Wall clock time and date at job start Mon Mar 30 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48498 * 109.46639 * 269.99694 * 3 2 1 5 5 H 1.48493 * 109.47257 * 29.99871 * 3 2 1 6 6 H 1.48497 * 109.46795 * 150.00061 * 3 2 1 7 7 C 1.37874 * 119.99379 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99354 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00884 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47618 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00432 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47119 * 275.00049 * 11 10 9 13 13 C 1.52995 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47304 * 59.99463 * 13 12 11 15 15 O 1.42907 * 109.46719 * 60.00436 * 14 13 12 16 16 C 1.35895 * 117.00588 * 84.97722 * 15 14 13 17 17 C 1.38724 * 120.05948 * 174.23873 * 16 15 14 18 18 C 1.38150 * 119.94421 * 179.74360 * 17 16 15 19 19 C 1.38263 * 120.05665 * 0.50468 * 18 17 16 20 20 C 1.38264 * 120.11002 * 359.77088 * 19 18 17 21 21 C 1.38148 * 120.05956 * 359.97196 * 20 19 18 22 22 C 1.52993 * 109.47320 * 300.00154 * 14 13 12 23 23 C 1.52992 * 109.47585 * 154.99544 * 11 10 9 24 24 H 0.97002 * 119.99547 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47016 * 59.99573 * 9 7 2 26 26 H 1.09004 * 109.46606 * 300.00345 * 9 7 2 27 27 H 1.00900 * 111.00193 * 56.04036 * 10 9 7 28 28 H 1.09000 * 109.47337 * 34.99651 * 11 10 9 29 29 H 1.09000 * 109.46691 * 299.99998 * 12 11 10 30 30 H 1.08999 * 109.46908 * 59.99346 * 12 11 10 31 31 H 1.08999 * 109.46940 * 299.99847 * 13 12 11 32 32 H 1.09004 * 109.46973 * 179.97438 * 13 12 11 33 33 H 1.09003 * 109.47004 * 179.97438 * 14 13 12 34 34 H 1.08002 * 120.02548 * 359.97438 * 17 16 15 35 35 H 1.08002 * 119.96944 * 180.27527 * 18 17 16 36 36 H 1.07993 * 119.94552 * 179.74559 * 19 18 17 37 37 H 1.08002 * 119.97641 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.03397 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47302 * 299.99846 * 22 14 13 40 40 H 1.08996 * 109.47196 * 179.97438 * 22 14 13 41 41 H 1.08998 * 109.47532 * 299.99738 * 23 11 10 42 42 H 1.09001 * 109.47349 * 60.00081 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5053 -4.9070 0.0012 12 6 1.1501 -5.2952 1.4379 13 6 0.4202 -6.6399 1.4373 14 6 1.3264 -7.7118 0.8285 15 8 2.5229 -7.8197 1.6025 16 6 2.4804 -8.6268 2.6950 17 6 3.6356 -8.8725 3.4228 18 6 3.5887 -9.6892 4.5360 19 6 2.3938 -10.2699 4.9190 20 6 1.2422 -10.0312 4.1920 21 6 1.2827 -9.2111 3.0811 22 6 1.6816 -7.3237 -0.6081 23 6 2.4120 -5.9787 -0.6073 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8399 -3.5483 0.7835 28 1 0.5927 -4.8253 -0.5892 29 1 2.0627 -5.3770 2.0283 30 1 0.5041 -4.5317 1.8714 31 1 -0.4924 -6.5576 0.8469 32 1 0.1675 -6.9166 2.4609 33 1 0.8065 -8.6699 0.8285 34 1 4.5701 -8.4226 3.1214 35 1 4.4869 -9.8771 5.1055 36 1 2.3600 -10.9113 5.7872 37 1 0.3101 -10.4863 4.4928 38 1 0.3830 -9.0253 2.5133 39 1 0.7690 -7.2414 -1.1984 40 1 2.3275 -8.0871 -1.0416 41 1 2.6650 -5.7022 -1.6308 42 1 3.3246 -6.0606 -0.0169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173193983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:06 Heat of formation + Delta-G solvation = -47.920418 kcal Electronic energy + Delta-G solvation = -21072.398939 eV Core-core repulsion = 18015.847185 eV Total energy + Delta-G solvation = -3056.551754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49599 -39.55605 -37.87538 -35.73894 -34.13989 -32.06687 -31.67431 -30.79701 -30.03801 -27.60334 -24.43693 -23.74466 -23.51810 -23.15247 -22.21287 -20.74032 -18.89381 -18.55372 -17.24725 -16.80657 -16.69562 -16.59200 -16.08003 -15.56652 -15.38002 -14.95106 -14.85968 -14.39195 -14.30743 -14.25593 -13.66267 -13.63225 -13.41335 -13.14166 -12.95885 -12.75261 -12.66869 -12.39869 -12.39119 -12.09967 -12.03043 -11.85700 -11.45323 -11.38796 -11.22966 -10.97279 -10.66505 -9.90717 -9.10423 -9.02312 -8.23798 -6.35048 0.43104 0.54931 1.39607 1.41701 1.53000 2.30681 2.39045 2.89155 3.09098 3.49694 3.69228 3.73545 3.91321 3.97922 4.02264 4.13976 4.26481 4.33949 4.38059 4.51384 4.52652 4.54077 4.55377 4.69765 4.79018 4.90276 4.91728 4.99934 5.10183 5.13046 5.15632 5.17865 5.29843 5.41367 5.42900 5.48046 5.53677 5.63184 5.63972 5.93646 6.02714 6.47322 6.56964 6.73553 6.88698 7.35958 8.87698 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028432 B = 0.003360 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.572064 B = 8330.447043 C = 8614.730843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.213 3.787 10 N -0.687 5.687 11 C 0.087 3.913 12 C -0.133 4.133 13 C -0.134 4.134 14 C 0.090 3.910 15 O -0.318 6.318 16 C 0.113 3.887 17 C -0.177 4.177 18 C -0.085 4.085 19 C -0.168 4.168 20 C -0.087 4.087 21 C -0.222 4.222 22 C -0.107 4.107 23 C -0.094 4.094 24 H 0.265 0.735 25 H -0.002 1.002 26 H -0.040 1.040 27 H 0.331 0.669 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 -23.267 6.804 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.085 3.915 10 N -0.315 5.315 11 C -0.024 4.024 12 C -0.172 4.172 13 C -0.172 4.172 14 C 0.034 3.966 15 O -0.232 6.232 16 C 0.068 3.932 17 C -0.196 4.196 18 C -0.103 4.103 19 C -0.186 4.186 20 C -0.105 4.105 21 C -0.241 4.241 22 C -0.145 4.145 23 C -0.132 4.132 24 H 0.074 0.926 25 H 0.016 0.984 26 H -0.022 1.022 27 H 0.148 0.852 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.779 -23.007 6.016 23.942 hybrid contribution -0.457 1.236 0.896 1.593 sum 2.321 -21.771 6.912 22.960 Atomic orbital electron populations 1.70094 1.07775 1.27995 1.51532 1.25964 0.95825 1.03391 0.94540 0.85324 0.78494 0.77914 0.78521 1.19735 1.20550 1.18838 1.21576 0.93766 0.91642 1.50633 0.91980 1.19171 0.90578 0.88836 0.92943 1.60653 1.20247 1.01694 1.48945 1.21638 0.96375 0.89615 0.94741 1.22017 1.00111 0.97072 0.98013 1.22030 0.98867 0.94266 1.02042 1.22540 0.84294 0.98770 0.90963 1.86152 1.38006 1.62299 1.36741 1.19369 0.94841 0.90918 0.88058 1.20709 0.97106 1.03690 0.98093 1.21283 0.99369 0.94786 0.94827 1.21401 0.92625 1.02697 1.01901 1.21306 0.99558 0.96013 0.93595 1.21530 0.97405 1.03549 1.01597 1.21666 1.02361 0.97011 0.93423 1.21343 0.98158 0.93020 1.00721 0.92596 0.98406 1.02191 0.85220 0.92518 0.92516 0.94564 0.89403 0.91152 0.88810 0.85503 0.83359 0.83671 0.83721 0.84432 0.88535 0.89533 0.91877 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.54 -31.75 9.32 25.60 0.24 -31.51 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.81 5.24 85.56 0.45 12.25 16 10 N -0.69 -31.14 6.24 -495.61 -3.09 -34.23 16 11 C 0.09 3.15 2.47 44.92 0.11 3.26 16 12 C -0.13 -4.45 5.03 30.59 0.15 -4.29 16 13 C -0.13 -3.34 5.27 30.59 0.16 -3.18 16 14 C 0.09 1.98 2.42 30.59 0.07 2.06 16 15 O -0.32 -8.29 8.45 -92.37 -0.78 -9.07 16 16 C 0.11 2.73 6.60 22.51 0.15 2.88 16 17 C -0.18 -3.94 9.99 22.37 0.22 -3.72 16 18 C -0.08 -1.49 10.04 22.25 0.22 -1.26 16 19 C -0.17 -2.67 10.04 22.28 0.22 -2.45 16 20 C -0.09 -1.46 10.04 22.25 0.22 -1.24 16 21 C -0.22 -4.50 8.24 22.37 0.18 -4.31 16 22 C -0.11 -2.35 5.67 30.61 0.17 -2.17 16 23 C -0.09 -2.80 5.39 30.61 0.16 -2.63 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.00 -0.13 8.06 -2.38 -0.02 -0.15 16 26 H -0.04 -2.35 7.44 -2.39 -0.02 -2.37 16 27 H 0.33 14.71 8.47 -89.69 -0.76 13.95 16 28 H 0.06 2.18 7.80 -2.39 -0.02 2.16 16 29 H 0.06 1.97 7.67 -2.39 -0.02 1.95 16 30 H 0.04 1.38 7.45 -2.39 -0.02 1.37 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 1.67 6.91 -2.38 -0.02 1.66 16 33 H 0.09 1.63 6.31 -2.39 -0.02 1.62 16 34 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.14 2.41 5.43 -2.91 -0.02 2.39 16 39 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 1.83 7.68 -2.39 -0.02 1.81 16 Total: -1.00 -68.06 334.18 1.89 -66.16 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.24 Total: 22.87 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 3.21 Total: -35.81 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -2.81 Total: -91.44 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.78 Total: -9.07 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -68.06 1.89 -66.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173193983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.243 kcal (2) G-P(sol) polarization free energy of solvation -68.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds