7.75 -51.93 -0.40 0.59 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.13 1.06 7.05 -52.49 -0.37 0.69 16 42 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 352.03 15.07 5.30 5.30 Total: -1.00 -34.42 352.03 -9.45 -43.87 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.85 Total: 0.63 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -3.14 Total: -20.22 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.16 Total: -39.35 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.42 -9.45 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.407 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds