Wall clock time and date at job start Mon Mar 30 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48498 * 109.46639 * 269.99694 * 3 2 1 5 5 H 1.48493 * 109.47257 * 29.99871 * 3 2 1 6 6 H 1.48497 * 109.46795 * 150.00061 * 3 2 1 7 7 C 1.37874 * 119.99379 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99354 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00884 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47618 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00432 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47119 * 275.00049 * 11 10 9 13 13 C 1.52995 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47304 * 59.99463 * 13 12 11 15 15 O 1.42907 * 109.46719 * 60.00436 * 14 13 12 16 16 C 1.35895 * 117.00588 * 84.97722 * 15 14 13 17 17 C 1.38724 * 120.05948 * 174.23873 * 16 15 14 18 18 C 1.38150 * 119.94421 * 179.74360 * 17 16 15 19 19 C 1.38263 * 120.05665 * 0.50468 * 18 17 16 20 20 C 1.38264 * 120.11002 * 359.77088 * 19 18 17 21 21 C 1.38148 * 120.05956 * 359.97196 * 20 19 18 22 22 C 1.52993 * 109.47320 * 300.00154 * 14 13 12 23 23 C 1.52992 * 109.47585 * 154.99544 * 11 10 9 24 24 H 0.97002 * 119.99547 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47016 * 59.99573 * 9 7 2 26 26 H 1.09004 * 109.46606 * 300.00345 * 9 7 2 27 27 H 1.00900 * 111.00193 * 56.04036 * 10 9 7 28 28 H 1.09000 * 109.47337 * 34.99651 * 11 10 9 29 29 H 1.09000 * 109.46691 * 299.99998 * 12 11 10 30 30 H 1.08999 * 109.46908 * 59.99346 * 12 11 10 31 31 H 1.08999 * 109.46940 * 299.99847 * 13 12 11 32 32 H 1.09004 * 109.46973 * 179.97438 * 13 12 11 33 33 H 1.09003 * 109.47004 * 179.97438 * 14 13 12 34 34 H 1.08002 * 120.02548 * 359.97438 * 17 16 15 35 35 H 1.08002 * 119.96944 * 180.27527 * 18 17 16 36 36 H 1.07993 * 119.94552 * 179.74559 * 19 18 17 37 37 H 1.08002 * 119.97641 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.03397 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47302 * 299.99846 * 22 14 13 40 40 H 1.08996 * 109.47196 * 179.97438 * 22 14 13 41 41 H 1.08998 * 109.47532 * 299.99738 * 23 11 10 42 42 H 1.09001 * 109.47349 * 60.00081 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5053 -4.9070 0.0012 12 6 1.1501 -5.2952 1.4379 13 6 0.4202 -6.6399 1.4373 14 6 1.3264 -7.7118 0.8285 15 8 2.5229 -7.8197 1.6025 16 6 2.4804 -8.6268 2.6950 17 6 3.6356 -8.8725 3.4228 18 6 3.5887 -9.6892 4.5360 19 6 2.3938 -10.2699 4.9190 20 6 1.2422 -10.0312 4.1920 21 6 1.2827 -9.2111 3.0811 22 6 1.6816 -7.3237 -0.6081 23 6 2.4120 -5.9787 -0.6073 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8399 -3.5483 0.7835 28 1 0.5927 -4.8253 -0.5892 29 1 2.0627 -5.3770 2.0283 30 1 0.5041 -4.5317 1.8714 31 1 -0.4924 -6.5576 0.8469 32 1 0.1675 -6.9166 2.4609 33 1 0.8065 -8.6699 0.8285 34 1 4.5701 -8.4226 3.1214 35 1 4.4869 -9.8771 5.1055 36 1 2.3600 -10.9113 5.7872 37 1 0.3101 -10.4863 4.4928 38 1 0.3830 -9.0253 2.5133 39 1 0.7690 -7.2414 -1.1984 40 1 2.3275 -8.0871 -1.0416 41 1 2.6650 -5.7022 -1.6308 42 1 3.3246 -6.0606 -0.0169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173193983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:07 Heat of formation + Delta-G solvation = -29.702955 kcal Electronic energy + Delta-G solvation = -21071.608970 eV Core-core repulsion = 18015.847185 eV Total energy + Delta-G solvation = -3055.761785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57062 -38.51946 -36.70334 -34.02991 -32.23077 -31.19811 -30.58624 -29.84017 -28.60257 -25.72190 -23.26247 -22.72733 -22.27843 -21.77582 -20.79476 -19.66398 -17.95843 -16.59446 -16.02969 -15.91402 -15.73655 -14.90291 -14.66506 -14.53593 -13.91893 -13.67801 -13.57208 -13.39859 -13.34866 -12.76526 -12.34005 -12.21497 -11.99937 -11.77654 -11.66147 -11.49900 -11.32020 -11.02276 -10.89485 -10.72944 -10.66935 -10.31187 -10.11735 -9.99974 -9.68884 -9.14532 -9.11998 -8.45684 -8.25943 -7.19629 -6.01040 -4.02558 1.19155 1.33356 3.17550 3.33797 3.39285 3.43522 3.66236 4.44860 4.61477 4.71630 4.74717 4.79793 4.89630 4.96419 5.16175 5.23162 5.34632 5.35625 5.36575 5.47544 5.49836 5.62409 5.66042 5.74274 5.84455 5.94381 6.06244 6.09955 6.17768 6.25683 6.26968 6.38085 6.41641 6.43994 6.66504 6.72410 6.77941 7.30523 7.42979 7.48385 7.82630 8.17009 8.45856 8.67598 9.07332 9.62311 11.10058 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028432 B = 0.003360 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.572064 B = 8330.447043 C = 8614.730843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.685 5.685 11 C 0.089 3.911 12 C -0.142 4.142 13 C -0.140 4.140 14 C 0.088 3.912 15 O -0.299 6.299 16 C 0.139 3.861 17 C -0.157 4.157 18 C -0.082 4.082 19 C -0.167 4.167 20 C -0.082 4.082 21 C -0.213 4.213 22 C -0.112 4.112 23 C -0.104 4.104 24 H 0.261 0.739 25 H 0.026 0.974 26 H -0.014 1.014 27 H 0.329 0.671 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 -21.848 6.210 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.023 4.023 12 C -0.181 4.181 13 C -0.178 4.178 14 C 0.032 3.968 15 O -0.212 6.212 16 C 0.093 3.907 17 C -0.176 4.176 18 C -0.100 4.100 19 C -0.185 4.185 20 C -0.100 4.100 21 C -0.232 4.232 22 C -0.150 4.150 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.004 0.996 27 H 0.146 0.854 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.362 -21.556 5.419 22.352 hybrid contribution -0.325 0.864 1.025 1.379 sum 2.037 -20.692 6.445 21.768 Atomic orbital electron populations 1.69969 1.06073 1.26707 1.51116 1.24992 0.94876 0.99350 0.95407 0.86488 0.79709 0.83039 0.78112 1.20631 1.21338 1.19841 1.21218 0.93537 0.90352 1.50072 0.92011 1.19560 0.90639 0.87416 0.95583 1.60726 1.20829 1.01055 1.48804 1.21520 0.96390 0.90759 0.93586 1.22196 1.00642 0.95616 0.99677 1.22065 0.98586 0.96129 1.01067 1.22515 0.84570 0.98223 0.91498 1.86178 1.37414 1.61595 1.36061 1.19109 0.93831 0.90021 0.87730 1.20494 0.97177 1.02760 0.97155 1.20957 0.98053 0.95589 0.95387 1.21017 0.93038 1.03054 1.01424 1.20943 0.98287 0.96559 0.94180 1.21353 0.97632 1.03321 1.00888 1.21661 1.01695 0.98868 0.92790 1.21462 0.98804 0.92205 1.01702 0.92976 0.95615 0.99612 0.85416 0.91423 0.91684 0.91774 0.90557 0.91848 0.91398 0.85253 0.85607 0.86211 0.86077 0.85312 0.90117 0.91335 0.91358 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.19 5.17 5.24 -4.98 -0.03 5.14 16 10 N -0.69 -14.96 6.24 -108.00 -0.67 -15.64 16 11 C 0.09 1.57 2.47 -67.72 -0.17 1.40 16 12 C -0.14 -2.30 5.03 -26.73 -0.13 -2.44 16 13 C -0.14 -1.80 5.27 -26.73 -0.14 -1.94 16 14 C 0.09 1.04 2.42 -26.73 -0.06 0.98 16 15 O -0.30 -4.01 8.45 -19.41 -0.16 -4.18 16 16 C 0.14 1.73 6.60 -39.22 -0.26 1.47 16 17 C -0.16 -1.80 9.99 -39.43 -0.39 -2.19 16 18 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 19 C -0.17 -1.55 10.04 -39.56 -0.40 -1.94 16 20 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 21 C -0.21 -2.35 8.24 -39.43 -0.33 -2.67 16 22 C -0.11 -1.33 5.67 -26.71 -0.15 -1.48 16 23 C -0.10 -1.55 5.39 -26.71 -0.14 -1.69 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 26 H -0.01 -0.39 7.44 -51.93 -0.39 -0.78 16 27 H 0.33 7.04 8.47 -39.29 -0.33 6.70 16 28 H 0.07 1.26 7.80 -51.93 -0.40 0.85 16 29 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 30 H 0.06 1.16 7.45 -51.93 -0.39 0.78 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.79 6.91 -51.93 -0.36 0.43 16 33 H 0.07 0.69 6.31 -51.93 -0.33 0.36 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.27 5.43 -52.49 -0.28 0.99 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -30.93 334.18 -10.13 -41.06 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.63 Total: 4.54 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -3.42 Total: -21.37 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.06 Total: -42.06 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.16 Total: -4.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.93 -10.13 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173193983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.357 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds