Wall clock time and date at job start Mon Mar 30 2020 02:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38401 * 119.82553 * 2 1 4 4 C 1.37886 * 120.17338 * 179.97438 * 3 2 1 5 5 C 1.39849 * 119.82462 * 359.97262 * 4 3 2 6 6 C 1.47171 * 120.17401 * 179.97438 * 5 4 3 7 7 O 1.21253 * 119.99612 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00049 * 180.28078 * 6 5 4 9 9 N 1.46895 * 109.46770 * 179.72718 * 8 6 5 10 10 C 1.46901 * 110.99587 * 179.97438 * 9 8 6 11 11 H 1.08995 * 109.47367 * 325.00106 * 10 9 8 12 12 C 1.53001 * 109.47301 * 84.99762 * 10 9 8 13 13 C 1.53002 * 109.47149 * 204.99675 * 10 9 8 14 14 C 1.52998 * 109.46993 * 65.00324 * 13 10 9 15 15 C 1.50703 * 109.47246 * 179.97438 * 14 13 10 16 16 H 1.07997 * 119.99706 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99751 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00408 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99656 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47121 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47154 * 120.00148 * 19 17 15 22 22 H 1.48506 * 109.47224 * 240.00351 * 19 17 15 23 23 C 1.39858 * 119.65799 * 0.25774 * 5 4 3 24 24 C 1.37886 * 119.82068 * 359.51145 * 23 5 4 25 25 H 1.09000 * 109.47117 * 89.99707 * 1 2 3 26 26 H 1.08996 * 109.47392 * 210.00088 * 1 2 3 27 27 H 1.09002 * 109.47389 * 330.00603 * 1 2 3 28 28 H 1.08000 * 119.91315 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.09068 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.46965 * 299.72573 * 8 6 5 31 31 H 1.09000 * 109.47154 * 59.72007 * 8 6 5 32 32 H 1.00901 * 111.00085 * 303.94554 * 9 8 6 33 33 H 1.08998 * 109.47497 * 300.00624 * 12 10 9 34 34 H 1.09008 * 109.46765 * 59.99802 * 12 10 9 35 35 H 1.08996 * 109.47517 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.47328 * 185.00064 * 13 10 9 37 37 H 1.08999 * 109.46984 * 304.99916 * 13 10 9 38 38 H 1.09001 * 109.46871 * 300.00019 * 14 13 10 39 39 H 1.08994 * 109.47144 * 59.99850 * 14 13 10 40 40 H 0.97004 * 119.99928 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.09249 * 179.73921 * 23 5 4 42 42 H 1.08005 * 119.91573 * 180.20908 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2091 0.0005 5 6 4.2771 0.0000 0.0017 6 6 5.7488 0.0000 0.0017 7 8 6.3550 1.0501 0.0012 8 6 6.5023 -1.3051 -0.0035 9 7 7.9465 -1.0366 -0.0090 10 6 8.7146 -2.2888 -0.0136 11 1 8.1895 -3.0394 0.5771 12 6 8.8683 -2.7877 -1.4518 13 6 10.0982 -2.0406 0.5907 14 6 9.9500 -1.6620 2.0657 15 6 11.3128 -1.4182 2.6611 16 1 12.1961 -1.5223 2.0485 17 6 11.4317 -1.0611 3.9874 18 7 10.3559 -0.9338 4.7332 19 14 13.1208 -0.7581 4.7253 20 1 14.1599 -0.9648 3.6846 21 1 13.1974 0.6363 5.2305 22 1 13.3480 -1.7043 5.8471 23 6 3.5742 -1.2091 -0.0032 24 6 2.1954 -1.2007 0.0011 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6511 2.1335 -0.0004 29 1 4.1100 2.1468 0.0001 30 1 6.2426 -1.8781 0.8867 31 1 6.2352 -1.8753 -0.8933 32 1 8.2026 -0.4521 -0.7906 33 1 7.8827 -2.9644 -1.8824 34 1 9.3935 -2.0370 -2.0426 35 1 9.4386 -3.7165 -1.4553 36 1 10.6992 -2.9460 0.5066 37 1 10.5884 -1.2280 0.0544 38 1 9.3490 -0.7566 2.1498 39 1 9.4598 -2.4746 2.6018 40 1 10.4397 -0.6829 5.6665 41 1 4.1099 -2.1468 -0.0067 42 1 1.6511 -2.1336 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:01 Heat of formation + Delta-G solvation = -51.549926 kcal Electronic energy + Delta-G solvation = -20287.677636 eV Core-core repulsion = 17230.968495 eV Total energy + Delta-G solvation = -3056.709141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10721 -39.48100 -38.19729 -35.30411 -34.01090 -33.11930 -31.98573 -30.78311 -28.94460 -27.09023 -26.48779 -23.58739 -23.36308 -22.87541 -21.51420 -20.62509 -18.41374 -18.00412 -17.19525 -16.51084 -16.41623 -16.25022 -16.15967 -15.65305 -15.02087 -14.82318 -14.54861 -14.49404 -14.36347 -14.29274 -14.02656 -13.57424 -13.20767 -13.01024 -13.00472 -12.86847 -12.79694 -12.64233 -12.54653 -12.30171 -11.93921 -11.86168 -11.53572 -11.22785 -11.01876 -10.64765 -10.49727 -9.97116 -9.68845 -9.16192 -8.14359 -6.24838 -0.32943 0.41576 1.38100 1.39785 1.42396 1.52592 2.43058 2.77195 2.82939 3.17794 3.44490 3.80392 3.94952 4.02019 4.04728 4.18036 4.26779 4.38641 4.40389 4.45730 4.50734 4.52792 4.77801 4.79102 4.81377 4.86449 4.96584 5.03546 5.08190 5.10245 5.23851 5.29528 5.33364 5.42386 5.46403 5.58416 5.58585 5.87573 5.95986 6.02278 6.19984 6.34223 6.47588 6.61745 6.95544 7.43188 8.97302 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.003258 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.278406 B = 8591.719310 C = 9271.434140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.078 4.078 5 C -0.194 4.194 6 C 0.392 3.608 7 O -0.484 6.484 8 C 0.020 3.980 9 N -0.693 5.693 10 C 0.092 3.908 11 H 0.073 0.927 12 C -0.170 4.170 13 C -0.090 4.090 14 C 0.038 3.962 15 C -0.542 4.542 16 H 0.056 0.944 17 C -0.005 4.005 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.275 1.275 23 C -0.067 4.067 24 C -0.137 4.137 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.343 0.657 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.041 0.959 38 H -0.004 1.004 39 H -0.019 1.019 40 H 0.261 0.739 41 H 0.153 0.847 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.459 -3.026 -14.237 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.057 4.057 3 C -0.158 4.158 4 C -0.097 4.097 5 C -0.196 4.196 6 C 0.271 3.729 7 O -0.361 6.361 8 C -0.109 4.109 9 N -0.325 5.325 10 C -0.017 4.017 11 H 0.091 0.909 12 C -0.228 4.228 13 C -0.128 4.128 14 C 0.000 4.000 15 C -0.580 4.580 16 H 0.074 0.926 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.788 3.212 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.201 1.201 23 C -0.085 4.085 24 C -0.154 4.154 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.163 0.837 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.162 0.838 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.000 1.000 40 H 0.069 0.931 41 H 0.170 0.830 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.150 -2.364 -13.394 25.146 hybrid contribution 0.937 0.258 -0.007 0.971 sum -20.214 -2.106 -13.400 24.343 Atomic orbital electron populations 1.20948 0.88576 1.04205 1.03702 1.20630 0.98064 0.92762 0.94263 1.21268 0.93028 0.99378 1.02171 1.21497 0.95230 0.97475 0.95468 1.20517 0.93813 0.95718 1.09502 1.22984 0.89090 0.90648 0.70139 1.90516 1.72037 1.36072 1.37452 1.22324 0.88665 0.95704 1.04230 1.60154 1.03409 1.17574 1.51329 1.21578 0.94156 0.89880 0.96129 0.90881 1.22407 1.02522 1.02157 0.95762 1.21479 0.95438 0.99569 0.96340 1.18828 0.94592 0.94658 0.91878 1.21854 0.94437 1.45893 0.95803 0.92619 1.25999 1.00778 0.95403 0.98000 1.70137 1.30374 1.49521 1.07434 0.85434 0.79636 0.77727 0.78432 1.18587 1.20693 1.20099 1.21727 0.95099 0.97114 0.94583 1.21415 0.93618 0.99084 1.01299 0.89460 0.89889 0.90556 0.83702 0.86433 0.87374 0.88645 0.83849 0.91172 0.92553 0.91134 0.92564 0.94004 0.98511 1.00028 0.93070 0.82980 0.82482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.00 71.24 0.71 -0.25 16 2 C -0.06 -0.84 5.89 -19.79 -0.12 -0.96 16 3 C -0.14 -2.55 9.68 22.23 0.22 -2.34 16 4 C -0.08 -1.91 9.60 22.58 0.22 -1.69 16 5 C -0.19 -4.86 5.87 -20.15 -0.12 -4.98 16 6 C 0.39 12.09 7.15 28.03 0.20 12.29 16 7 O -0.48 -19.15 16.20 -2.95 -0.05 -19.20 16 8 C 0.02 0.54 4.58 85.56 0.39 0.93 16 9 N -0.69 -24.24 5.33 -495.58 -2.64 -26.87 16 10 C 0.09 3.05 2.59 44.92 0.12 3.17 16 11 H 0.07 2.42 7.80 -2.39 -0.02 2.40 16 12 C -0.17 -4.10 9.16 71.98 0.66 -3.44 16 13 C -0.09 -3.88 4.83 30.59 0.15 -3.74 16 14 C 0.04 2.12 4.86 29.85 0.15 2.27 16 15 C -0.54 -32.90 9.11 25.60 0.23 -32.67 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 17 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 18 N -0.93 -60.35 13.29 21.45 0.28 -60.06 16 19 Si 0.96 46.84 29.54 68.60 2.03 48.87 16 20 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 C -0.07 -1.22 9.47 22.58 0.21 -1.01 16 24 C -0.14 -1.99 9.68 22.23 0.22 -1.77 16 25 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 27 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 28 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.12 3.12 7.65 -2.91 -0.02 3.09 16 30 H 0.11 2.90 8.01 -2.38 -0.02 2.88 16 31 H 0.10 1.85 7.37 -2.39 -0.02 1.84 16 32 H 0.34 11.65 8.17 -89.69 -0.73 10.92 16 33 H 0.07 1.35 7.45 -2.39 -0.02 1.33 16 34 H 0.06 1.36 8.13 -2.38 -0.02 1.34 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.00 -0.23 7.75 -2.39 -0.02 -0.24 16 39 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 40 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.15 2.04 7.05 -2.91 -0.02 2.02 16 42 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -78.09 352.03 3.58 -74.51 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.26 Total: 16.77 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 3.69 Total: -34.02 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -2.35 Total: -86.94 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.05 Total: -19.20 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -78.09 3.58 -74.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.960 kcal (2) G-P(sol) polarization free energy of solvation -78.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds