Wall clock time and date at job start Mon Mar 30 2020 01:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00559 * 2 1 4 4 H 1.48501 * 109.47103 * 240.00457 * 3 2 1 5 5 H 1.48504 * 109.46697 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46999 * 120.00004 * 3 2 1 7 7 C 1.37885 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99798 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47336 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47196 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47311 * 59.99887 * 11 10 9 13 13 N 1.46904 * 109.46904 * 60.00253 * 12 11 10 14 14 C 1.46899 * 111.00029 * 155.00222 * 13 12 11 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.38270 * 119.94279 * 269.72587 * 15 14 13 17 17 C 1.38141 * 120.05541 * 179.72666 * 16 15 14 18 18 C 1.38732 * 119.94181 * 0.56721 * 17 16 15 19 19 O 1.35897 * 120.05770 * 179.68339 * 18 17 16 20 20 C 1.38738 * 119.89002 * 359.70543 * 18 17 16 21 21 C 1.38141 * 119.94391 * 0.02562 * 20 18 17 22 22 C 1.52993 * 109.47083 * 300.00183 * 12 11 10 23 23 C 1.52998 * 109.46814 * 59.99744 * 9 7 2 24 24 H 0.97007 * 119.99679 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46830 * 300.00239 * 9 7 2 26 26 H 1.09008 * 109.47285 * 59.99760 * 10 9 7 27 27 H 1.09002 * 109.46994 * 300.00249 * 10 9 7 28 28 H 1.08997 * 109.47164 * 299.99513 * 11 10 9 29 29 H 1.09005 * 109.46948 * 180.02562 * 11 10 9 30 30 H 1.08994 * 109.47263 * 179.97438 * 12 11 10 31 31 H 1.00902 * 111.00190 * 31.03923 * 13 12 11 32 32 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 33 33 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 34 34 H 1.07999 * 119.97019 * 359.97438 * 16 15 14 35 35 H 1.07998 * 120.03323 * 180.24999 * 17 16 15 36 36 H 0.96700 * 114.00100 * 270.02309 * 19 18 17 37 37 H 1.07996 * 120.02821 * 179.97438 * 20 18 17 38 38 H 1.07993 * 119.97516 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.46997 * 179.97438 * 22 12 11 40 40 H 1.08999 * 109.47404 * 299.99876 * 22 12 11 41 41 H 1.08998 * 109.47315 * 300.00313 * 23 9 7 42 42 H 1.08999 * 109.47019 * 60.00610 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4800 -4.9871 -0.0025 12 6 0.5998 -5.0672 -1.2513 13 7 1.4439 -4.9886 -2.4511 14 6 0.7886 -5.6301 -3.5987 15 6 1.6820 -5.5293 -4.8082 16 6 1.5755 -4.4424 -5.6563 17 6 2.3971 -4.3449 -6.7625 18 6 3.3216 -5.3444 -7.0287 19 8 4.1266 -5.2540 -8.1198 20 6 3.4227 -6.4367 -6.1793 21 6 2.6026 -6.5269 -5.0713 22 6 -0.3943 -3.9043 -1.2501 23 6 0.3708 -2.5799 -1.2494 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6049 0.8877 27 1 2.8710 -3.6040 -0.8923 28 1 0.8538 -5.0455 0.8878 29 1 2.1883 -5.8157 -0.0029 30 1 0.0551 -6.0113 -1.2520 31 1 2.3526 -5.3929 -2.2811 32 1 0.6022 -6.6796 -3.3707 33 1 -0.1576 -5.1292 -3.8036 34 1 0.8520 -3.6671 -5.4514 35 1 2.3164 -3.4938 -7.4224 36 1 3.7560 -5.6576 -8.9165 37 1 4.1413 -7.2163 -6.3846 38 1 2.6811 -7.3767 -4.4096 39 1 -1.0211 -3.9611 -2.1400 40 1 -1.0206 -3.9626 -0.3599 41 1 -0.3374 -1.7514 -1.2490 42 1 0.9971 -2.5220 -2.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:09 Heat of formation + Delta-G solvation = -36.388373 kcal Electronic energy + Delta-G solvation = -21227.679879 eV Core-core repulsion = 18171.628192 eV Total energy + Delta-G solvation = -3056.051687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82720 -38.32181 -36.94659 -34.33675 -32.33760 -31.02091 -30.23172 -29.63517 -28.12656 -24.88068 -24.04253 -22.83109 -21.60240 -21.10244 -20.46960 -18.49657 -18.08699 -16.23181 -16.19503 -15.88310 -15.39495 -14.73195 -14.63027 -14.47758 -14.13785 -13.58112 -13.49066 -12.92963 -12.62366 -12.49516 -12.12528 -12.00330 -11.75265 -11.57250 -11.39537 -11.14688 -10.92909 -10.63453 -10.55823 -10.51775 -10.15488 -9.99426 -9.66027 -9.19085 -9.00883 -8.79215 -8.55239 -8.46092 -8.12855 -7.89281 -5.84169 -3.89028 1.16896 1.33720 3.40051 3.43949 3.47517 3.55946 4.10971 4.54626 4.61485 4.81896 4.90833 4.96056 5.30738 5.35918 5.44964 5.47785 5.56049 5.68901 5.70673 5.76834 5.87269 6.01068 6.21321 6.24992 6.37621 6.38521 6.46445 6.54747 6.59653 6.64230 6.77960 6.84590 6.93164 7.09976 7.34836 7.45925 7.53399 7.60441 7.72935 7.79240 7.92432 8.26155 8.35925 8.65740 9.14845 9.74255 11.21028 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.004525 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.701963 B = 6185.848682 C = 7150.845623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.507 4.507 8 H 0.051 0.949 9 C 0.053 3.947 10 C -0.102 4.102 11 C -0.118 4.118 12 C 0.094 3.906 13 N -0.665 5.665 14 C 0.098 3.902 15 C -0.081 4.081 16 C -0.077 4.077 17 C -0.145 4.145 18 C 0.096 3.904 19 O -0.501 6.501 20 C -0.148 4.148 21 C -0.101 4.101 22 C -0.106 4.106 23 C -0.098 4.098 24 H 0.257 0.743 25 H 0.017 0.983 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.025 0.975 31 H 0.336 0.664 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.386 0.614 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 -14.518 -11.980 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.034 3.966 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.015 4.015 13 N -0.296 5.296 14 C -0.030 4.030 15 C -0.082 4.082 16 C -0.096 4.096 17 C -0.163 4.163 18 C 0.052 3.948 19 O -0.311 6.311 20 C -0.166 4.166 21 C -0.119 4.119 22 C -0.144 4.144 23 C -0.136 4.136 24 H 0.067 0.933 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.155 0.845 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.241 0.759 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.446 -13.465 -11.736 17.920 hybrid contribution 0.332 -0.236 -0.139 0.430 sum 1.778 -13.701 -11.876 18.218 Atomic orbital electron populations 1.69886 1.05775 1.26062 1.51419 1.24936 0.94777 0.98756 0.95471 0.86767 0.79673 0.83673 0.78488 1.20406 1.21465 1.20492 1.21214 0.92734 0.90947 1.49630 0.93114 1.18588 0.92560 0.91239 0.94190 1.21541 0.98655 0.93891 0.99925 1.21742 0.98233 0.98911 0.96698 1.21535 0.94188 0.96740 0.89011 1.60477 1.05373 1.59803 1.03997 1.20915 0.96660 0.96625 0.88830 1.19904 0.97410 0.94559 0.96315 1.21015 0.98492 0.97067 0.92989 1.21440 0.95870 0.99493 0.99514 1.18485 0.92036 0.94412 0.89867 1.84842 1.44835 1.81735 1.19663 1.21318 1.00557 0.98105 0.96651 1.20915 0.95309 0.98844 0.96865 1.21607 0.96460 0.97153 0.99144 1.21423 0.99199 0.93689 0.99242 0.93282 0.96513 0.94303 0.92505 0.92136 0.94030 0.95703 0.84521 0.95121 0.90134 0.85116 0.85515 0.75876 0.85780 0.86023 0.94373 0.93223 0.90085 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 11.32 55.43 0.63 -25.32 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.27 8.56 -34.44 -0.29 -14.56 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.32 2.10 -91.78 -0.19 1.13 16 10 C -0.10 -2.15 4.98 -26.74 -0.13 -2.28 16 11 C -0.12 -2.02 5.30 -26.73 -0.14 -2.17 16 12 C 0.09 1.55 2.82 -67.72 -0.19 1.36 16 13 N -0.66 -10.29 4.81 -107.99 -0.52 -10.81 16 14 C 0.10 1.28 5.61 -4.98 -0.03 1.26 16 15 C -0.08 -1.03 5.39 -104.60 -0.56 -1.59 16 16 C -0.08 -1.00 9.69 -39.60 -0.38 -1.38 16 17 C -0.14 -1.77 9.99 -39.43 -0.39 -2.16 16 18 C 0.10 1.14 6.71 -39.21 -0.26 0.87 16 19 O -0.50 -5.23 13.50 -19.42 -0.26 -5.49 16 20 C -0.15 -1.65 9.99 -39.43 -0.39 -2.04 16 21 C -0.10 -1.14 9.69 -39.61 -0.38 -1.52 16 22 C -0.11 -2.03 5.53 -26.76 -0.15 -2.18 16 23 C -0.10 -2.31 4.82 -26.76 -0.13 -2.44 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.06 1.21 7.48 -51.93 -0.39 0.82 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.03 0.37 7.80 -51.93 -0.40 -0.03 16 31 H 0.34 4.98 8.18 -39.29 -0.32 4.66 16 32 H 0.03 0.36 8.00 -51.93 -0.42 -0.06 16 33 H 0.08 1.09 7.38 -51.93 -0.38 0.70 16 34 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.39 2.00 9.06 45.56 0.41 2.42 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.04 0.69 7.45 -51.93 -0.39 0.30 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 42 H 0.05 1.19 7.60 -51.93 -0.39 0.80 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -30.71 334.97 -9.81 -40.52 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.94 Total: 5.30 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -3.74 Total: -26.09 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.11 Total: -36.13 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.26 Total: -5.49 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.71 -9.81 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.128 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds